Wall clock time and date at job start Tue Mar 31 2020 19:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47365 * 2 1 4 4 N 1.46497 * 109.47269 * 120.00218 * 2 1 3 5 5 C 1.36937 * 119.99776 * 301.89910 * 4 2 1 6 6 H 1.07995 * 120.00205 * 324.85975 * 5 4 2 7 7 C 1.38816 * 119.99868 * 144.85251 * 5 4 2 8 8 N 1.31624 * 119.99661 * 157.16485 * 7 5 4 9 9 Si 1.86798 * 120.00301 * 337.17413 * 7 5 4 10 10 H 1.48497 * 109.47303 * 95.34897 * 9 7 5 11 11 H 1.48493 * 109.47119 * 215.35101 * 9 7 5 12 12 H 1.48500 * 109.46912 * 335.34947 * 9 7 5 13 13 C 1.46500 * 120.00347 * 121.90030 * 4 2 1 14 14 C 1.52998 * 109.47042 * 90.00065 * 13 4 2 15 15 C 1.53002 * 109.46743 * 180.02562 * 14 13 4 16 16 N 1.46501 * 109.47259 * 179.97438 * 15 14 13 17 17 C 1.34771 * 120.00675 * 179.97438 * 16 15 14 18 18 O 1.21614 * 119.99622 * 0.02562 * 17 16 15 19 19 C 1.47416 * 120.00563 * 180.27823 * 17 16 15 20 20 C 1.36092 * 126.45301 * 179.75284 * 19 17 16 21 21 O 1.34252 * 106.95199 * 179.97438 * 20 19 17 22 22 C 1.34048 * 108.22710 * 0.02562 * 21 20 19 23 23 C 1.50697 * 125.38144 * 179.97438 * 22 21 20 24 24 C 1.53001 * 109.47561 * 270.02734 * 23 22 21 25 25 C 1.53008 * 117.49672 * 243.74681 * 24 23 22 26 26 C 1.52996 * 117.50093 * 175.08904 * 24 23 22 27 27 N 1.29935 * 109.24334 * 359.71892 * 22 21 20 28 28 H 1.09002 * 109.47080 * 305.32970 * 1 2 3 29 29 H 1.09002 * 109.46650 * 65.32966 * 1 2 3 30 30 H 1.09000 * 109.46913 * 185.32327 * 1 2 3 31 31 H 1.09006 * 109.47293 * 240.00378 * 2 1 3 32 32 H 1.09001 * 109.47459 * 175.18510 * 3 2 1 33 33 H 1.09000 * 109.47074 * 295.19074 * 3 2 1 34 34 H 1.09002 * 109.46837 * 55.18749 * 3 2 1 35 35 H 0.97000 * 119.99976 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.46573 * 329.99795 * 13 4 2 37 37 H 1.08997 * 109.47142 * 210.00356 * 13 4 2 38 38 H 1.08994 * 109.46871 * 60.00290 * 14 13 4 39 39 H 1.08991 * 109.47168 * 299.99790 * 14 13 4 40 40 H 1.09007 * 109.47130 * 60.00128 * 15 14 13 41 41 H 1.08997 * 109.47246 * 300.00171 * 15 14 13 42 42 H 0.97010 * 119.99395 * 0.02562 * 16 15 14 43 43 H 1.08000 * 126.52089 * 0.02821 * 20 19 17 44 44 H 1.09008 * 109.46828 * 30.02591 * 23 22 21 45 45 H 1.08999 * 109.47385 * 150.01939 * 23 22 21 46 46 H 1.08997 * 115.54913 * 29.40866 * 24 23 22 47 47 H 1.09007 * 117.49743 * 359.97438 * 25 24 23 48 48 H 1.08997 * 117.49754 * 145.01703 * 25 24 23 49 49 H 1.09006 * 117.49730 * 214.97908 * 26 24 23 50 50 H 1.09003 * 117.49893 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6557 -0.2459 2.4395 6 1 1.5323 0.8117 2.6199 7 6 1.4466 -1.1546 3.4679 8 7 1.5442 -0.7640 4.7210 9 14 1.0272 -2.9316 3.0733 10 1 2.2672 -3.7484 3.0904 11 1 0.0770 -3.4529 4.0884 12 1 0.4039 -3.0059 1.7275 13 6 2.8946 -1.8570 1.0621 14 6 4.3542 -1.3987 1.0431 15 6 5.2693 -2.6169 0.9025 16 7 6.6670 -2.1781 0.8837 17 6 7.6567 -3.0855 0.7671 18 8 7.3895 -4.2685 0.6771 19 6 9.0633 -2.6445 0.7544 20 6 10.1601 -3.4431 0.6482 21 8 11.2345 -2.6385 0.6773 22 6 10.8078 -1.3736 0.7992 23 6 11.6940 -0.1569 0.8703 24 6 12.0457 0.1334 2.3307 25 6 11.5502 1.4521 2.9280 26 6 13.0354 1.2669 2.6072 27 7 9.5092 -1.3619 0.8409 28 1 -0.3633 0.5943 0.8384 29 1 -0.3633 0.4290 -0.9339 30 1 -0.3633 -1.0232 0.0953 31 1 1.8934 -0.5138 -0.8901 32 1 3.1266 1.4437 0.0863 33 1 1.7488 1.9308 -0.9299 34 1 1.6080 1.9806 0.8438 35 1 1.3984 -1.3990 5.4397 36 1 2.6654 -2.3787 0.1329 37 1 2.7358 -2.5295 1.9051 38 1 4.5833 -0.8770 1.9723 39 1 4.5130 -0.7263 0.2002 40 1 5.0400 -3.1382 -0.0269 41 1 5.1107 -3.2897 1.7452 42 1 6.8801 -1.2345 0.9559 43 1 10.1652 -4.5192 0.5570 44 1 12.6085 -0.3399 0.3059 45 1 11.1703 0.6995 0.4455 46 1 12.0792 -0.7355 2.9879 47 1 10.9741 2.1130 2.2803 48 1 11.2582 1.4507 3.9781 49 1 13.7200 1.1437 3.4466 50 1 13.4364 1.8055 1.7486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753292103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:13 Heat of formation + Delta-G solvation = 23.093333 kcal Electronic energy + Delta-G solvation = -28478.713712 eV Core-core repulsion = 24509.094474 eV Total energy + Delta-G solvation = -3969.619237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.68724 -39.43749 -37.99863 -37.10262 -35.17065 -35.03210 -32.54967 -32.16438 -31.67571 -29.34639 -28.24597 -26.30910 -25.76643 -24.06717 -22.99747 -22.75312 -22.20860 -21.28150 -21.04518 -20.31249 -19.40782 -18.25987 -17.07196 -16.74105 -16.53435 -16.15186 -15.64282 -15.58312 -15.01776 -14.82393 -14.68032 -14.51503 -13.88140 -13.84594 -13.54199 -13.32563 -13.23632 -13.02552 -12.34430 -12.20629 -12.17837 -11.89171 -11.88693 -11.79636 -11.47672 -11.38203 -11.14646 -11.04993 -10.81711 -10.79126 -10.70365 -10.47826 -10.42624 -10.41052 -10.14171 -9.91094 -9.65458 -9.35819 -9.30017 -8.89584 -8.45803 -6.83872 -5.95865 -3.34476 0.89355 1.78056 2.26406 3.10447 3.26194 3.34092 3.37065 3.50477 3.54380 3.57971 4.27304 4.44376 4.47225 4.55271 4.62046 4.64830 4.85336 4.87422 5.05407 5.14193 5.27394 5.31585 5.34790 5.40802 5.50733 5.54490 5.57033 5.72052 5.76161 5.80645 5.82589 5.85786 6.03458 6.06362 6.19142 6.24175 6.32859 6.34733 6.54310 6.58171 6.65720 6.72066 6.78185 6.94045 7.10674 7.16596 7.19784 7.62006 8.08210 8.19065 8.42060 9.02848 9.76209 10.15600 11.19897 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.002438 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.528898 B =11482.273196 C =12098.079217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.166 3.834 3 C -0.153 4.153 4 N -0.601 5.601 5 C -0.258 4.258 6 H 0.081 0.919 7 C 0.033 3.967 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.286 1.286 11 H -0.304 1.304 12 H -0.270 1.270 13 C 0.142 3.858 14 C -0.146 4.146 15 C 0.117 3.883 16 N -0.704 5.704 17 C 0.596 3.404 18 O -0.542 6.542 19 C -0.067 4.067 20 C 0.009 3.991 21 O -0.197 6.197 22 C 0.200 3.800 23 C 0.008 3.992 24 C -0.158 4.158 25 C -0.171 4.171 26 C -0.174 4.174 27 N -0.453 5.453 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.262 0.738 36 H 0.041 0.959 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.410 0.590 43 H 0.231 0.769 44 H 0.099 0.901 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.030 1.508 -9.497 24.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.060 3.940 3 C -0.212 4.212 4 N -0.323 5.323 5 C -0.387 4.387 6 H 0.098 0.902 7 C -0.167 4.167 8 N -0.543 5.543 9 Si 0.705 3.295 10 H -0.214 1.214 11 H -0.233 1.233 12 H -0.194 1.194 13 C 0.016 3.984 14 C -0.186 4.186 15 C -0.007 4.007 16 N -0.354 5.354 17 C 0.381 3.619 18 O -0.420 6.420 19 C -0.187 4.187 20 C -0.065 4.065 21 O -0.083 6.083 22 C -0.009 4.009 23 C -0.029 4.029 24 C -0.177 4.177 25 C -0.208 4.208 26 C -0.211 4.211 27 N -0.183 5.183 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.245 0.755 43 H 0.247 0.753 44 H 0.118 0.882 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.119 0.881 48 H 0.116 0.884 49 H 0.115 0.885 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 21.387 1.192 -9.339 23.367 hybrid contribution 0.185 -1.348 0.052 1.362 sum 21.571 -0.157 -9.286 23.486 Atomic orbital electron populations 1.22120 0.97659 1.01358 0.99938 1.20394 0.92492 0.92241 0.88891 1.22161 1.00721 0.98332 0.99992 1.44238 1.52351 1.33132 1.02602 1.18677 1.42428 0.93144 0.84410 0.90183 1.25403 0.98545 0.97643 0.95063 1.69873 1.50497 1.35384 0.98542 0.86996 0.77805 0.86830 0.77861 1.21394 1.23254 1.19449 1.21073 0.87957 0.90302 0.99085 1.22427 0.96975 0.96205 1.02992 1.21569 0.78598 0.98492 1.02023 1.45932 1.06447 1.10739 1.72257 1.16770 0.82591 0.85560 0.76956 1.90821 1.83540 1.16336 1.51322 1.21887 0.96180 0.89279 1.11367 1.25286 0.82810 0.97686 1.00730 1.84384 1.36662 1.18315 1.68904 1.26135 0.90022 0.84595 1.00140 1.19713 0.96988 0.89593 0.96655 1.22145 1.05867 0.94105 0.95587 1.23122 0.96615 0.98616 1.02416 1.23030 0.92971 1.01403 1.03675 1.70789 1.09145 1.21266 1.17089 0.92085 0.94507 0.93485 0.93280 0.93424 0.94409 0.92484 0.92834 0.94100 0.92782 0.90415 0.92077 0.91610 0.91332 0.75483 0.75294 0.88246 0.87165 0.87478 0.88091 0.88438 0.88468 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.04 37.16 0.34 -2.51 16 2 C 0.17 3.20 3.36 -67.93 -0.23 2.97 16 3 C -0.15 -2.70 9.11 37.16 0.34 -2.36 16 4 N -0.60 -13.61 2.06 -165.66 -0.34 -13.95 16 5 C -0.26 -6.90 8.74 -15.06 -0.13 -7.03 16 6 H 0.08 2.32 7.17 -52.49 -0.38 1.95 16 7 C 0.03 0.95 5.31 -17.43 -0.09 0.85 16 8 N -0.90 -27.22 13.97 55.49 0.78 -26.45 16 9 Si 0.87 22.21 24.97 -169.99 -4.24 17.96 16 10 H -0.29 -7.10 6.66 56.52 0.38 -6.73 16 11 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.14 2.97 4.49 -4.04 -0.02 2.95 16 14 C -0.15 -2.62 5.65 -26.73 -0.15 -2.77 16 15 C 0.12 1.95 5.67 -4.04 -0.02 1.92 16 16 N -0.70 -10.83 5.55 -61.38 -0.34 -11.18 16 17 C 0.60 9.44 7.81 -12.53 -0.10 9.35 16 18 O -0.54 -9.89 16.89 5.27 0.09 -9.80 16 19 C -0.07 -0.90 6.99 -83.02 -0.58 -1.48 16 20 C 0.01 0.09 11.95 29.96 0.36 0.45 16 21 O -0.20 -1.98 10.73 6.53 0.07 -1.91 16 22 C 0.20 2.02 7.51 -13.08 -0.10 1.92 16 23 C 0.01 0.05 6.12 -27.88 -0.17 -0.12 16 24 C -0.16 -1.06 5.72 -90.62 -0.52 -1.58 16 25 C -0.17 -1.15 10.18 -26.69 -0.27 -1.42 16 26 C -0.17 -0.91 10.25 -26.70 -0.27 -1.18 16 27 N -0.45 -5.72 11.06 -7.66 -0.08 -5.80 16 28 H 0.06 1.23 7.80 -51.93 -0.40 0.83 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.86 7.78 -51.93 -0.40 0.46 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 1.10 7.25 -51.93 -0.38 0.72 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.04 0.77 7.90 -51.93 -0.41 0.36 16 37 H 0.05 1.26 2.98 -51.93 -0.15 1.11 16 38 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.41 5.83 8.20 -40.82 -0.33 5.50 16 43 H 0.23 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 45 H 0.11 0.64 7.88 -51.93 -0.41 0.23 16 46 H 0.11 0.81 8.07 -51.93 -0.42 0.39 16 47 H 0.10 0.65 8.03 -51.93 -0.42 0.23 16 48 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 411.16 15.07 6.20 6.20 Total: -1.00 -32.62 411.16 -7.87 -40.48 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -8.36 Total: 4.47 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.62 Total: -0.03 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.01 Total: -57.38 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.16 Total: -11.71 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.24 Total: 17.96 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.62 -7.87 -40.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753292103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.578 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds