Wall clock time and date at job start Tue Mar 31 2020 18:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47553 * 2 1 4 4 N 1.46499 * 109.46766 * 120.00669 * 2 1 3 5 5 C 1.35532 * 125.68261 * 320.73452 * 4 2 1 6 6 C 1.35451 * 108.87356 * 180.30833 * 5 4 2 7 7 C 1.39838 * 107.86406 * 359.73268 * 6 5 4 8 8 C 1.37655 * 125.67402 * 140.58736 * 4 2 1 9 9 C 1.46674 * 126.23628 * 359.95431 * 8 4 2 10 10 O 1.21700 * 119.99997 * 148.42277 * 9 8 4 11 11 N 1.34776 * 120.00085 * 328.42780 * 9 8 4 12 12 C 1.46503 * 119.99985 * 185.03968 * 11 9 8 13 13 C 1.52994 * 109.49696 * 54.78157 * 12 11 9 14 14 O 1.42896 * 109.47538 * 54.23872 * 13 12 11 15 15 C 1.53047 * 109.49643 * 294.71400 * 12 11 9 16 16 C 1.53034 * 109.53825 * 301.37967 * 15 12 11 17 17 C 1.53188 * 109.34401 * 298.62034 * 16 15 12 18 18 N 1.47003 * 108.73607 * 54.62128 * 17 16 15 19 19 C 1.36939 * 120.61409 * 126.39149 * 18 17 16 20 20 H 1.08000 * 119.99497 * 324.61848 * 19 18 17 21 21 C 1.38811 * 120.00386 * 144.61782 * 19 18 17 22 22 N 1.31620 * 119.99740 * 347.93918 * 21 19 18 23 23 Si 1.86792 * 120.00058 * 167.93427 * 21 19 18 24 24 H 1.48495 * 109.47392 * 60.00426 * 23 21 19 25 25 H 1.48501 * 109.46934 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47505 * 299.99926 * 23 21 19 27 27 C 1.46918 * 118.75665 * 306.41220 * 18 17 16 28 28 H 1.09002 * 109.46745 * 59.99305 * 1 2 3 29 29 H 1.08990 * 109.47250 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46651 * 299.99963 * 1 2 3 31 31 H 1.09009 * 109.46651 * 240.00037 * 2 1 3 32 32 H 1.08993 * 109.47251 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47153 * 300.00743 * 3 2 1 34 34 H 1.09007 * 109.46399 * 60.00119 * 3 2 1 35 35 H 1.08001 * 125.55957 * 0.02562 * 5 4 2 36 36 H 1.08002 * 126.06813 * 179.69911 * 6 5 4 37 37 H 1.08001 * 126.45482 * 180.02562 * 7 6 5 38 38 H 0.96997 * 120.00124 * 5.04749 * 11 9 8 39 39 H 1.09004 * 109.47068 * 174.24354 * 13 12 11 40 40 H 1.09005 * 109.47230 * 294.23521 * 13 12 11 41 41 H 0.96693 * 114.00277 * 180.02562 * 14 13 12 42 42 H 1.09004 * 109.45274 * 181.36320 * 15 12 11 43 43 H 1.08995 * 109.44800 * 61.39622 * 15 12 11 44 44 H 1.08997 * 109.49836 * 58.59048 * 16 15 12 45 45 H 1.09001 * 109.49572 * 178.65436 * 16 15 12 46 46 H 1.08995 * 109.59084 * 174.43627 * 17 16 15 47 47 H 1.09000 * 109.58896 * 294.86667 * 17 16 15 48 48 H 0.96998 * 119.99898 * 179.97438 * 22 21 19 49 49 H 1.09003 * 109.59033 * 293.82050 * 27 18 17 50 50 H 1.08997 * 109.70862 * 173.46853 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 1.4782 -0.6022 2.4360 6 6 2.2004 -1.3724 3.2845 7 6 3.2285 -1.9717 2.5503 8 6 3.1004 -1.5401 1.2471 9 6 3.9637 -1.9131 0.1215 10 8 5.1400 -2.1596 0.3125 11 7 3.4542 -1.9827 -1.1243 12 6 4.2869 -2.4614 -2.2305 13 6 4.8553 -3.8386 -1.8830 14 8 3.7868 -4.7206 -1.5334 15 6 5.4364 -1.4790 -2.4667 16 6 4.8688 -0.0933 -2.7823 17 6 4.0276 -0.1685 -4.0604 18 7 3.0089 -1.2152 -3.8943 19 6 1.6839 -0.9377 -4.1007 20 1 1.2858 0.0286 -3.8284 21 6 0.8525 -1.8983 -4.6600 22 7 1.3695 -2.9776 -5.2080 23 14 -0.9999 -1.6594 -4.6349 24 1 -1.3484 -0.4143 -5.3653 25 1 -1.6574 -2.8186 -5.2900 26 1 -1.4667 -1.5557 -3.2290 27 6 3.4389 -2.5642 -3.5022 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8901 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9562 0.8901 35 1 0.6157 -0.0102 2.7045 36 1 2.0153 -1.5003 4.3409 37 1 3.9809 -2.6460 2.9320 38 1 2.5362 -1.7158 -1.2885 39 1 5.3899 -4.2390 -2.7445 40 1 5.5410 -3.7467 -1.0406 41 1 4.0744 -5.6139 -1.3004 42 1 6.0415 -1.8232 -3.3055 43 1 6.0554 -1.4226 -1.5714 44 1 4.2435 0.2409 -1.9544 45 1 5.6879 0.6111 -2.9268 46 1 3.5414 0.7913 -4.2349 47 1 4.6695 -0.4145 -4.9063 48 1 0.7885 -3.6491 -5.5985 49 1 4.0328 -3.0055 -4.3026 50 1 2.5654 -3.1870 -3.3096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733590721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:58 Heat of formation + Delta-G solvation = -8.954155 kcal Electronic energy + Delta-G solvation = -32520.065313 eV Core-core repulsion = 28549.056392 eV Total energy + Delta-G solvation = -3971.008921 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.34128 -39.58430 -37.21471 -35.88133 -35.37656 -33.67616 -32.58943 -30.64875 -29.97617 -29.56382 -28.53358 -27.25391 -25.47271 -25.09143 -23.12738 -22.28625 -22.13613 -20.54410 -20.10819 -19.23163 -18.72022 -17.23912 -16.87426 -16.76252 -15.78598 -15.30086 -15.06234 -14.74636 -14.62121 -14.19595 -13.99701 -13.98428 -13.76558 -13.39101 -13.19074 -13.04075 -12.69064 -12.56486 -12.38820 -12.38765 -12.13921 -12.02097 -11.90683 -11.90122 -11.50577 -11.29966 -11.18458 -11.02380 -10.90358 -10.80856 -10.53737 -10.28876 -10.05157 -9.94821 -9.65318 -9.61531 -9.01767 -8.60486 -8.53936 -8.43883 -7.91702 -6.67861 -5.90739 -3.43213 1.88684 2.86847 3.03134 3.26738 3.32222 3.35306 3.55135 3.85071 4.36541 4.59231 4.68987 4.90765 4.93410 5.10861 5.21530 5.28821 5.36850 5.48447 5.52056 5.57468 5.62041 5.68892 5.70362 5.73798 5.79210 5.82696 5.92412 5.96122 6.02980 6.09300 6.13924 6.28011 6.35408 6.37028 6.41207 6.46236 6.49565 6.61752 6.78194 6.93946 7.01512 7.02835 7.20462 7.31414 7.43660 7.52507 7.68184 8.08732 8.16168 8.37638 8.71770 9.09243 9.70223 10.32685 11.16982 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009909 B = 0.006247 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.171365 B = 4481.310294 C = 5668.968329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.108 3.892 3 C -0.158 4.158 4 N -0.416 5.416 5 C 0.010 3.990 6 C -0.214 4.214 7 C -0.128 4.128 8 C -0.041 4.041 9 C 0.588 3.412 10 O -0.546 6.546 11 N -0.686 5.686 12 C 0.155 3.845 13 C 0.067 3.933 14 O -0.560 6.560 15 C -0.120 4.120 16 C -0.128 4.128 17 C 0.142 3.858 18 N -0.589 5.589 19 C -0.269 4.269 20 H 0.062 0.938 21 C 0.016 3.984 22 N -0.892 5.892 23 Si 0.897 3.103 24 H -0.281 1.281 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.178 3.822 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.115 0.885 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.161 0.839 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.403 0.597 39 H 0.045 0.955 40 H 0.062 0.938 41 H 0.368 0.632 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.018 0.982 48 H 0.257 0.743 49 H 0.034 0.966 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.761 3.878 10.946 11.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.007 3.993 3 C -0.215 4.215 4 N -0.092 5.092 5 C -0.125 4.125 6 C -0.238 4.238 7 C -0.154 4.154 8 C -0.154 4.154 9 C 0.375 3.625 10 O -0.425 6.425 11 N -0.339 5.339 12 C 0.067 3.933 13 C -0.012 4.012 14 O -0.364 6.364 15 C -0.158 4.158 16 C -0.168 4.168 17 C 0.016 3.984 18 N -0.311 5.311 19 C -0.398 4.398 20 H 0.080 0.920 21 C -0.185 4.185 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.208 1.208 25 H -0.215 1.215 26 H -0.208 1.208 27 C 0.051 3.949 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.178 0.822 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.244 0.756 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.213 0.787 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.036 0.964 48 H 0.067 0.933 49 H 0.052 0.948 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.007 4.262 10.427 11.441 hybrid contribution -1.086 -0.386 -0.055 1.153 sum 0.922 3.876 10.372 11.111 Atomic orbital electron populations 1.22118 0.92639 1.03648 1.03267 1.21887 0.96169 0.94402 0.86881 1.22143 1.02092 0.94308 1.02993 1.44452 1.22138 1.34230 1.08361 1.21771 1.01545 1.05089 0.84065 1.20731 0.99436 1.04337 0.99329 1.21120 1.00561 1.03004 0.90764 1.20653 0.94525 1.03661 0.96544 1.17096 0.86379 0.77335 0.81722 1.90701 1.15415 1.51852 1.84523 1.46244 1.16515 1.64771 1.06419 1.21265 0.92303 0.90376 0.89324 1.22601 0.89533 0.90035 0.99062 1.86559 1.34578 1.24425 1.90791 1.21738 0.97044 0.95552 1.01493 1.21930 0.98985 0.95701 1.00137 1.21012 0.91065 0.93063 0.93266 1.43966 1.02405 1.05884 1.78880 1.18992 0.83997 1.00570 1.36270 0.92050 1.25271 0.98363 0.98158 0.96712 1.69954 1.34143 1.10561 1.38719 0.86478 0.85656 0.77321 0.77902 1.20758 1.21534 1.20753 1.20942 0.97418 0.87935 0.88563 0.89846 0.91357 0.91938 0.86725 0.91917 0.90169 0.92096 0.82187 0.84531 0.84267 0.75627 0.93700 0.91976 0.78683 0.91897 0.91211 0.92770 0.93080 0.92844 0.96361 0.93308 0.94793 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 8.91 37.16 0.33 -1.64 16 2 C 0.11 1.52 3.38 -67.93 -0.23 1.29 16 3 C -0.16 -1.93 9.51 37.16 0.35 -1.58 16 4 N -0.42 -6.15 2.66 -105.80 -0.28 -6.43 16 5 C 0.01 0.13 10.51 -16.91 -0.18 -0.05 16 6 C -0.21 -2.85 10.81 -39.98 -0.43 -3.29 16 7 C -0.13 -2.03 10.78 -39.12 -0.42 -2.45 16 8 C -0.04 -0.70 6.75 -81.98 -0.55 -1.26 16 9 C 0.59 11.15 6.98 -12.86 -0.09 11.06 16 10 O -0.55 -11.24 13.34 5.19 0.07 -11.17 16 11 N -0.69 -13.02 3.58 -48.79 -0.17 -13.19 16 12 C 0.16 2.99 0.45 -131.70 -0.06 2.93 16 13 C 0.07 1.20 5.53 37.15 0.21 1.40 16 14 O -0.56 -10.11 13.08 -35.23 -0.46 -10.57 16 15 C -0.12 -2.15 4.55 -26.69 -0.12 -2.28 16 16 C -0.13 -2.25 5.93 -26.62 -0.16 -2.41 16 17 C 0.14 2.82 6.52 -3.67 -0.02 2.80 16 18 N -0.59 -13.45 2.80 -172.27 -0.48 -13.93 16 19 C -0.27 -6.65 9.52 -15.06 -0.14 -6.79 16 20 H 0.06 1.47 7.86 -52.49 -0.41 1.06 16 21 C 0.02 0.41 4.99 -17.43 -0.09 0.33 16 22 N -0.89 -24.60 11.45 55.49 0.64 -23.96 16 23 Si 0.90 20.24 29.57 -169.99 -5.03 15.22 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 27 C 0.18 4.02 3.81 -3.72 -0.01 4.01 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.62 7.18 -51.92 -0.37 0.25 16 31 H 0.12 1.93 4.40 -51.92 -0.23 1.70 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.16 1.56 7.31 -52.49 -0.38 1.18 16 36 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 38 H 0.40 7.97 5.10 -40.82 -0.21 7.76 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.14 6.17 -51.93 -0.32 0.82 16 41 H 0.37 4.81 9.12 45.56 0.42 5.22 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.07 1.30 6.42 -51.93 -0.33 0.96 16 44 H 0.05 0.98 7.53 -51.93 -0.39 0.59 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 50 H 0.09 2.41 6.34 -51.93 -0.33 2.08 16 LS Contribution 387.96 15.07 5.85 5.85 Total: -1.00 -29.87 387.96 -8.68 -38.55 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -7.18 Total: 17.54 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -1.62 Total: 2.10 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.30 Total: -57.52 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.39 Total: -21.74 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.87 -8.68 -38.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733590721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.600 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds