Wall clock time and date at job start Tue Mar 31 2020 18:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47319 * 2 1 4 4 H 1.09001 * 109.46806 * 55.04197 * 3 2 1 5 5 C 1.50694 * 109.46987 * 175.04042 * 3 2 1 6 6 O 1.21290 * 119.99857 * 120.80603 * 5 3 2 7 7 N 1.34780 * 120.00230 * 300.80267 * 5 3 2 8 8 C 1.46499 * 119.99809 * 175.75312 * 7 5 3 9 9 H 1.09004 * 109.47255 * 324.99834 * 8 7 5 10 10 C 1.52997 * 109.46764 * 205.00019 * 8 7 5 11 11 N 1.46494 * 109.47369 * 55.00079 * 10 8 7 12 12 C 1.36940 * 120.00257 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99859 * 0.02562 * 12 11 10 14 14 C 1.38810 * 119.99945 * 179.97438 * 12 11 10 15 15 N 1.31621 * 120.00484 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99775 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46970 * 60.00539 * 16 14 12 18 18 H 1.48504 * 109.47095 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47150 * 300.00178 * 16 14 12 20 20 C 1.52996 * 109.47242 * 84.99682 * 8 7 5 21 21 C 1.52996 * 117.50091 * 8.74955 * 20 8 7 22 22 C 1.52998 * 117.50392 * 300.08726 * 20 8 7 23 23 C 1.50695 * 109.46906 * 295.04256 * 3 2 1 24 24 C 1.41385 * 128.00545 * 119.99978 * 23 3 2 25 25 C 1.50696 * 126.80194 * 359.97438 * 24 23 3 26 26 N 1.30175 * 106.39193 * 179.97438 * 24 23 3 27 27 O 1.20920 * 111.60942 * 0.02562 * 26 24 23 28 28 C 1.34045 * 111.56365 * 359.76438 * 27 26 24 29 29 C 1.50706 * 126.77586 * 180.28861 * 28 27 26 30 30 H 1.08992 * 109.47200 * 296.04731 * 1 2 3 31 31 H 1.08998 * 109.46549 * 56.04520 * 1 2 3 32 32 H 1.09001 * 109.46606 * 176.04168 * 1 2 3 33 33 H 1.08996 * 109.47615 * 239.99407 * 2 1 3 34 34 H 1.09008 * 109.46637 * 119.99477 * 2 1 3 35 35 H 0.96991 * 119.99946 * 355.75283 * 7 5 3 36 36 H 1.09005 * 109.46735 * 174.99730 * 10 8 7 37 37 H 1.09000 * 109.47337 * 294.99573 * 10 8 7 38 38 H 0.97007 * 120.00399 * 0.02562 * 11 10 8 39 39 H 0.96993 * 120.00402 * 179.97438 * 15 14 12 40 40 H 1.09008 * 115.54881 * 154.41419 * 20 8 7 41 41 H 1.09000 * 117.49746 * 359.97438 * 21 20 8 42 42 H 1.09006 * 117.50312 * 145.01550 * 21 20 8 43 43 H 1.08994 * 117.49965 * 214.97710 * 22 20 8 44 44 H 1.08998 * 117.49748 * 359.97438 * 22 20 8 45 45 H 1.08998 * 109.46577 * 90.00538 * 25 24 23 46 46 H 1.09002 * 109.47200 * 209.99949 * 25 24 23 47 47 H 1.08993 * 109.47226 * 329.99986 * 25 24 23 48 48 H 1.08994 * 109.46827 * 270.10948 * 29 28 27 49 49 H 1.09001 * 109.46958 * 30.11203 * 29 28 27 50 50 H 1.09003 * 109.46428 * 150.10555 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6060 1.9813 0.8423 5 6 3.5420 1.4442 0.1228 6 8 4.2206 1.9566 -0.7421 7 7 4.1313 0.8764 1.1938 8 6 5.5921 0.7952 1.2688 9 1 5.9988 0.6335 0.2704 10 6 5.9921 -0.3692 2.1771 11 7 5.3624 -1.6017 1.6970 12 6 5.5776 -2.7824 2.3565 13 1 6.2112 -2.8049 3.2308 14 6 4.9805 -3.9501 1.9019 15 7 4.2079 -3.9228 0.8366 16 14 5.2735 -5.5606 2.8019 17 1 4.7993 -5.4375 4.2039 18 1 4.5285 -6.6504 2.1219 19 1 6.7251 -5.8740 2.7960 20 6 6.1469 2.1016 1.8400 21 6 5.1423 3.1112 2.3988 22 6 5.8510 3.3909 1.0711 23 6 1.6405 2.1165 -1.2872 24 6 0.8348 3.2662 -1.4543 25 6 0.1885 4.0818 -0.3643 26 7 0.7618 3.4806 -2.7362 27 8 1.3857 2.6552 -3.3619 28 6 1.9741 1.7640 -2.5518 29 6 2.8354 0.5988 -2.9662 30 1 -0.3633 0.4512 0.9232 31 1 -0.3632 0.5740 -0.8524 32 1 -0.3632 -1.0253 -0.0709 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.5882 0.5216 1.9148 36 1 7.0758 -0.4854 2.1627 37 1 5.6620 -0.1654 3.1957 38 1 4.7936 -1.5817 0.9115 39 1 3.7910 -4.7388 0.5188 40 1 7.1128 2.0237 2.3392 41 1 4.0861 2.8449 2.3591 42 1 5.4474 3.6979 3.2654 43 1 6.6220 4.1613 1.0648 44 1 5.2614 3.3083 0.1581 45 1 0.8697 4.8726 -0.0499 46 1 -0.7337 4.5249 -0.7402 47 1 -0.0379 3.4380 0.4856 48 1 2.2087 -0.2796 -3.1201 49 1 3.3541 0.8421 -3.8935 50 1 3.5663 0.3914 -2.1846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754454212.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:25 Heat of formation + Delta-G solvation = 50.872706 kcal Electronic energy + Delta-G solvation = -31022.151119 eV Core-core repulsion = 27053.736485 eV Total energy + Delta-G solvation = -3968.414633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.81232 -40.25360 -37.59080 -35.81305 -34.95079 -34.03795 -33.39856 -32.37136 -31.13095 -28.97441 -28.65714 -28.01027 -26.80003 -24.10803 -22.74601 -22.25180 -21.96802 -21.49447 -20.62027 -19.74032 -19.40567 -17.64356 -17.35662 -17.09154 -16.55716 -15.99953 -15.82484 -14.92630 -14.83386 -14.43154 -13.92086 -13.86065 -13.73701 -13.46596 -13.31300 -13.28469 -13.01392 -12.95806 -12.77840 -12.69384 -12.43717 -12.17436 -11.96573 -11.87331 -11.63792 -11.39872 -11.36300 -11.18922 -10.94134 -10.85267 -10.72560 -10.67077 -10.26929 -10.13382 -9.84718 -9.82653 -9.60102 -9.44533 -8.97324 -8.93867 -8.65065 -7.01857 -5.84207 -3.13442 1.60877 2.25251 2.79103 3.20337 3.38876 3.44337 3.44573 3.48424 4.05938 4.19093 4.49080 4.52172 4.69652 4.78287 4.91754 5.00921 5.11733 5.18581 5.19978 5.27223 5.33662 5.36953 5.43776 5.48825 5.54006 5.56346 5.59247 5.64537 5.69060 5.75831 5.81908 5.83540 5.91002 5.96716 6.00578 6.09249 6.11371 6.19436 6.20544 6.20988 6.29821 6.41074 6.45315 6.55629 6.65024 6.89822 7.62973 7.79585 8.33972 8.38067 8.46693 9.46344 10.00921 10.37013 11.37921 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.003986 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.792495 B = 7023.077414 C = 8403.512971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.027 4.027 4 H 0.102 0.898 5 C 0.520 3.480 6 O -0.533 6.533 7 N -0.706 5.706 8 C 0.170 3.830 9 H 0.090 0.910 10 C 0.147 3.853 11 N -0.730 5.730 12 C -0.243 4.243 13 H 0.069 0.931 14 C -0.009 4.009 15 N -0.930 5.930 16 Si 0.906 3.094 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 C -0.160 4.160 21 C -0.177 4.177 22 C -0.189 4.189 23 C -0.180 4.180 24 C 0.026 3.974 25 C -0.075 4.075 26 N -0.374 5.374 27 O 0.089 5.911 28 C 0.007 3.993 29 C -0.078 4.078 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.405 0.595 36 H 0.033 0.967 37 H 0.026 0.974 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.122 0.878 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.080 0.920 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.214 13.636 -0.985 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.049 4.049 4 H 0.120 0.880 5 C 0.306 3.694 6 O -0.411 6.411 7 N -0.356 5.356 8 C 0.066 3.934 9 H 0.108 0.892 10 C 0.019 3.981 11 N -0.375 5.375 12 C -0.374 4.374 13 H 0.087 0.913 14 C -0.205 4.205 15 N -0.578 5.578 16 Si 0.737 3.263 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.213 1.213 20 C -0.180 4.180 21 C -0.214 4.214 22 C -0.225 4.225 23 C -0.185 4.185 24 C -0.133 4.133 25 C -0.133 4.133 26 N -0.082 5.082 27 O 0.026 5.974 28 C -0.056 4.056 29 C -0.136 4.136 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.240 0.760 36 H 0.051 0.949 37 H 0.044 0.956 38 H 0.220 0.780 39 H 0.065 0.935 40 H 0.125 0.875 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.140 0.860 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.099 0.901 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.264 14.760 -2.262 16.193 hybrid contribution 0.104 -1.493 1.306 1.986 sum -6.160 13.267 -0.956 14.659 Atomic orbital electron populations 1.21725 0.95153 1.02038 1.01436 1.21607 0.96534 0.92660 1.04664 1.19610 0.92777 0.97971 0.94496 0.87966 1.20336 0.89688 0.77657 0.81733 1.90594 1.65222 1.44718 1.40546 1.45970 1.07781 1.59876 1.21995 1.20744 0.79105 0.92845 1.00747 0.89239 1.20914 0.96640 0.85490 0.95028 1.42309 1.58100 1.02676 1.34436 1.19154 1.24449 0.85867 1.07964 0.91268 1.24698 1.00017 0.97737 0.98044 1.69632 1.35665 1.27452 1.25083 0.86300 0.77573 0.83594 0.78869 1.21303 1.21702 1.21294 1.22688 1.00042 0.90867 1.04415 1.22856 0.98161 1.03116 0.97301 1.23427 1.03601 0.98260 0.97244 1.20136 1.04719 0.98820 0.94820 1.23303 1.00397 0.96769 0.92833 1.20145 1.00205 0.98615 0.94293 1.73790 1.15631 1.11960 1.06835 1.84760 1.48622 1.29695 1.34285 1.24157 0.97329 0.94819 0.89286 1.20509 0.97623 0.91249 1.04175 0.92790 0.93079 0.92090 0.90581 0.89703 0.75986 0.94892 0.95614 0.78018 0.93456 0.87454 0.89169 0.89667 0.90036 0.86044 0.90333 0.90688 0.90179 0.89633 0.90146 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.79 37.16 0.36 -1.24 16 2 C -0.12 -1.46 5.28 -26.73 -0.14 -1.60 16 3 C -0.03 -0.32 2.47 -92.93 -0.23 -0.55 16 4 H 0.10 1.05 7.34 -51.93 -0.38 0.66 16 5 C 0.52 7.37 5.26 -10.99 -0.06 7.31 16 6 O -0.53 -8.81 10.73 5.55 0.06 -8.75 16 7 N -0.71 -9.92 2.87 -53.81 -0.15 -10.07 16 8 C 0.17 2.64 2.59 -67.93 -0.18 2.46 16 9 H 0.09 1.58 7.64 -51.93 -0.40 1.18 16 10 C 0.15 2.67 5.80 -4.05 -0.02 2.65 16 11 N -0.73 -16.72 5.43 -59.91 -0.33 -17.04 16 12 C -0.24 -6.34 9.99 -15.06 -0.15 -6.49 16 13 H 0.07 1.77 7.83 -52.49 -0.41 1.35 16 14 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 15 N -0.93 -26.14 13.06 55.49 0.72 -25.41 16 16 Si 0.91 21.36 29.55 -169.99 -5.02 16.34 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 20 C -0.16 -2.17 5.70 -90.63 -0.52 -2.69 16 21 C -0.18 -2.19 9.74 -26.70 -0.26 -2.45 16 22 C -0.19 -2.56 9.82 -26.70 -0.26 -2.82 16 23 C -0.18 -2.41 3.46 -104.42 -0.36 -2.77 16 24 C 0.03 0.35 7.33 -82.10 -0.60 -0.26 16 25 C -0.08 -0.72 10.26 36.00 0.37 -0.35 16 26 N -0.37 -5.63 12.07 33.42 0.40 -5.23 16 27 O 0.09 1.32 11.20 17.16 0.19 1.52 16 28 C 0.01 0.10 6.84 -35.30 -0.24 -0.14 16 29 C -0.08 -0.99 8.68 36.01 0.31 -0.67 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.58 7.26 -51.93 -0.38 0.20 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.04 6.35 -51.93 -0.33 0.71 16 34 H 0.08 1.15 7.48 -51.92 -0.39 0.76 16 35 H 0.40 5.48 8.05 -40.82 -0.33 5.16 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.39 9.26 7.33 -40.82 -0.30 8.96 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.11 1.37 8.11 -51.92 -0.42 0.94 16 41 H 0.09 1.10 6.67 -51.93 -0.35 0.76 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.12 1.92 4.83 -51.93 -0.25 1.67 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.08 0.63 7.55 -51.93 -0.39 0.23 16 48 H 0.09 0.95 7.96 -51.93 -0.41 0.53 16 49 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.10 1.48 5.61 -51.93 -0.29 1.19 16 LS Contribution 396.34 15.07 5.97 5.97 Total: -1.00 -29.86 396.34 -8.19 -38.05 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -7.97 Total: 14.56 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -2.07 Total: -9.93 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.65 Total: -57.75 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.25 Total: -7.24 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.86 -8.19 -38.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754454212.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.919 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds