Wall clock time and date at job start Tue Mar 31 2020 19:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47407 * 2 1 4 4 N 1.46907 * 109.47002 * 300.00020 * 3 2 1 5 5 C 1.46903 * 110.99570 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46581 * 180.02562 * 5 4 3 7 7 O 1.21296 * 120.00145 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99907 * 179.97438 * 6 5 4 9 9 C 1.37094 * 120.00176 * 179.97438 * 8 6 5 10 10 H 1.08001 * 120.00080 * 0.02562 * 9 8 6 11 11 C 1.38953 * 120.00075 * 179.97438 * 9 8 6 12 12 N 1.31409 * 119.99756 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99784 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47111 * 90.00453 * 13 11 9 15 15 H 1.48504 * 109.46910 * 210.00495 * 13 11 9 16 16 H 1.48496 * 109.47140 * 330.00164 * 13 11 9 17 17 N 1.46505 * 109.47071 * 239.99793 * 2 1 3 18 18 C 1.34777 * 119.99857 * 183.94502 * 17 2 1 19 19 O 1.21277 * 120.00108 * 5.19184 * 18 17 2 20 20 C 1.50706 * 119.99706 * 185.19447 * 18 17 2 21 21 H 1.08997 * 115.54719 * 325.67262 * 20 18 17 22 22 C 1.52999 * 117.49501 * 111.37975 * 20 18 17 23 23 C 1.52997 * 117.49536 * 179.97438 * 20 18 17 24 24 C 1.52996 * 138.58195 * 121.62086 * 23 20 18 25 25 C 1.52988 * 138.58939 * 23.40954 * 23 20 18 26 26 C 1.53000 * 109.46983 * 120.00407 * 2 1 3 27 27 C 1.52997 * 117.50198 * 57.07517 * 26 2 1 28 28 C 1.52997 * 60.00204 * 252.51061 * 27 26 2 29 29 H 1.08992 * 109.47077 * 300.00174 * 1 2 3 30 30 H 1.08999 * 109.46940 * 59.99938 * 1 2 3 31 31 H 1.09005 * 109.47253 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47332 * 59.99774 * 3 2 1 33 33 H 1.09000 * 109.47217 * 179.97438 * 3 2 1 34 34 H 1.00894 * 110.99702 * 56.04570 * 4 3 2 35 35 H 1.08996 * 109.47042 * 299.99583 * 5 4 3 36 36 H 1.09000 * 109.47671 * 59.99868 * 5 4 3 37 37 H 0.97003 * 119.99783 * 0.02562 * 8 6 5 38 38 H 0.97007 * 119.99985 * 179.97438 * 12 11 9 39 39 H 0.96996 * 119.99832 * 3.94901 * 17 2 1 40 40 H 1.09001 * 117.49952 * 214.97161 * 22 20 18 41 41 H 1.09000 * 117.50336 * 0.02562 * 22 20 18 42 42 H 1.08991 * 117.50254 * 336.58938 * 24 23 20 43 43 H 1.08997 * 117.49497 * 121.62157 * 24 23 20 44 44 H 1.08997 * 117.49895 * 238.37973 * 25 23 20 45 45 H 1.09007 * 117.50121 * 23.37231 * 25 23 20 46 46 H 1.09007 * 115.55919 * 202.77128 * 26 2 1 47 47 H 1.08996 * 117.50094 * 145.01974 * 27 26 2 48 48 H 1.09001 * 117.50082 * 0.02562 * 27 26 2 49 49 H 1.09006 * 117.49896 * 107.48206 * 28 27 26 50 50 H 1.08997 * 117.50323 * 252.51002 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.5504 2.1349 -1.1995 5 6 2.0220 3.5258 -1.2337 6 6 1.5004 4.2026 -2.4750 7 8 0.8046 3.5868 -3.2547 8 7 1.8070 5.4922 -2.7188 9 6 1.3329 6.1078 -3.8483 10 1 0.7134 5.5596 -4.5426 11 6 1.6485 7.4376 -4.0993 12 7 2.4019 8.1048 -3.2543 13 14 1.0019 8.2765 -5.6380 14 1 -0.3125 8.9025 -5.3453 15 1 1.9626 9.3223 -6.0724 16 1 0.8418 7.2716 -6.7195 17 7 2.0183 -0.6907 -1.1962 18 6 3.3408 -0.8838 -1.3701 19 8 4.1196 -0.5711 -0.4946 20 6 3.8518 -1.4884 -2.6525 21 1 3.2050 -2.2373 -3.1095 22 6 4.6574 -0.5844 -3.5878 23 6 5.3633 -1.6815 -2.7894 24 6 6.3573 -2.8188 -3.0328 25 6 6.5871 -1.8346 -1.8841 26 6 2.0400 -0.7213 1.2492 27 6 1.5800 -2.1638 1.4693 28 6 1.0218 -1.0408 2.3457 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4424 0.0005 34 1 0.5439 2.0925 -1.2559 35 1 1.6589 4.0543 -0.3523 36 1 3.1119 3.5399 -1.2424 37 1 2.3637 5.9846 -2.0954 38 1 2.6226 9.0330 -3.4297 39 1 1.3899 -1.0089 -1.8630 40 1 4.5408 -0.7385 -4.6605 41 1 4.8182 0.4474 -3.2754 42 1 6.0397 -3.8288 -2.7742 43 1 7.0102 -2.7390 -3.9020 44 1 7.3911 -1.1075 -1.9975 45 1 6.4205 -2.1969 -0.8696 46 1 3.0516 -0.4623 1.5618 47 1 2.2890 -2.8539 1.9266 48 1 0.9144 -2.5992 0.7240 49 1 -0.0114 -0.7370 2.1770 50 1 1.3635 -0.9920 3.3795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753524647.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:29 Heat of formation + Delta-G solvation = 19.701361 kcal Electronic energy + Delta-G solvation = -29551.892192 eV Core-core repulsion = 25582.125867 eV Total energy + Delta-G solvation = -3969.766324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.49875 -38.77999 -38.13809 -36.98774 -35.50720 -34.00323 -33.53334 -32.61795 -31.21359 -30.39901 -27.50602 -25.89910 -24.43400 -23.79628 -22.52073 -22.47610 -21.90755 -20.71079 -19.35963 -19.13501 -18.89282 -17.87963 -17.04040 -16.52726 -16.44179 -15.57234 -15.16190 -15.07709 -14.91305 -14.79124 -14.46219 -14.30612 -14.07029 -13.82560 -13.39742 -13.27094 -12.86729 -12.75334 -12.41370 -12.36533 -11.88386 -11.73231 -11.63339 -11.56013 -11.49740 -11.43841 -11.38871 -11.02190 -10.92513 -10.54533 -10.38902 -10.28345 -10.22317 -10.19985 -10.13465 -10.03816 -9.49395 -9.38609 -8.89307 -8.40383 -7.99346 -7.92850 -6.40053 -3.80894 2.66857 3.01435 3.18359 3.26867 3.32785 3.64711 3.70996 3.92728 3.93587 4.08059 4.24851 4.27183 4.61347 4.70793 4.76705 4.80120 4.85856 4.96551 5.02930 5.09278 5.16346 5.27214 5.28233 5.38408 5.46150 5.49224 5.52334 5.56969 5.63124 5.65616 5.68199 5.73819 5.75714 5.84469 5.87964 5.96491 5.98950 6.00705 6.06200 6.07624 6.09543 6.23746 6.29883 6.63822 7.26219 7.56341 7.68866 7.73933 8.08050 8.44470 8.63227 9.19401 9.56566 10.07971 10.77754 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010871 B = 0.002931 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.043315 B = 9549.157352 C =11344.380655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.215 3.785 3 C 0.051 3.949 4 N -0.662 5.662 5 C 0.051 3.949 6 C 0.443 3.557 7 O -0.584 6.584 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.269 1.269 17 N -0.702 5.702 18 C 0.554 3.446 19 O -0.536 6.536 20 C -0.139 4.139 21 H 0.118 0.882 22 C -0.094 4.094 23 C -0.201 4.201 24 C -0.134 4.134 25 C -0.113 4.113 26 C -0.146 4.146 27 C -0.170 4.170 28 C -0.185 4.185 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.087 0.913 34 H 0.344 0.656 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.399 0.601 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.116 0.884 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.099 0.901 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.865 -20.999 7.937 22.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.129 3.871 3 C -0.079 4.079 4 N -0.295 5.295 5 C -0.081 4.081 6 C 0.228 3.772 7 O -0.468 6.468 8 N -0.201 5.201 9 C -0.428 4.428 10 H 0.120 0.880 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.205 1.205 15 H -0.209 1.209 16 H -0.194 1.194 17 N -0.352 5.352 18 C 0.341 3.659 19 O -0.412 6.412 20 C -0.160 4.160 21 H 0.136 0.864 22 C -0.131 4.131 23 C -0.202 4.202 24 C -0.170 4.170 25 C -0.150 4.150 26 C -0.165 4.165 27 C -0.208 4.208 28 C -0.222 4.222 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.105 0.895 34 H 0.164 0.836 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.233 0.767 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.134 0.866 47 H 0.107 0.893 48 H 0.109 0.891 49 H 0.118 0.882 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.516 -21.179 7.618 22.648 hybrid contribution -0.864 1.126 0.006 1.419 sum 1.653 -20.053 7.624 21.517 Atomic orbital electron populations 1.22250 0.93773 1.02777 1.03591 1.19665 0.93099 0.90818 0.83546 1.22326 1.02029 0.92334 0.91220 1.60049 1.16970 1.13916 1.38529 1.21652 1.00974 0.88782 0.96721 1.19808 0.85875 0.82959 0.88513 1.90505 1.42100 1.64681 1.49537 1.41869 1.46103 1.09431 1.22697 1.19692 1.29069 0.94129 0.99936 0.87963 1.25260 0.96985 0.96605 0.99120 1.69618 1.37080 1.10985 1.36637 0.85866 0.78318 0.78853 0.81301 1.20459 1.20932 1.19410 1.45759 1.07000 1.59254 1.23199 1.19426 0.82045 0.77489 0.86982 1.90620 1.56007 1.51315 1.43286 1.21939 0.92923 1.03674 0.97489 0.86433 1.22646 0.98121 0.95559 0.96752 1.21141 0.90002 1.02543 1.06484 1.22737 0.99758 0.93932 1.00609 1.22544 0.96229 1.00804 0.95377 1.22591 0.99896 0.97820 0.96229 1.22788 1.03564 0.91515 1.02898 1.23171 0.99300 1.03690 0.96050 0.90634 0.90740 0.91746 0.94865 0.89487 0.83559 0.94068 0.89788 0.77478 0.91892 0.76687 0.87736 0.87716 0.88836 0.88517 0.88691 0.88422 0.86551 0.89295 0.89118 0.88226 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 6.88 37.16 0.26 -1.29 16 2 C 0.21 2.41 0.65 -131.82 -0.09 2.33 16 3 C 0.05 0.71 4.52 -3.82 -0.02 0.69 16 4 N -0.66 -10.77 5.93 -115.05 -0.68 -11.45 16 5 C 0.05 0.95 6.17 -4.97 -0.03 0.92 16 6 C 0.44 10.56 7.82 -10.98 -0.09 10.47 16 7 O -0.58 -15.72 15.78 5.54 0.09 -15.63 16 8 N -0.56 -14.49 5.29 -10.96 -0.06 -14.55 16 9 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 10 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 13 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 N -0.70 -7.98 4.86 -47.61 -0.23 -8.21 16 18 C 0.55 7.34 7.02 -10.98 -0.08 7.26 16 19 O -0.54 -8.49 13.07 5.56 0.07 -8.42 16 20 C -0.14 -1.60 6.19 -91.77 -0.57 -2.17 16 21 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 22 C -0.09 -1.13 10.23 -26.76 -0.27 -1.40 16 23 C -0.20 -2.32 5.05 -154.54 -0.78 -3.10 16 24 C -0.13 -1.23 10.53 -26.73 -0.28 -1.51 16 25 C -0.11 -1.23 10.16 -26.74 -0.27 -1.50 16 26 C -0.15 -1.59 4.05 -90.62 -0.37 -1.96 16 27 C -0.17 -1.59 9.81 -26.73 -0.26 -1.85 16 28 C -0.18 -1.63 9.61 -26.73 -0.26 -1.89 16 29 H 0.07 0.65 6.84 -51.93 -0.35 0.30 16 30 H 0.07 0.77 6.57 -51.93 -0.34 0.42 16 31 H 0.06 0.51 7.01 -51.93 -0.36 0.14 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 1.39 6.65 -51.93 -0.35 1.05 16 34 H 0.34 5.60 6.47 -39.29 -0.25 5.35 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.40 3.88 8.48 -40.82 -0.35 3.53 16 40 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.12 1.54 7.18 -51.93 -0.37 1.16 16 47 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.09 0.79 7.42 -51.93 -0.39 0.40 16 49 H 0.10 0.79 5.87 -51.93 -0.30 0.48 16 50 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 406.29 15.07 6.12 6.12 Total: -1.00 -32.32 406.29 -10.31 -42.62 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: -7.98 Total: 20.51 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -3.34 Total: -3.05 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.25 Total: -58.28 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.16 Total: -24.05 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.32 -10.31 -42.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753524647.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.323 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds