Wall clock time and date at job start Tue Mar 31 2020 19:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47407 * 2 1 4 4 N 1.46907 * 109.47002 * 300.00020 * 3 2 1 5 5 C 1.46903 * 110.99570 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46581 * 180.02562 * 5 4 3 7 7 O 1.21296 * 120.00145 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99907 * 179.97438 * 6 5 4 9 9 C 1.37094 * 120.00176 * 179.97438 * 8 6 5 10 10 H 1.08001 * 120.00080 * 0.02562 * 9 8 6 11 11 C 1.38953 * 120.00075 * 179.97438 * 9 8 6 12 12 N 1.31409 * 119.99756 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99784 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47111 * 90.00453 * 13 11 9 15 15 H 1.48504 * 109.46910 * 210.00495 * 13 11 9 16 16 H 1.48496 * 109.47140 * 330.00164 * 13 11 9 17 17 N 1.46505 * 109.47071 * 239.99793 * 2 1 3 18 18 C 1.34777 * 119.99857 * 183.94502 * 17 2 1 19 19 O 1.21277 * 120.00108 * 5.19184 * 18 17 2 20 20 C 1.50706 * 119.99706 * 185.19447 * 18 17 2 21 21 H 1.08997 * 115.54719 * 325.67262 * 20 18 17 22 22 C 1.52999 * 117.49501 * 111.37975 * 20 18 17 23 23 C 1.52997 * 117.49536 * 179.97438 * 20 18 17 24 24 C 1.52996 * 138.58195 * 121.62086 * 23 20 18 25 25 C 1.52988 * 138.58939 * 23.40954 * 23 20 18 26 26 C 1.53000 * 109.46983 * 120.00407 * 2 1 3 27 27 C 1.52997 * 117.50198 * 57.07517 * 26 2 1 28 28 C 1.52997 * 60.00204 * 252.51061 * 27 26 2 29 29 H 1.08992 * 109.47077 * 300.00174 * 1 2 3 30 30 H 1.08999 * 109.46940 * 59.99938 * 1 2 3 31 31 H 1.09005 * 109.47253 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47332 * 59.99774 * 3 2 1 33 33 H 1.09000 * 109.47217 * 179.97438 * 3 2 1 34 34 H 1.00894 * 110.99702 * 56.04570 * 4 3 2 35 35 H 1.08996 * 109.47042 * 299.99583 * 5 4 3 36 36 H 1.09000 * 109.47671 * 59.99868 * 5 4 3 37 37 H 0.97003 * 119.99783 * 0.02562 * 8 6 5 38 38 H 0.97007 * 119.99985 * 179.97438 * 12 11 9 39 39 H 0.96996 * 119.99832 * 3.94901 * 17 2 1 40 40 H 1.09001 * 117.49952 * 214.97161 * 22 20 18 41 41 H 1.09000 * 117.50336 * 0.02562 * 22 20 18 42 42 H 1.08991 * 117.50254 * 336.58938 * 24 23 20 43 43 H 1.08997 * 117.49497 * 121.62157 * 24 23 20 44 44 H 1.08997 * 117.49895 * 238.37973 * 25 23 20 45 45 H 1.09007 * 117.50121 * 23.37231 * 25 23 20 46 46 H 1.09007 * 115.55919 * 202.77128 * 26 2 1 47 47 H 1.08996 * 117.50094 * 145.01974 * 27 26 2 48 48 H 1.09001 * 117.50082 * 0.02562 * 27 26 2 49 49 H 1.09006 * 117.49896 * 107.48206 * 28 27 26 50 50 H 1.08997 * 117.50323 * 252.51002 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.5504 2.1349 -1.1995 5 6 2.0220 3.5258 -1.2337 6 6 1.5004 4.2026 -2.4750 7 8 0.8046 3.5868 -3.2547 8 7 1.8070 5.4922 -2.7188 9 6 1.3329 6.1078 -3.8483 10 1 0.7134 5.5596 -4.5426 11 6 1.6485 7.4376 -4.0993 12 7 2.4019 8.1048 -3.2543 13 14 1.0019 8.2765 -5.6380 14 1 -0.3125 8.9025 -5.3453 15 1 1.9626 9.3223 -6.0724 16 1 0.8418 7.2716 -6.7195 17 7 2.0183 -0.6907 -1.1962 18 6 3.3408 -0.8838 -1.3701 19 8 4.1196 -0.5711 -0.4946 20 6 3.8518 -1.4884 -2.6525 21 1 3.2050 -2.2373 -3.1095 22 6 4.6574 -0.5844 -3.5878 23 6 5.3633 -1.6815 -2.7894 24 6 6.3573 -2.8188 -3.0328 25 6 6.5871 -1.8346 -1.8841 26 6 2.0400 -0.7213 1.2492 27 6 1.5800 -2.1638 1.4693 28 6 1.0218 -1.0408 2.3457 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4424 0.0005 34 1 0.5439 2.0925 -1.2559 35 1 1.6589 4.0543 -0.3523 36 1 3.1119 3.5399 -1.2424 37 1 2.3637 5.9846 -2.0954 38 1 2.6226 9.0330 -3.4297 39 1 1.3899 -1.0089 -1.8630 40 1 4.5408 -0.7385 -4.6605 41 1 4.8182 0.4474 -3.2754 42 1 6.0397 -3.8288 -2.7742 43 1 7.0102 -2.7390 -3.9020 44 1 7.3911 -1.1075 -1.9975 45 1 6.4205 -2.1969 -0.8696 46 1 3.0516 -0.4623 1.5618 47 1 2.2890 -2.8539 1.9266 48 1 0.9144 -2.5992 0.7240 49 1 -0.0114 -0.7370 2.1770 50 1 1.3635 -0.9920 3.3795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753524647.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:28 Heat of formation + Delta-G solvation = -2.095683 kcal Electronic energy + Delta-G solvation = -29552.837383 eV Core-core repulsion = 25582.125867 eV Total energy + Delta-G solvation = -3970.711515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.46968 -40.15829 -39.55952 -37.91594 -36.76670 -35.87137 -34.76181 -33.52069 -33.25873 -31.43703 -28.82428 -27.26760 -25.90999 -25.02362 -23.30425 -23.27002 -22.93062 -21.64818 -21.16090 -20.05266 -20.00883 -19.80589 -18.02064 -17.97438 -17.36998 -17.19812 -16.45698 -16.21680 -15.95151 -15.94589 -15.83709 -15.57524 -15.51495 -14.96241 -14.80061 -14.56256 -14.31682 -13.76761 -13.50422 -13.45938 -13.40936 -13.09597 -12.98230 -12.81168 -12.59810 -12.46342 -12.41452 -12.34915 -12.13780 -12.12460 -11.86029 -11.50898 -11.35575 -11.10809 -11.08501 -11.01035 -10.89522 -10.41376 -10.34568 -10.02655 -9.84858 -9.33342 -8.47130 -5.96227 1.37671 1.41338 1.54512 1.66182 2.03224 2.12036 2.28367 2.80333 2.81454 2.89744 3.11472 3.19842 3.38760 3.47820 3.65497 3.85377 3.92274 3.93903 3.99987 4.15860 4.19547 4.23538 4.30445 4.40004 4.45004 4.50645 4.53235 4.61137 4.66408 4.71861 4.75630 4.78694 4.80885 4.83107 4.93022 4.98061 5.01875 5.02356 5.06288 5.24175 5.27803 5.28142 5.38757 5.40085 5.68397 5.84491 6.05820 6.43646 6.58370 6.76685 7.11160 7.46821 7.54445 8.08812 8.70460 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010871 B = 0.002931 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.043315 B = 9549.157352 C =11344.380655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.218 3.782 3 C 0.057 3.943 4 N -0.666 5.666 5 C 0.065 3.935 6 C 0.442 3.558 7 O -0.616 6.616 8 N -0.574 5.574 9 C -0.333 4.333 10 H 0.081 0.919 11 C -0.014 4.014 12 N -0.922 5.922 13 Si 0.994 3.006 14 H -0.270 1.270 15 H -0.272 1.272 16 H -0.271 1.271 17 N -0.695 5.695 18 C 0.546 3.454 19 O -0.568 6.568 20 C -0.139 4.139 21 H 0.145 0.855 22 C -0.103 4.103 23 C -0.219 4.219 24 C -0.105 4.105 25 C -0.129 4.129 26 C -0.162 4.162 27 C -0.164 4.164 28 C -0.169 4.169 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.346 0.654 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.395 0.605 38 H 0.277 0.723 39 H 0.408 0.592 40 H 0.122 0.878 41 H 0.074 0.926 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.102 0.898 49 H 0.115 0.885 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.803 -22.221 7.862 23.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.132 3.868 3 C -0.073 4.073 4 N -0.300 5.300 5 C -0.068 4.068 6 C 0.230 3.770 7 O -0.503 6.503 8 N -0.211 5.211 9 C -0.462 4.462 10 H 0.099 0.901 11 C -0.214 4.214 12 N -0.563 5.563 13 Si 0.818 3.182 14 H -0.195 1.195 15 H -0.197 1.197 16 H -0.196 1.196 17 N -0.345 5.345 18 C 0.333 3.667 19 O -0.447 6.447 20 C -0.159 4.159 21 H 0.162 0.838 22 C -0.140 4.140 23 C -0.220 4.220 24 C -0.142 4.142 25 C -0.165 4.165 26 C -0.181 4.181 27 C -0.201 4.201 28 C -0.206 4.206 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.167 0.833 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.228 0.772 38 H 0.087 0.913 39 H 0.244 0.756 40 H 0.140 0.860 41 H 0.092 0.908 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.111 0.889 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.105 0.895 48 H 0.120 0.880 49 H 0.133 0.867 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.445 -22.410 7.562 23.696 hybrid contribution -0.487 1.491 0.093 1.571 sum 0.958 -20.920 7.656 22.297 Atomic orbital electron populations 1.22230 0.91757 1.04164 1.03672 1.19650 0.94419 0.89021 0.83729 1.22292 1.00447 0.94076 0.90489 1.60008 1.17123 1.12625 1.40248 1.21483 1.00928 0.89830 0.94552 1.20683 0.84596 0.82286 0.89468 1.90473 1.43400 1.65261 1.51126 1.41944 1.46510 1.10200 1.22445 1.19686 1.30459 0.95053 1.01005 0.90064 1.26080 0.96735 0.96602 1.01986 1.69686 1.37290 1.11449 1.37901 0.84908 0.78177 0.77734 0.77412 1.19492 1.19688 1.19585 1.45761 1.06675 1.58554 1.23507 1.19813 0.82397 0.77232 0.87257 1.90609 1.56893 1.52705 1.44510 1.22041 0.93532 1.03840 0.96525 0.83754 1.22574 0.99416 0.94226 0.97779 1.21339 0.90255 1.03536 1.06841 1.22856 0.97825 0.93715 0.99773 1.22565 0.96260 1.02103 0.95617 1.22360 0.99232 0.99461 0.97093 1.22839 1.03433 0.90720 1.03132 1.23267 0.99346 1.02248 0.95727 0.89522 0.91661 0.89693 0.93701 0.92086 0.83311 0.91862 0.89455 0.77193 0.91322 0.75599 0.86018 0.90775 0.87207 0.86911 0.88878 0.89417 0.89488 0.89511 0.87976 0.86660 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 6.88 71.98 0.50 -2.14 16 2 C 0.22 4.70 0.65 3.60 0.00 4.70 16 3 C 0.06 1.56 4.52 86.30 0.39 1.95 16 4 N -0.67 -21.60 5.93 -517.92 -3.07 -24.68 16 5 C 0.06 2.38 6.17 85.56 0.53 2.91 16 6 C 0.44 21.43 7.82 87.66 0.69 22.11 16 7 O -0.62 -33.82 15.78 -3.08 -0.05 -33.87 16 8 N -0.57 -30.09 5.29 -306.97 -1.62 -31.71 16 9 C -0.33 -19.05 9.68 84.04 0.81 -18.23 16 10 H 0.08 4.92 7.16 -2.91 -0.02 4.89 16 11 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 12 N -0.92 -50.57 13.05 21.66 0.28 -50.29 16 13 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 14 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 15 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 17 N -0.69 -15.38 4.86 -422.92 -2.06 -17.43 16 18 C 0.55 14.59 7.02 87.66 0.62 15.20 16 19 O -0.57 -18.77 13.07 -3.02 -0.04 -18.81 16 20 C -0.14 -3.13 6.19 -11.54 -0.07 -3.20 16 21 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 22 C -0.10 -2.51 10.23 30.58 0.31 -2.20 16 23 C -0.22 -4.97 5.05 -52.20 -0.26 -5.23 16 24 C -0.11 -1.75 10.53 30.59 0.32 -1.42 16 25 C -0.13 -2.84 10.16 30.59 0.31 -2.53 16 26 C -0.16 -3.40 4.05 -10.79 -0.04 -3.45 16 27 C -0.16 -2.77 9.81 30.59 0.30 -2.47 16 28 C -0.17 -2.60 9.61 30.59 0.29 -2.30 16 29 H 0.09 1.25 6.84 -2.39 -0.02 1.23 16 30 H 0.06 1.22 6.57 -2.39 -0.02 1.21 16 31 H 0.08 1.06 7.01 -2.38 -0.02 1.04 16 32 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 2.02 6.65 -2.39 -0.02 2.01 16 34 H 0.35 11.08 6.47 -89.70 -0.58 10.50 16 35 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.39 19.92 7.90 -92.71 -0.73 19.19 16 38 H 0.28 14.22 8.31 -92.70 -0.77 13.45 16 39 H 0.41 7.40 8.48 -92.71 -0.79 6.61 16 40 H 0.12 2.46 8.14 -2.39 -0.02 2.45 16 41 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 46 H 0.09 2.38 7.18 -2.38 -0.02 2.36 16 47 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.10 1.49 7.42 -2.39 -0.02 1.47 16 49 H 0.12 1.43 5.87 -2.38 -0.01 1.42 16 50 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -71.20 406.29 -0.49 -71.69 By element: Atomic # 1 Polarization: 57.67 SS G_CDS: -1.12 Total: 56.56 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 5.16 Total: 3.40 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -6.47 Total: -124.11 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -0.09 Total: -52.68 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -71.20 -0.49 -71.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753524647.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.591 kcal (2) G-P(sol) polarization free energy of solvation -71.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds