Wall clock time and date at job start Tue Mar 31 2020 18:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47319 * 2 1 4 4 H 1.09001 * 109.46806 * 55.04197 * 3 2 1 5 5 C 1.50694 * 109.46987 * 175.04042 * 3 2 1 6 6 O 1.21290 * 119.99857 * 120.80603 * 5 3 2 7 7 N 1.34780 * 120.00230 * 300.80267 * 5 3 2 8 8 C 1.46499 * 119.99809 * 175.75312 * 7 5 3 9 9 H 1.09004 * 109.47255 * 324.99834 * 8 7 5 10 10 C 1.52997 * 109.46764 * 205.00019 * 8 7 5 11 11 N 1.46494 * 109.47369 * 55.00079 * 10 8 7 12 12 C 1.36940 * 120.00257 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99859 * 0.02562 * 12 11 10 14 14 C 1.38810 * 119.99945 * 179.97438 * 12 11 10 15 15 N 1.31621 * 120.00484 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99775 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46970 * 60.00539 * 16 14 12 18 18 H 1.48504 * 109.47095 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47150 * 300.00178 * 16 14 12 20 20 C 1.52996 * 109.47242 * 84.99682 * 8 7 5 21 21 C 1.52996 * 117.50091 * 8.74955 * 20 8 7 22 22 C 1.52998 * 117.50392 * 300.08726 * 20 8 7 23 23 C 1.50695 * 109.46906 * 295.04256 * 3 2 1 24 24 C 1.41385 * 128.00545 * 119.99978 * 23 3 2 25 25 C 1.50696 * 126.80194 * 359.97438 * 24 23 3 26 26 N 1.30175 * 106.39193 * 179.97438 * 24 23 3 27 27 O 1.20920 * 111.60942 * 0.02562 * 26 24 23 28 28 C 1.34045 * 111.56365 * 359.76438 * 27 26 24 29 29 C 1.50706 * 126.77586 * 180.28861 * 28 27 26 30 30 H 1.08992 * 109.47200 * 296.04731 * 1 2 3 31 31 H 1.08998 * 109.46549 * 56.04520 * 1 2 3 32 32 H 1.09001 * 109.46606 * 176.04168 * 1 2 3 33 33 H 1.08996 * 109.47615 * 239.99407 * 2 1 3 34 34 H 1.09008 * 109.46637 * 119.99477 * 2 1 3 35 35 H 0.96991 * 119.99946 * 355.75283 * 7 5 3 36 36 H 1.09005 * 109.46735 * 174.99730 * 10 8 7 37 37 H 1.09000 * 109.47337 * 294.99573 * 10 8 7 38 38 H 0.97007 * 120.00399 * 0.02562 * 11 10 8 39 39 H 0.96993 * 120.00402 * 179.97438 * 15 14 12 40 40 H 1.09008 * 115.54881 * 154.41419 * 20 8 7 41 41 H 1.09000 * 117.49746 * 359.97438 * 21 20 8 42 42 H 1.09006 * 117.50312 * 145.01550 * 21 20 8 43 43 H 1.08994 * 117.49965 * 214.97710 * 22 20 8 44 44 H 1.08998 * 117.49748 * 359.97438 * 22 20 8 45 45 H 1.08998 * 109.46577 * 90.00538 * 25 24 23 46 46 H 1.09002 * 109.47200 * 209.99949 * 25 24 23 47 47 H 1.08993 * 109.47226 * 329.99986 * 25 24 23 48 48 H 1.08994 * 109.46827 * 270.10948 * 29 28 27 49 49 H 1.09001 * 109.46958 * 30.11203 * 29 28 27 50 50 H 1.09003 * 109.46428 * 150.10555 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6060 1.9813 0.8423 5 6 3.5420 1.4442 0.1228 6 8 4.2206 1.9566 -0.7421 7 7 4.1313 0.8764 1.1938 8 6 5.5921 0.7952 1.2688 9 1 5.9988 0.6335 0.2704 10 6 5.9921 -0.3692 2.1771 11 7 5.3624 -1.6017 1.6970 12 6 5.5776 -2.7824 2.3565 13 1 6.2112 -2.8049 3.2308 14 6 4.9805 -3.9501 1.9019 15 7 4.2079 -3.9228 0.8366 16 14 5.2735 -5.5606 2.8019 17 1 4.7993 -5.4375 4.2039 18 1 4.5285 -6.6504 2.1219 19 1 6.7251 -5.8740 2.7960 20 6 6.1469 2.1016 1.8400 21 6 5.1423 3.1112 2.3988 22 6 5.8510 3.3909 1.0711 23 6 1.6405 2.1165 -1.2872 24 6 0.8348 3.2662 -1.4543 25 6 0.1885 4.0818 -0.3643 26 7 0.7618 3.4806 -2.7362 27 8 1.3857 2.6552 -3.3619 28 6 1.9741 1.7640 -2.5518 29 6 2.8354 0.5988 -2.9662 30 1 -0.3633 0.4512 0.9232 31 1 -0.3632 0.5740 -0.8524 32 1 -0.3632 -1.0253 -0.0709 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.5882 0.5216 1.9148 36 1 7.0758 -0.4854 2.1627 37 1 5.6620 -0.1654 3.1957 38 1 4.7936 -1.5817 0.9115 39 1 3.7910 -4.7388 0.5188 40 1 7.1128 2.0237 2.3392 41 1 4.0861 2.8449 2.3591 42 1 5.4474 3.6979 3.2654 43 1 6.6220 4.1613 1.0648 44 1 5.2614 3.3083 0.1581 45 1 0.8697 4.8726 -0.0499 46 1 -0.7337 4.5249 -0.7402 47 1 -0.0379 3.4380 0.4856 48 1 2.2087 -0.2796 -3.1201 49 1 3.3541 0.8421 -3.8935 50 1 3.5663 0.3914 -2.1846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754454212.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:24 Heat of formation + Delta-G solvation = 34.626517 kcal Electronic energy + Delta-G solvation = -31022.855607 eV Core-core repulsion = 27053.736485 eV Total energy + Delta-G solvation = -3969.119121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.87038 -41.41976 -38.73608 -36.91946 -36.48766 -35.09064 -34.73820 -33.54157 -32.78282 -30.18901 -29.58785 -29.26534 -27.88093 -25.87459 -23.79469 -23.45657 -23.09050 -22.81724 -21.65717 -20.90149 -20.50458 -19.21385 -18.67487 -18.16101 -17.76722 -17.18191 -17.08492 -16.50987 -15.97234 -15.68745 -15.20114 -15.13921 -14.88504 -14.84382 -14.59098 -14.28446 -14.16857 -13.99485 -13.78513 -13.72691 -13.55403 -13.28130 -13.10956 -12.98361 -12.90446 -12.76013 -12.64954 -12.63524 -12.34912 -12.21868 -12.08946 -11.80051 -11.73041 -11.67990 -11.22166 -10.92385 -10.87093 -10.77462 -10.56988 -10.02726 -9.84811 -8.93964 -7.88515 -5.16580 0.52724 1.22986 1.52546 1.53533 1.59294 1.65506 2.13561 2.34793 2.59983 2.99877 3.23627 3.45792 3.51922 3.64453 3.70472 3.79891 3.96388 4.07177 4.12351 4.14975 4.24485 4.30408 4.42523 4.45785 4.50920 4.54498 4.59521 4.62128 4.67485 4.69361 4.75306 4.80276 4.86589 4.90800 4.92756 4.95585 5.08981 5.10290 5.19043 5.20757 5.23608 5.27905 5.30713 5.43147 5.45801 5.56562 5.65478 6.32281 6.64716 7.31239 7.32722 7.41135 8.13533 8.39229 9.33488 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.003986 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.792495 B = 7023.077414 C = 8403.512971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 C -0.016 4.016 4 H 0.131 0.869 5 C 0.520 3.480 6 O -0.557 6.557 7 N -0.701 5.701 8 C 0.183 3.817 9 H 0.062 0.938 10 C 0.150 3.850 11 N -0.739 5.739 12 C -0.245 4.245 13 H 0.074 0.926 14 C -0.063 4.063 15 N -0.959 5.959 16 Si 0.964 3.036 17 H -0.278 1.278 18 H -0.299 1.299 19 H -0.284 1.284 20 C -0.166 4.166 21 C -0.160 4.160 22 C -0.193 4.193 23 C -0.186 4.186 24 C 0.030 3.970 25 C -0.077 4.077 26 N -0.399 5.399 27 O 0.072 5.928 28 C -0.003 4.003 29 C -0.075 4.075 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.409 0.591 36 H 0.032 0.968 37 H 0.039 0.961 38 H 0.377 0.623 39 H 0.250 0.750 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.102 0.898 48 H 0.097 0.903 49 H 0.089 0.911 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.680 14.649 1.082 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C -0.037 4.037 4 H 0.148 0.852 5 C 0.307 3.693 6 O -0.436 6.436 7 N -0.352 5.352 8 C 0.078 3.922 9 H 0.080 0.920 10 C 0.024 3.976 11 N -0.382 5.382 12 C -0.377 4.377 13 H 0.092 0.908 14 C -0.257 4.257 15 N -0.610 5.610 16 Si 0.794 3.206 17 H -0.204 1.204 18 H -0.225 1.225 19 H -0.211 1.211 20 C -0.186 4.186 21 C -0.197 4.197 22 C -0.230 4.230 23 C -0.190 4.190 24 C -0.130 4.130 25 C -0.134 4.134 26 N -0.110 5.110 27 O 0.013 5.987 28 C -0.066 4.066 29 C -0.132 4.132 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.245 0.755 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.210 0.790 39 H 0.058 0.942 40 H 0.137 0.863 41 H 0.110 0.890 42 H 0.124 0.876 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.121 0.879 48 H 0.116 0.884 49 H 0.108 0.892 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.705 15.783 -0.176 17.149 hybrid contribution 0.309 -1.761 0.660 1.906 sum -6.395 14.022 0.484 15.420 Atomic orbital electron populations 1.21673 0.93651 1.02010 1.02363 1.21523 0.97741 0.92494 1.03200 1.19576 0.91177 0.97961 0.95029 0.85173 1.20656 0.90493 0.76995 0.81127 1.90598 1.65984 1.45764 1.41262 1.45881 1.07213 1.59842 1.22235 1.20428 0.79959 0.93087 0.98748 0.91970 1.21003 0.96162 0.84577 0.95907 1.42438 1.58218 1.03524 1.34046 1.19516 1.23414 0.86959 1.07773 0.90803 1.25376 1.00634 1.00571 0.99081 1.69773 1.37004 1.27612 1.26572 0.85366 0.77203 0.80019 0.78025 1.20415 1.22510 1.21065 1.22611 1.01059 0.89783 1.05152 1.22944 0.97918 1.01728 0.97084 1.23338 1.04115 0.98460 0.97096 1.20309 1.04752 0.99052 0.94883 1.23906 0.99490 0.96543 0.93037 1.20347 1.00461 0.98849 0.93755 1.73781 1.16740 1.12616 1.07834 1.84730 1.49184 1.30061 1.34711 1.24430 0.97407 0.94951 0.89841 1.20467 0.97348 0.91528 1.03834 0.90703 0.93381 0.92479 0.92477 0.90764 0.75475 0.94980 0.94355 0.78981 0.94152 0.86322 0.88951 0.87622 0.88821 0.88276 0.89402 0.89809 0.87942 0.88426 0.89180 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.79 71.98 0.70 -2.15 16 2 C -0.11 -2.73 5.28 30.60 0.16 -2.57 16 3 C -0.02 -0.37 2.47 -12.29 -0.03 -0.40 16 4 H 0.13 2.28 7.34 -2.39 -0.02 2.26 16 5 C 0.52 14.55 5.26 87.65 0.46 15.02 16 6 O -0.56 -18.65 10.73 -3.06 -0.03 -18.68 16 7 N -0.70 -19.26 2.87 -442.53 -1.27 -20.53 16 8 C 0.18 5.58 2.59 44.99 0.12 5.70 16 9 H 0.06 2.25 7.64 -2.39 -0.02 2.24 16 10 C 0.15 5.33 5.80 86.38 0.50 5.83 16 11 N -0.74 -33.75 5.43 -343.46 -1.87 -35.61 16 12 C -0.24 -12.63 9.99 84.03 0.84 -11.79 16 13 H 0.07 3.68 7.83 -2.91 -0.02 3.65 16 14 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 15 N -0.96 -54.52 13.06 21.65 0.28 -54.24 16 16 Si 0.96 43.74 29.55 68.60 2.03 45.77 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 C -0.17 -4.23 5.70 -10.80 -0.06 -4.29 16 21 C -0.16 -3.50 9.74 30.62 0.30 -3.20 16 22 C -0.19 -4.95 9.82 30.62 0.30 -4.65 16 23 C -0.19 -4.82 3.46 -19.74 -0.07 -4.89 16 24 C 0.03 0.75 7.33 43.58 0.32 1.06 16 25 C -0.08 -1.27 10.26 71.23 0.73 -0.54 16 26 N -0.40 -11.87 12.07 -49.54 -0.60 -12.47 16 27 O 0.07 2.18 11.20 71.59 0.80 2.99 16 28 C 0.00 -0.09 6.84 25.04 0.17 0.09 16 29 C -0.07 -1.94 8.68 71.24 0.62 -1.32 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.02 7.26 -2.39 -0.02 1.00 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.60 6.35 -2.39 -0.02 1.59 16 34 H 0.07 1.98 7.48 -2.38 -0.02 1.96 16 35 H 0.41 10.61 8.05 -92.72 -0.75 9.86 16 36 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.38 18.40 7.33 -92.70 -0.68 17.72 16 39 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 40 H 0.12 2.76 8.11 -2.38 -0.02 2.74 16 41 H 0.09 1.99 6.67 -2.39 -0.02 1.98 16 42 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.10 3.08 4.83 -2.39 -0.01 3.07 16 45 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.10 1.22 7.55 -2.39 -0.02 1.20 16 48 H 0.10 2.24 7.96 -2.39 -0.02 2.23 16 49 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 50 H 0.08 2.50 5.61 -2.39 -0.01 2.48 16 Total: -1.00 -64.05 396.34 4.42 -59.64 By element: Atomic # 1 Polarization: 44.63 SS G_CDS: -0.46 Total: 44.18 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 5.53 Total: -11.04 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -3.45 Total: -122.84 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: 0.77 Total: -15.70 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -64.05 4.42 -59.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754454212.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.263 kcal (2) G-P(sol) polarization free energy of solvation -64.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds