Wall clock time and date at job start Tue Mar 31 2020 18:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47553 * 2 1 4 4 N 1.46499 * 109.46766 * 120.00669 * 2 1 3 5 5 C 1.35532 * 125.68261 * 320.73452 * 4 2 1 6 6 C 1.35451 * 108.87356 * 180.30833 * 5 4 2 7 7 C 1.39838 * 107.86406 * 359.73268 * 6 5 4 8 8 C 1.37655 * 125.67402 * 140.58736 * 4 2 1 9 9 C 1.46674 * 126.23628 * 359.95431 * 8 4 2 10 10 O 1.21700 * 119.99997 * 148.42277 * 9 8 4 11 11 N 1.34776 * 120.00085 * 328.42780 * 9 8 4 12 12 C 1.46503 * 119.99985 * 185.03968 * 11 9 8 13 13 C 1.52994 * 109.49696 * 54.78157 * 12 11 9 14 14 O 1.42896 * 109.47538 * 54.23872 * 13 12 11 15 15 C 1.53047 * 109.49643 * 294.71400 * 12 11 9 16 16 C 1.53034 * 109.53825 * 301.37967 * 15 12 11 17 17 C 1.53188 * 109.34401 * 298.62034 * 16 15 12 18 18 N 1.47003 * 108.73607 * 54.62128 * 17 16 15 19 19 C 1.36939 * 120.61409 * 126.39149 * 18 17 16 20 20 H 1.08000 * 119.99497 * 324.61848 * 19 18 17 21 21 C 1.38811 * 120.00386 * 144.61782 * 19 18 17 22 22 N 1.31620 * 119.99740 * 347.93918 * 21 19 18 23 23 Si 1.86792 * 120.00058 * 167.93427 * 21 19 18 24 24 H 1.48495 * 109.47392 * 60.00426 * 23 21 19 25 25 H 1.48501 * 109.46934 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47505 * 299.99926 * 23 21 19 27 27 C 1.46918 * 118.75665 * 306.41220 * 18 17 16 28 28 H 1.09002 * 109.46745 * 59.99305 * 1 2 3 29 29 H 1.08990 * 109.47250 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46651 * 299.99963 * 1 2 3 31 31 H 1.09009 * 109.46651 * 240.00037 * 2 1 3 32 32 H 1.08993 * 109.47251 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47153 * 300.00743 * 3 2 1 34 34 H 1.09007 * 109.46399 * 60.00119 * 3 2 1 35 35 H 1.08001 * 125.55957 * 0.02562 * 5 4 2 36 36 H 1.08002 * 126.06813 * 179.69911 * 6 5 4 37 37 H 1.08001 * 126.45482 * 180.02562 * 7 6 5 38 38 H 0.96997 * 120.00124 * 5.04749 * 11 9 8 39 39 H 1.09004 * 109.47068 * 174.24354 * 13 12 11 40 40 H 1.09005 * 109.47230 * 294.23521 * 13 12 11 41 41 H 0.96693 * 114.00277 * 180.02562 * 14 13 12 42 42 H 1.09004 * 109.45274 * 181.36320 * 15 12 11 43 43 H 1.08995 * 109.44800 * 61.39622 * 15 12 11 44 44 H 1.08997 * 109.49836 * 58.59048 * 16 15 12 45 45 H 1.09001 * 109.49572 * 178.65436 * 16 15 12 46 46 H 1.08995 * 109.59084 * 174.43627 * 17 16 15 47 47 H 1.09000 * 109.58896 * 294.86667 * 17 16 15 48 48 H 0.96998 * 119.99898 * 179.97438 * 22 21 19 49 49 H 1.09003 * 109.59033 * 293.82050 * 27 18 17 50 50 H 1.08997 * 109.70862 * 173.46853 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 1.4782 -0.6022 2.4360 6 6 2.2004 -1.3724 3.2845 7 6 3.2285 -1.9717 2.5503 8 6 3.1004 -1.5401 1.2471 9 6 3.9637 -1.9131 0.1215 10 8 5.1400 -2.1596 0.3125 11 7 3.4542 -1.9827 -1.1243 12 6 4.2869 -2.4614 -2.2305 13 6 4.8553 -3.8386 -1.8830 14 8 3.7868 -4.7206 -1.5334 15 6 5.4364 -1.4790 -2.4667 16 6 4.8688 -0.0933 -2.7823 17 6 4.0276 -0.1685 -4.0604 18 7 3.0089 -1.2152 -3.8943 19 6 1.6839 -0.9377 -4.1007 20 1 1.2858 0.0286 -3.8284 21 6 0.8525 -1.8983 -4.6600 22 7 1.3695 -2.9776 -5.2080 23 14 -0.9999 -1.6594 -4.6349 24 1 -1.3484 -0.4143 -5.3653 25 1 -1.6574 -2.8186 -5.2900 26 1 -1.4667 -1.5557 -3.2290 27 6 3.4389 -2.5642 -3.5022 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8901 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9562 0.8901 35 1 0.6157 -0.0102 2.7045 36 1 2.0153 -1.5003 4.3409 37 1 3.9809 -2.6460 2.9320 38 1 2.5362 -1.7158 -1.2885 39 1 5.3899 -4.2390 -2.7445 40 1 5.5410 -3.7467 -1.0406 41 1 4.0744 -5.6139 -1.3004 42 1 6.0415 -1.8232 -3.3055 43 1 6.0554 -1.4226 -1.5714 44 1 4.2435 0.2409 -1.9544 45 1 5.6879 0.6111 -2.9268 46 1 3.5414 0.7913 -4.2349 47 1 4.6695 -0.4145 -4.9063 48 1 0.7885 -3.6491 -5.5985 49 1 4.0328 -3.0055 -4.3026 50 1 2.5654 -3.1870 -3.3096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733590721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:56 Heat of formation + Delta-G solvation = -27.734534 kcal Electronic energy + Delta-G solvation = -32520.879691 eV Core-core repulsion = 28549.056392 eV Total energy + Delta-G solvation = -3971.823299 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.51715 -41.04324 -38.77116 -37.38846 -36.46475 -35.34107 -34.22343 -32.24260 -31.64940 -30.67005 -29.76040 -28.21722 -27.31842 -26.67314 -24.40810 -23.95047 -23.34422 -22.10815 -21.26452 -20.55977 -20.21150 -18.73074 -18.38385 -18.22281 -17.23112 -16.79495 -16.39429 -16.29599 -15.92792 -15.83053 -15.35062 -15.31852 -15.05784 -14.83579 -14.70713 -14.47513 -14.17417 -14.04548 -13.71089 -13.47957 -13.44280 -13.24318 -13.12543 -12.96960 -12.94828 -12.87939 -12.72034 -12.54860 -12.32291 -12.31294 -12.10086 -11.86712 -11.70935 -11.55782 -11.27927 -11.14249 -10.56364 -10.52065 -9.93211 -9.64189 -9.07127 -8.57832 -7.86109 -5.40718 0.64851 1.47965 1.48290 1.54940 1.76135 1.94323 2.15611 2.47643 2.51048 3.29259 3.30267 3.53024 3.64350 3.73369 3.90306 4.04138 4.09082 4.11834 4.21673 4.27322 4.32621 4.45686 4.48056 4.52645 4.61692 4.63282 4.70840 4.75532 4.76881 4.81700 4.88070 4.94467 4.96102 5.06122 5.08904 5.16778 5.18638 5.25128 5.30966 5.35309 5.45432 5.59789 5.67760 5.70219 5.91451 6.08099 6.40682 6.42990 6.68296 6.88419 7.15148 7.25549 7.82398 8.41431 9.19653 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009909 B = 0.006247 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.171365 B = 4481.310294 C = 5668.968329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.106 3.894 3 C -0.150 4.150 4 N -0.416 5.416 5 C 0.024 3.976 6 C -0.217 4.217 7 C -0.136 4.136 8 C -0.082 4.082 9 C 0.588 3.412 10 O -0.570 6.570 11 N -0.684 5.684 12 C 0.157 3.843 13 C 0.072 3.928 14 O -0.580 6.580 15 C -0.115 4.115 16 C -0.116 4.116 17 C 0.142 3.858 18 N -0.600 5.600 19 C -0.262 4.262 20 H 0.071 0.929 21 C -0.037 4.037 22 N -0.929 5.929 23 Si 0.954 3.046 24 H -0.274 1.274 25 H -0.304 1.304 26 H -0.268 1.268 27 C 0.196 3.804 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.200 0.800 36 H 0.166 0.834 37 H 0.138 0.862 38 H 0.399 0.601 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.389 0.611 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.048 0.952 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.015 0.985 48 H 0.248 0.752 49 H 0.009 0.991 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.734 5.872 12.951 14.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.004 3.996 3 C -0.207 4.207 4 N -0.091 5.091 5 C -0.111 4.111 6 C -0.241 4.241 7 C -0.163 4.163 8 C -0.194 4.194 9 C 0.377 3.623 10 O -0.451 6.451 11 N -0.337 5.337 12 C 0.069 3.931 13 C -0.007 4.007 14 O -0.386 6.386 15 C -0.153 4.153 16 C -0.155 4.155 17 C 0.016 3.984 18 N -0.323 5.323 19 C -0.392 4.392 20 H 0.088 0.912 21 C -0.234 4.234 22 N -0.573 5.573 23 Si 0.782 3.218 24 H -0.199 1.199 25 H -0.231 1.231 26 H -0.193 1.193 27 C 0.070 3.930 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.217 0.783 36 H 0.183 0.817 37 H 0.155 0.845 38 H 0.239 0.761 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.237 0.763 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.033 0.967 48 H 0.057 0.943 49 H 0.027 0.973 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.994 6.274 12.446 13.973 hybrid contribution -0.755 -0.997 -0.629 1.400 sum 0.239 5.277 11.817 12.944 Atomic orbital electron populations 1.22114 0.91117 1.03109 1.04922 1.21899 0.97269 0.94816 0.85587 1.22087 1.00915 0.93296 1.04434 1.44534 1.21548 1.33801 1.09257 1.22462 1.01654 1.04088 0.82863 1.21083 0.98463 1.03787 1.00720 1.21368 1.01237 1.02922 0.90728 1.20508 0.96273 1.06320 0.96337 1.17343 0.86379 0.76713 0.81913 1.90666 1.16428 1.53178 1.84858 1.46206 1.16159 1.64813 1.06520 1.21131 0.92129 0.91787 0.88052 1.22532 0.89302 0.89555 0.99356 1.86511 1.35228 1.25985 1.90908 1.21702 0.96485 0.95526 1.01622 1.21807 0.99254 0.95989 0.98456 1.21105 0.90616 0.92304 0.94345 1.44140 1.02669 1.06405 1.79050 1.19318 0.84926 1.00519 1.34463 0.91161 1.25950 1.02118 0.98183 0.97119 1.70122 1.35023 1.11524 1.40627 0.85553 0.81161 0.76706 0.78363 1.19934 1.23051 1.19287 1.20535 0.95846 0.87318 0.89351 0.89692 0.92936 0.88802 0.89933 0.93661 0.89437 0.89891 0.78347 0.81675 0.84461 0.76098 0.92614 0.92113 0.76317 0.91143 0.91414 0.93288 0.90379 0.92183 0.96740 0.94269 0.97284 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 8.91 71.98 0.64 -2.78 16 2 C 0.11 2.81 3.38 44.99 0.15 2.96 16 3 C -0.15 -3.33 9.51 71.98 0.68 -2.64 16 4 N -0.42 -11.55 2.66 -488.65 -1.30 -12.85 16 5 C 0.02 0.54 10.51 83.48 0.88 1.42 16 6 C -0.22 -5.14 10.81 22.01 0.24 -4.90 16 7 C -0.14 -4.14 10.78 22.57 0.24 -3.90 16 8 C -0.08 -2.78 6.75 40.35 0.27 -2.51 16 9 C 0.59 22.56 6.98 86.45 0.60 23.16 16 10 O -0.57 -23.78 13.34 -4.35 -0.06 -23.83 16 11 N -0.68 -26.46 3.58 -426.47 -1.53 -27.99 16 12 C 0.16 6.17 0.45 3.68 0.00 6.17 16 13 C 0.07 2.62 5.53 71.98 0.40 3.02 16 14 O -0.58 -21.45 13.08 -148.98 -1.95 -23.40 16 15 C -0.11 -4.10 4.55 30.62 0.14 -3.97 16 16 C -0.12 -3.95 5.93 30.67 0.18 -3.77 16 17 C 0.14 5.56 6.52 86.35 0.56 6.12 16 18 N -0.60 -27.77 2.80 -698.93 -1.96 -29.72 16 19 C -0.26 -13.03 9.52 84.03 0.80 -12.23 16 20 H 0.07 3.32 7.86 -2.91 -0.02 3.30 16 21 C -0.04 -1.92 4.99 84.86 0.42 -1.50 16 22 N -0.93 -52.98 11.45 21.65 0.25 -52.73 16 23 Si 0.95 41.85 29.57 68.60 2.03 43.88 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 C 0.20 9.18 3.81 86.36 0.33 9.51 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 1.45 7.18 -2.38 -0.02 1.43 16 31 H 0.08 2.77 4.40 -2.38 -0.01 2.76 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.20 2.77 7.31 -2.91 -0.02 2.75 16 36 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 38 H 0.40 16.18 5.10 -92.71 -0.47 15.70 16 39 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.06 2.25 6.17 -2.38 -0.01 2.24 16 41 H 0.39 10.29 9.12 -74.06 -0.68 9.61 16 42 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 43 H 0.07 2.49 6.42 -2.39 -0.02 2.47 16 44 H 0.05 1.73 7.53 -2.39 -0.02 1.71 16 45 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.06 2.26 7.93 -2.39 -0.02 2.24 16 47 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 49 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.06 3.08 6.34 -2.39 -0.02 3.06 16 Total: -1.00 -66.31 387.96 1.84 -64.47 By element: Atomic # 1 Polarization: 48.21 SS G_CDS: -0.19 Total: 48.02 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 6.55 Total: 14.17 kcal Atomic # 7 Polarization: -118.76 SS G_CDS: -4.53 Total: -123.30 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -2.01 Total: -47.24 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -66.31 1.84 -64.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733590721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.732 kcal (2) G-P(sol) polarization free energy of solvation -66.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds