Wall clock time and date at job start Tue Mar 31 2020 19:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35910 * 117.00332 * 2 1 4 4 C 1.39140 * 120.47174 * 0.24405 * 3 2 1 5 5 C 1.38538 * 118.37384 * 180.26630 * 4 3 2 6 6 C 1.38261 * 119.22087 * 359.75579 * 5 4 3 7 7 N 1.31843 * 120.88354 * 359.97438 * 6 5 4 8 8 C 1.31835 * 121.78425 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.65737 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47339 * 90.00048 * 9 8 7 11 11 O 1.21290 * 119.99641 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00351 * 179.72335 * 10 9 8 13 13 C 1.46498 * 120.00297 * 180.27210 * 12 10 9 14 14 C 1.52997 * 109.47096 * 89.99905 * 13 12 10 15 15 N 1.46502 * 109.47463 * 179.97438 * 14 13 12 16 16 C 1.46497 * 119.99918 * 89.99796 * 15 14 13 17 17 C 1.36934 * 120.00016 * 270.00426 * 15 14 13 18 18 H 1.08002 * 120.00034 * 23.04528 * 17 15 14 19 19 C 1.38809 * 120.00052 * 203.04161 * 17 15 14 20 20 N 1.31627 * 120.00151 * 12.92722 * 19 17 15 21 21 Si 1.86804 * 120.00342 * 192.92227 * 19 17 15 22 22 H 1.48507 * 109.46592 * 60.00392 * 21 19 17 23 23 H 1.48501 * 109.47171 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47108 * 300.00607 * 21 19 17 25 25 C 1.46498 * 119.99633 * 0.27540 * 12 10 9 26 26 C 1.53003 * 109.47102 * 119.99975 * 25 12 10 27 27 C 1.52999 * 109.46833 * 239.99703 * 25 12 10 28 28 H 1.08997 * 109.46669 * 60.00438 * 1 2 3 29 29 H 1.08994 * 109.47160 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.46922 * 300.00591 * 1 2 3 31 31 H 1.08001 * 120.81467 * 0.02607 * 4 3 2 32 32 H 1.08004 * 120.39170 * 179.73683 * 5 4 3 33 33 H 1.07996 * 119.55191 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47149 * 330.00038 * 9 8 7 35 35 H 1.09004 * 109.47029 * 209.99820 * 9 8 7 36 36 H 1.08997 * 109.47459 * 210.00067 * 13 12 10 37 37 H 1.09001 * 109.47320 * 330.00424 * 13 12 10 38 38 H 1.09000 * 109.47603 * 300.00401 * 14 13 12 39 39 H 1.09005 * 109.47097 * 60.00104 * 14 13 12 40 40 H 1.09007 * 109.46850 * 95.12491 * 16 15 14 41 41 H 1.09001 * 109.47472 * 215.12511 * 16 15 14 42 42 H 1.08999 * 109.47261 * 335.13018 * 16 15 14 43 43 H 0.96995 * 120.00175 * 179.97438 * 20 19 17 44 44 H 1.08992 * 109.47208 * 359.97438 * 25 12 10 45 45 H 1.09005 * 109.47145 * 60.00030 * 26 25 12 46 46 H 1.09006 * 109.46971 * 180.02562 * 26 25 12 47 47 H 1.08993 * 109.46937 * 299.99567 * 26 25 12 48 48 H 1.09002 * 109.47278 * 60.00687 * 27 25 12 49 49 H 1.09006 * 109.46893 * 179.97438 * 27 25 12 50 50 H 1.08996 * 109.47598 * 300.00217 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2980 2.3841 0.0051 5 6 1.9717 3.5946 -0.0008 6 6 3.3543 3.5975 -0.0063 7 7 4.0334 2.4674 -0.0055 8 6 3.4306 1.2950 0.0000 9 6 4.2543 0.0330 0.0000 10 6 4.5345 -0.3840 1.4208 11 8 4.1078 0.2788 2.3426 12 7 5.2550 -1.4960 1.6672 13 6 5.5224 -1.9046 3.0484 14 6 4.4046 -2.8308 3.5317 15 7 4.6722 -3.2399 4.9128 16 6 4.1569 -2.4400 6.0266 17 6 5.4042 -4.3699 5.1624 18 1 6.0843 -4.7492 4.4140 19 6 5.2721 -5.0280 6.3775 20 7 4.2755 -4.7284 7.1834 21 14 6.5087 -6.3391 6.8689 22 1 7.8664 -5.7405 6.9308 23 1 6.1471 -6.8860 8.2013 24 1 6.4954 -7.4332 5.8650 25 6 5.7708 -2.2962 0.5537 26 6 7.2977 -2.3555 0.6327 27 6 5.2004 -3.7134 0.6370 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2184 2.3519 0.0096 32 1 1.4234 4.5251 -0.0013 33 1 3.8850 4.5381 -0.0105 34 1 5.1961 0.2138 -0.5180 35 1 3.7055 -0.7591 -0.5095 36 1 6.4756 -2.4313 3.0935 37 1 5.5644 -1.0221 3.6867 38 1 3.4513 -2.3041 3.4867 39 1 4.3625 -3.7134 2.8934 40 1 3.2077 -2.8563 6.3643 41 1 4.8734 -2.4563 6.8478 42 1 4.0059 -1.4122 5.6965 43 1 4.1830 -5.1885 8.0322 44 1 5.4730 -1.8398 -0.3902 45 1 7.5952 -2.8122 1.5767 46 1 7.6815 -2.9505 -0.1961 47 1 7.7040 -1.3459 0.5733 48 1 4.1126 -3.6711 0.5806 49 1 5.5838 -4.3086 -0.1918 50 1 5.4978 -4.1700 1.5809 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755812159.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:37 Heat of formation + Delta-G solvation = -7.181253 kcal Electronic energy + Delta-G solvation = -30154.061580 eV Core-core repulsion = 26183.129538 eV Total energy + Delta-G solvation = -3970.932042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.98026 -39.61358 -38.26007 -36.60592 -35.31296 -33.29126 -31.94789 -31.57060 -30.92761 -29.14408 -27.72496 -27.39512 -26.98687 -25.72148 -23.67497 -23.03664 -22.46243 -21.58921 -20.39995 -18.60731 -18.17297 -17.33667 -17.28575 -16.55953 -16.36647 -15.95834 -15.47404 -15.06108 -14.67254 -14.52149 -14.12432 -14.04533 -13.89528 -13.56780 -13.40971 -13.30418 -13.07011 -12.96939 -12.60307 -12.46375 -12.10279 -11.99704 -11.92007 -11.75167 -11.64504 -11.55880 -11.34095 -11.01508 -10.83461 -10.76702 -10.66967 -10.44359 -10.08053 -9.94237 -9.83370 -9.71135 -9.60907 -9.40860 -8.59790 -8.45680 -8.27113 -6.63156 -5.64474 -3.11923 0.95328 1.13697 2.96963 3.00566 3.23889 3.41751 3.47281 3.48119 3.69808 4.14763 4.43501 4.53433 4.56117 4.77151 4.77800 4.88036 4.91713 4.95803 5.08493 5.16849 5.22853 5.27440 5.29316 5.36328 5.49700 5.60504 5.70523 5.72615 5.82065 5.85131 5.90355 5.91879 5.93948 5.99456 6.20475 6.26930 6.34073 6.39853 6.50219 6.70841 6.86790 6.98647 7.01596 7.12371 7.49494 7.78713 7.81961 7.87451 7.87573 8.46569 8.56100 9.31121 9.95384 10.46061 11.39835 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.002999 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.653702 B = 9335.572625 C = 9977.349934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.304 6.304 3 C 0.094 3.906 4 C -0.166 4.166 5 C -0.136 4.136 6 C 0.062 3.938 7 N -0.439 5.439 8 C 0.130 3.870 9 C -0.086 4.086 10 C 0.521 3.479 11 O -0.534 6.534 12 N -0.602 5.602 13 C 0.094 3.906 14 C 0.139 3.861 15 N -0.600 5.600 16 C 0.163 3.837 17 C -0.255 4.255 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.907 5.907 21 Si 0.903 3.097 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.130 3.870 26 C -0.165 4.165 27 C -0.168 4.168 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.157 0.843 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.053 0.947 40 H 0.029 0.971 41 H 0.039 0.961 42 H 0.000 1.000 43 H 0.252 0.748 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.448 12.178 -20.953 24.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.046 3.954 4 C -0.192 4.192 5 C -0.156 4.156 6 C -0.095 4.095 7 N -0.148 5.148 8 C -0.011 4.011 9 C -0.126 4.126 10 C 0.308 3.692 11 O -0.410 6.410 12 N -0.336 5.336 13 C -0.030 4.030 14 C 0.011 3.989 15 N -0.323 5.323 16 C 0.018 3.982 17 C -0.385 4.385 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.552 5.552 21 Si 0.733 3.267 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.026 3.974 26 C -0.223 4.223 27 C -0.226 4.226 28 H 0.073 0.927 29 H 0.122 0.878 30 H 0.076 0.924 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.175 0.825 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.019 0.981 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.756 12.279 -20.249 23.977 hybrid contribution -0.579 -0.577 0.437 0.927 sum -4.335 11.702 -19.812 23.414 Atomic orbital electron populations 1.23116 0.78112 1.04493 1.01202 1.86123 1.21557 1.25805 1.88116 1.19843 0.93086 0.85264 0.97229 1.21651 1.00700 0.92143 1.04731 1.21952 0.95761 0.98149 0.99698 1.22572 0.91430 0.96264 0.99271 1.67434 1.40029 0.97506 1.09858 1.19967 0.87773 0.93404 0.99931 1.20504 1.01199 0.94297 0.96645 1.20167 0.78268 0.80418 0.90360 1.90711 1.50723 1.53336 1.46219 1.48133 1.52985 1.24725 1.07719 1.22424 1.01007 1.00010 0.79541 1.21179 0.94581 0.95906 0.87231 1.43834 1.62549 1.26632 0.99261 1.20784 0.98670 0.89192 0.89541 1.19118 1.16099 1.02181 1.01062 0.91589 1.25023 0.97466 0.98418 0.98745 1.70076 1.29494 1.44057 1.11532 0.86362 0.81141 0.81596 0.77573 1.21117 1.21688 1.20988 1.21158 0.94176 0.92528 0.89574 1.22180 0.94909 1.02216 1.02979 1.22325 1.01463 0.95553 1.03294 0.92728 0.87764 0.92440 0.84361 0.84610 0.82530 0.87366 0.87161 0.90792 0.90878 0.94675 0.92917 0.95236 0.94237 0.98143 0.93776 0.89626 0.91468 0.91620 0.92422 0.92137 0.91917 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.83 101.05 0.99 1.20 16 2 O -0.30 -3.75 9.54 -19.46 -0.19 -3.94 16 3 C 0.09 1.22 6.67 -39.07 -0.26 0.96 16 4 C -0.17 -1.74 9.14 -39.14 -0.36 -2.10 16 5 C -0.14 -1.30 10.11 -39.46 -0.40 -1.70 16 6 C 0.06 0.69 11.18 -17.54 -0.20 0.49 16 7 N -0.44 -6.19 10.27 -9.35 -0.10 -6.29 16 8 C 0.13 1.84 5.29 -82.42 -0.44 1.40 16 9 C -0.09 -1.12 4.09 -29.04 -0.12 -1.24 16 10 C 0.52 8.83 7.67 -10.99 -0.08 8.75 16 11 O -0.53 -11.42 15.61 5.55 0.09 -11.33 16 12 N -0.60 -9.54 2.40 -166.11 -0.40 -9.94 16 13 C 0.09 1.83 5.15 -4.04 -0.02 1.81 16 14 C 0.14 3.08 5.69 -4.04 -0.02 3.06 16 15 N -0.60 -15.86 2.92 -181.12 -0.53 -16.39 16 16 C 0.16 4.36 8.98 59.85 0.54 4.89 16 17 C -0.25 -7.11 9.65 -15.06 -0.15 -7.26 16 18 H 0.07 1.76 7.86 -52.49 -0.41 1.35 16 19 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 20 N -0.91 -27.21 10.71 55.49 0.59 -26.62 16 21 Si 0.90 22.10 29.57 -169.99 -5.03 17.07 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.13 1.55 3.17 -67.93 -0.22 1.33 16 26 C -0.16 -1.81 9.17 37.16 0.34 -1.47 16 27 C -0.17 -2.05 8.14 37.16 0.30 -1.75 16 28 H 0.05 0.32 7.71 -51.93 -0.40 -0.08 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.45 7.69 -51.93 -0.40 0.05 16 31 H 0.14 1.06 6.45 -52.49 -0.34 0.72 16 32 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.11 1.19 7.79 -51.93 -0.40 0.78 16 35 H 0.11 1.23 7.16 -51.93 -0.37 0.85 16 36 H 0.07 1.41 6.43 -51.93 -0.33 1.07 16 37 H 0.07 1.60 7.42 -51.93 -0.39 1.22 16 38 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 39 H 0.05 1.12 5.34 -51.93 -0.28 0.84 16 40 H 0.03 0.84 7.34 -51.93 -0.38 0.46 16 41 H 0.04 1.10 7.34 -51.93 -0.38 0.72 16 42 H 0.00 0.00 8.03 -51.93 -0.42 -0.42 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.09 0.82 5.76 -51.93 -0.30 0.52 16 45 H 0.07 0.85 6.66 -51.93 -0.35 0.51 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.08 1.13 6.17 -51.93 -0.32 0.80 16 LS Contribution 399.74 15.07 6.02 6.02 Total: -1.00 -35.79 399.74 -7.68 -43.48 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.98 Total: -0.42 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -0.17 Total: 8.35 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.43 Total: -59.23 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.10 Total: -15.27 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.79 -7.68 -43.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755812159.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.294 kcal (2) G-P(sol) polarization free energy of solvation -35.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds