Wall clock time and date at job start Tue Mar 31 2020 19:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47365 * 2 1 4 4 N 1.46497 * 109.47269 * 120.00218 * 2 1 3 5 5 C 1.36937 * 119.99776 * 301.89910 * 4 2 1 6 6 H 1.07995 * 120.00205 * 324.85975 * 5 4 2 7 7 C 1.38816 * 119.99868 * 144.85251 * 5 4 2 8 8 N 1.31624 * 119.99661 * 157.16485 * 7 5 4 9 9 Si 1.86798 * 120.00301 * 337.17413 * 7 5 4 10 10 H 1.48497 * 109.47303 * 95.34897 * 9 7 5 11 11 H 1.48493 * 109.47119 * 215.35101 * 9 7 5 12 12 H 1.48500 * 109.46912 * 335.34947 * 9 7 5 13 13 C 1.46500 * 120.00347 * 121.90030 * 4 2 1 14 14 C 1.52998 * 109.47042 * 90.00065 * 13 4 2 15 15 C 1.53002 * 109.46743 * 180.02562 * 14 13 4 16 16 N 1.46501 * 109.47259 * 179.97438 * 15 14 13 17 17 C 1.34771 * 120.00675 * 179.97438 * 16 15 14 18 18 O 1.21614 * 119.99622 * 0.02562 * 17 16 15 19 19 C 1.47416 * 120.00563 * 180.27823 * 17 16 15 20 20 C 1.36092 * 126.45301 * 179.75284 * 19 17 16 21 21 O 1.34252 * 106.95199 * 179.97438 * 20 19 17 22 22 C 1.34048 * 108.22710 * 0.02562 * 21 20 19 23 23 C 1.50697 * 125.38144 * 179.97438 * 22 21 20 24 24 C 1.53001 * 109.47561 * 270.02734 * 23 22 21 25 25 C 1.53008 * 117.49672 * 243.74681 * 24 23 22 26 26 C 1.52996 * 117.50093 * 175.08904 * 24 23 22 27 27 N 1.29935 * 109.24334 * 359.71892 * 22 21 20 28 28 H 1.09002 * 109.47080 * 305.32970 * 1 2 3 29 29 H 1.09002 * 109.46650 * 65.32966 * 1 2 3 30 30 H 1.09000 * 109.46913 * 185.32327 * 1 2 3 31 31 H 1.09006 * 109.47293 * 240.00378 * 2 1 3 32 32 H 1.09001 * 109.47459 * 175.18510 * 3 2 1 33 33 H 1.09000 * 109.47074 * 295.19074 * 3 2 1 34 34 H 1.09002 * 109.46837 * 55.18749 * 3 2 1 35 35 H 0.97000 * 119.99976 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.46573 * 329.99795 * 13 4 2 37 37 H 1.08997 * 109.47142 * 210.00356 * 13 4 2 38 38 H 1.08994 * 109.46871 * 60.00290 * 14 13 4 39 39 H 1.08991 * 109.47168 * 299.99790 * 14 13 4 40 40 H 1.09007 * 109.47130 * 60.00128 * 15 14 13 41 41 H 1.08997 * 109.47246 * 300.00171 * 15 14 13 42 42 H 0.97010 * 119.99395 * 0.02562 * 16 15 14 43 43 H 1.08000 * 126.52089 * 0.02821 * 20 19 17 44 44 H 1.09008 * 109.46828 * 30.02591 * 23 22 21 45 45 H 1.08999 * 109.47385 * 150.01939 * 23 22 21 46 46 H 1.08997 * 115.54913 * 29.40866 * 24 23 22 47 47 H 1.09007 * 117.49743 * 359.97438 * 25 24 23 48 48 H 1.08997 * 117.49754 * 145.01703 * 25 24 23 49 49 H 1.09006 * 117.49730 * 214.97908 * 26 24 23 50 50 H 1.09003 * 117.49893 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6557 -0.2459 2.4395 6 1 1.5323 0.8117 2.6199 7 6 1.4466 -1.1546 3.4679 8 7 1.5442 -0.7640 4.7210 9 14 1.0272 -2.9316 3.0733 10 1 2.2672 -3.7484 3.0904 11 1 0.0770 -3.4529 4.0884 12 1 0.4039 -3.0059 1.7275 13 6 2.8946 -1.8570 1.0621 14 6 4.3542 -1.3987 1.0431 15 6 5.2693 -2.6169 0.9025 16 7 6.6670 -2.1781 0.8837 17 6 7.6567 -3.0855 0.7671 18 8 7.3895 -4.2685 0.6771 19 6 9.0633 -2.6445 0.7544 20 6 10.1601 -3.4431 0.6482 21 8 11.2345 -2.6385 0.6773 22 6 10.8078 -1.3736 0.7992 23 6 11.6940 -0.1569 0.8703 24 6 12.0457 0.1334 2.3307 25 6 11.5502 1.4521 2.9280 26 6 13.0354 1.2669 2.6072 27 7 9.5092 -1.3619 0.8409 28 1 -0.3633 0.5943 0.8384 29 1 -0.3633 0.4290 -0.9339 30 1 -0.3633 -1.0232 0.0953 31 1 1.8934 -0.5138 -0.8901 32 1 3.1266 1.4437 0.0863 33 1 1.7488 1.9308 -0.9299 34 1 1.6080 1.9806 0.8438 35 1 1.3984 -1.3990 5.4397 36 1 2.6654 -2.3787 0.1329 37 1 2.7358 -2.5295 1.9051 38 1 4.5833 -0.8770 1.9723 39 1 4.5130 -0.7263 0.2002 40 1 5.0400 -3.1382 -0.0269 41 1 5.1107 -3.2897 1.7452 42 1 6.8801 -1.2345 0.9559 43 1 10.1652 -4.5192 0.5570 44 1 12.6085 -0.3399 0.3059 45 1 11.1703 0.6995 0.4455 46 1 12.0792 -0.7355 2.9879 47 1 10.9741 2.1130 2.2803 48 1 11.2582 1.4507 3.9781 49 1 13.7200 1.1437 3.4466 50 1 13.4364 1.8055 1.7486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753292103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:12 Heat of formation + Delta-G solvation = 0.505414 kcal Electronic energy + Delta-G solvation = -28479.693197 eV Core-core repulsion = 24509.094474 eV Total energy + Delta-G solvation = -3970.598723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.52915 -40.68929 -38.79988 -38.48751 -36.50748 -35.96991 -34.31234 -33.52568 -32.82284 -30.98585 -29.01295 -27.78035 -27.33789 -25.60909 -24.37631 -23.22812 -23.01236 -22.67079 -21.87077 -21.23926 -21.16486 -19.27587 -18.41193 -17.90732 -17.61834 -17.32717 -17.07749 -16.69040 -16.55319 -16.35297 -15.49026 -15.46138 -15.17656 -14.92623 -14.78285 -14.65389 -14.55139 -14.08277 -14.02433 -13.76896 -13.54213 -13.33890 -12.89976 -12.79498 -12.69252 -12.59118 -12.39047 -12.33640 -12.28599 -12.17633 -12.01615 -11.94569 -11.69784 -11.49675 -11.37327 -11.29438 -11.19072 -10.90485 -10.55000 -10.33448 -10.02171 -8.75086 -8.14501 -5.47814 -0.00005 0.86971 1.30533 1.41383 1.49309 1.50774 1.97861 2.14200 2.44645 2.73423 2.91297 3.07777 3.34955 3.59342 3.72748 3.79171 3.99959 4.02404 4.09737 4.11662 4.25470 4.29587 4.37277 4.42573 4.49695 4.55163 4.58252 4.68000 4.69901 4.73169 4.73457 4.78628 4.85935 4.96444 4.99385 5.08207 5.09812 5.14852 5.19848 5.22419 5.25907 5.26383 5.30337 5.39984 5.58517 5.64958 6.01263 6.22451 6.26305 6.52309 6.97586 7.05779 7.72402 8.12122 9.05638 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.002438 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.528898 B =11482.273196 C =12098.079217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.156 3.844 3 C -0.145 4.145 4 N -0.612 5.612 5 C -0.229 4.229 6 H 0.047 0.953 7 C -0.024 4.024 8 N -0.952 5.952 9 Si 0.932 3.068 10 H -0.281 1.281 11 H -0.318 1.318 12 H -0.256 1.256 13 C 0.134 3.866 14 C -0.127 4.127 15 C 0.126 3.874 16 N -0.702 5.702 17 C 0.596 3.404 18 O -0.572 6.572 19 C -0.101 4.101 20 C 0.031 3.969 21 O -0.192 6.192 22 C 0.208 3.792 23 C 0.011 3.989 24 C -0.165 4.165 25 C -0.188 4.188 26 C -0.154 4.154 27 N -0.480 5.480 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.029 0.971 35 H 0.258 0.742 36 H 0.070 0.930 37 H 0.029 0.971 38 H 0.049 0.951 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.415 0.585 43 H 0.257 0.743 44 H 0.127 0.873 45 H 0.119 0.881 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.087 0.913 49 H 0.102 0.898 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.990 1.359 -12.532 27.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.051 3.949 3 C -0.204 4.204 4 N -0.334 5.334 5 C -0.359 4.359 6 H 0.065 0.935 7 C -0.219 4.219 8 N -0.597 5.597 9 Si 0.763 3.237 10 H -0.208 1.208 11 H -0.247 1.247 12 H -0.180 1.180 13 C 0.008 3.992 14 C -0.167 4.167 15 C 0.002 3.998 16 N -0.352 5.352 17 C 0.383 3.617 18 O -0.452 6.452 19 C -0.220 4.220 20 C -0.044 4.044 21 O -0.077 6.077 22 C -0.002 4.002 23 C -0.027 4.027 24 C -0.185 4.185 25 C -0.225 4.225 26 C -0.191 4.191 27 N -0.209 5.209 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.251 0.749 43 H 0.273 0.727 44 H 0.145 0.855 45 H 0.137 0.863 46 H 0.113 0.887 47 H 0.120 0.880 48 H 0.105 0.895 49 H 0.121 0.879 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 23.355 1.061 -12.427 26.476 hybrid contribution -0.341 -1.187 0.933 1.548 sum 23.013 -0.126 -11.493 25.724 Atomic orbital electron populations 1.22065 0.97234 1.00400 1.00868 1.20706 0.92925 0.92959 0.88303 1.22056 1.00331 0.97285 1.00680 1.44402 1.53118 1.33649 1.02270 1.18517 1.39686 0.91626 0.86068 0.93509 1.25924 0.99873 1.01235 0.94910 1.69995 1.53656 1.36576 0.99521 0.86043 0.77303 0.82787 0.77587 1.20847 1.24730 1.18021 1.21174 0.89135 0.89455 0.99395 1.22140 0.95556 0.96668 1.02327 1.21349 0.79191 0.97410 1.01818 1.45842 1.05985 1.11091 1.72264 1.17052 0.83561 0.85080 0.75999 1.90792 1.84235 1.17383 1.52811 1.21653 0.95441 0.90414 1.14514 1.25773 0.82068 0.98581 0.97935 1.84432 1.36265 1.18384 1.68658 1.26855 0.89754 0.85336 0.98222 1.19953 0.97592 0.88282 0.96839 1.22103 1.07030 0.93809 0.95516 1.23170 0.98308 0.99084 1.01980 1.23118 0.91967 0.99725 1.04279 1.70748 1.10525 1.21130 1.18540 0.94678 0.90739 0.94671 0.90211 0.93604 0.90898 0.95171 0.93298 0.91126 0.95315 0.93265 0.90045 0.90296 0.93341 0.74881 0.72702 0.85455 0.86302 0.88721 0.87951 0.89459 0.87939 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 9.04 71.98 0.65 -4.53 16 2 C 0.16 5.61 3.36 44.99 0.15 5.76 16 3 C -0.14 -4.81 9.11 71.98 0.66 -4.15 16 4 N -0.61 -27.09 2.06 -678.04 -1.40 -28.49 16 5 C -0.23 -12.49 8.74 84.03 0.73 -11.75 16 6 H 0.05 2.84 7.17 -2.91 -0.02 2.82 16 7 C -0.02 -1.40 5.31 84.86 0.45 -0.95 16 8 N -0.95 -59.91 13.97 21.65 0.30 -59.61 16 9 Si 0.93 46.90 24.97 68.60 1.71 48.61 16 10 H -0.28 -13.72 6.66 99.48 0.66 -13.05 16 11 H -0.32 -16.54 7.11 99.48 0.71 -15.83 16 12 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 13 C 0.13 5.39 4.49 86.38 0.39 5.78 16 14 C -0.13 -4.43 5.65 30.59 0.17 -4.26 16 15 C 0.13 4.11 5.67 86.38 0.49 4.60 16 16 N -0.70 -21.29 5.55 -466.37 -2.59 -23.88 16 17 C 0.60 18.63 7.81 86.66 0.68 19.31 16 18 O -0.57 -20.63 16.89 -4.07 -0.07 -20.69 16 19 C -0.10 -2.63 6.99 40.41 0.28 -2.34 16 20 C 0.03 0.60 11.95 67.32 0.80 1.40 16 21 O -0.19 -3.43 10.73 0.45 0.00 -3.43 16 22 C 0.21 3.83 7.51 88.39 0.66 4.50 16 23 C 0.01 0.11 6.12 29.85 0.18 0.30 16 24 C -0.17 -1.96 5.72 -10.79 -0.06 -2.03 16 25 C -0.19 -2.37 10.18 30.62 0.31 -2.06 16 26 C -0.15 -1.28 10.25 30.62 0.31 -0.96 16 27 N -0.48 -11.66 11.06 -293.04 -3.24 -14.90 16 28 H 0.03 1.39 7.80 -2.39 -0.02 1.37 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 2.43 7.78 -2.38 -0.02 2.41 16 32 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.03 1.14 7.25 -2.39 -0.02 1.12 16 35 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.07 2.43 7.90 -2.39 -0.02 2.41 16 37 H 0.03 1.32 2.98 -2.39 -0.01 1.31 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 41 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.41 11.68 8.20 -92.70 -0.76 10.92 16 43 H 0.26 3.34 8.06 -2.91 -0.02 3.31 16 44 H 0.13 0.65 8.14 -2.38 -0.02 0.63 16 45 H 0.12 1.09 7.88 -2.39 -0.02 1.07 16 46 H 0.09 1.36 8.07 -2.39 -0.02 1.34 16 47 H 0.10 1.23 8.03 -2.38 -0.02 1.21 16 48 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 50 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -73.22 411.16 1.72 -71.50 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.13 Total: 22.28 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 6.87 Total: 8.61 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -6.93 Total: -126.88 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.06 Total: -24.12 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.71 Total: 48.61 kcal Total: -73.22 1.72 -71.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753292103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.005 kcal (2) G-P(sol) polarization free energy of solvation -73.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds