Wall clock time and date at job start Tue Mar 31 2020 19:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35910 * 117.00332 * 2 1 4 4 C 1.39140 * 120.47174 * 0.24405 * 3 2 1 5 5 C 1.38538 * 118.37384 * 180.26630 * 4 3 2 6 6 C 1.38261 * 119.22087 * 359.75579 * 5 4 3 7 7 N 1.31843 * 120.88354 * 359.97438 * 6 5 4 8 8 C 1.31835 * 121.78425 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.65737 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47339 * 90.00048 * 9 8 7 11 11 O 1.21290 * 119.99641 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00351 * 179.72335 * 10 9 8 13 13 C 1.46498 * 120.00297 * 180.27210 * 12 10 9 14 14 C 1.52997 * 109.47096 * 89.99905 * 13 12 10 15 15 N 1.46502 * 109.47463 * 179.97438 * 14 13 12 16 16 C 1.46497 * 119.99918 * 89.99796 * 15 14 13 17 17 C 1.36934 * 120.00016 * 270.00426 * 15 14 13 18 18 H 1.08002 * 120.00034 * 23.04528 * 17 15 14 19 19 C 1.38809 * 120.00052 * 203.04161 * 17 15 14 20 20 N 1.31627 * 120.00151 * 12.92722 * 19 17 15 21 21 Si 1.86804 * 120.00342 * 192.92227 * 19 17 15 22 22 H 1.48507 * 109.46592 * 60.00392 * 21 19 17 23 23 H 1.48501 * 109.47171 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47108 * 300.00607 * 21 19 17 25 25 C 1.46498 * 119.99633 * 0.27540 * 12 10 9 26 26 C 1.53003 * 109.47102 * 119.99975 * 25 12 10 27 27 C 1.52999 * 109.46833 * 239.99703 * 25 12 10 28 28 H 1.08997 * 109.46669 * 60.00438 * 1 2 3 29 29 H 1.08994 * 109.47160 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.46922 * 300.00591 * 1 2 3 31 31 H 1.08001 * 120.81467 * 0.02607 * 4 3 2 32 32 H 1.08004 * 120.39170 * 179.73683 * 5 4 3 33 33 H 1.07996 * 119.55191 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47149 * 330.00038 * 9 8 7 35 35 H 1.09004 * 109.47029 * 209.99820 * 9 8 7 36 36 H 1.08997 * 109.47459 * 210.00067 * 13 12 10 37 37 H 1.09001 * 109.47320 * 330.00424 * 13 12 10 38 38 H 1.09000 * 109.47603 * 300.00401 * 14 13 12 39 39 H 1.09005 * 109.47097 * 60.00104 * 14 13 12 40 40 H 1.09007 * 109.46850 * 95.12491 * 16 15 14 41 41 H 1.09001 * 109.47472 * 215.12511 * 16 15 14 42 42 H 1.08999 * 109.47261 * 335.13018 * 16 15 14 43 43 H 0.96995 * 120.00175 * 179.97438 * 20 19 17 44 44 H 1.08992 * 109.47208 * 359.97438 * 25 12 10 45 45 H 1.09005 * 109.47145 * 60.00030 * 26 25 12 46 46 H 1.09006 * 109.46971 * 180.02562 * 26 25 12 47 47 H 1.08993 * 109.46937 * 299.99567 * 26 25 12 48 48 H 1.09002 * 109.47278 * 60.00687 * 27 25 12 49 49 H 1.09006 * 109.46893 * 179.97438 * 27 25 12 50 50 H 1.08996 * 109.47598 * 300.00217 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2980 2.3841 0.0051 5 6 1.9717 3.5946 -0.0008 6 6 3.3543 3.5975 -0.0063 7 7 4.0334 2.4674 -0.0055 8 6 3.4306 1.2950 0.0000 9 6 4.2543 0.0330 0.0000 10 6 4.5345 -0.3840 1.4208 11 8 4.1078 0.2788 2.3426 12 7 5.2550 -1.4960 1.6672 13 6 5.5224 -1.9046 3.0484 14 6 4.4046 -2.8308 3.5317 15 7 4.6722 -3.2399 4.9128 16 6 4.1569 -2.4400 6.0266 17 6 5.4042 -4.3699 5.1624 18 1 6.0843 -4.7492 4.4140 19 6 5.2721 -5.0280 6.3775 20 7 4.2755 -4.7284 7.1834 21 14 6.5087 -6.3391 6.8689 22 1 7.8664 -5.7405 6.9308 23 1 6.1471 -6.8860 8.2013 24 1 6.4954 -7.4332 5.8650 25 6 5.7708 -2.2962 0.5537 26 6 7.2977 -2.3555 0.6327 27 6 5.2004 -3.7134 0.6370 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2184 2.3519 0.0096 32 1 1.4234 4.5251 -0.0013 33 1 3.8850 4.5381 -0.0105 34 1 5.1961 0.2138 -0.5180 35 1 3.7055 -0.7591 -0.5095 36 1 6.4756 -2.4313 3.0935 37 1 5.5644 -1.0221 3.6867 38 1 3.4513 -2.3041 3.4867 39 1 4.3625 -3.7134 2.8934 40 1 3.2077 -2.8563 6.3643 41 1 4.8734 -2.4563 6.8478 42 1 4.0059 -1.4122 5.6965 43 1 4.1830 -5.1885 8.0322 44 1 5.4730 -1.8398 -0.3902 45 1 7.5952 -2.8122 1.5767 46 1 7.6815 -2.9505 -0.1961 47 1 7.7040 -1.3459 0.5733 48 1 4.1126 -3.6711 0.5806 49 1 5.5838 -4.3086 -0.1918 50 1 5.4978 -4.1700 1.5809 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755812159.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:37 Heat of formation + Delta-G solvation = -30.344987 kcal Electronic energy + Delta-G solvation = -30155.066035 eV Core-core repulsion = 26183.129538 eV Total energy + Delta-G solvation = -3971.936497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.89020 -40.85243 -39.08269 -38.08318 -37.13719 -34.29893 -33.62853 -32.50480 -32.41090 -30.51836 -28.81946 -28.30579 -27.99183 -27.89959 -25.34351 -23.84120 -23.60915 -22.68175 -22.30321 -19.79214 -19.02812 -18.81896 -18.36548 -18.15001 -17.41392 -17.00878 -16.76801 -16.38090 -16.26997 -15.56274 -15.37934 -15.29645 -14.92761 -14.86271 -14.77340 -14.59005 -14.24609 -14.17674 -14.03000 -13.83085 -13.29048 -13.20102 -13.16131 -12.91868 -12.79517 -12.74864 -12.66075 -12.49051 -12.35479 -12.31791 -12.15676 -12.09990 -11.94391 -11.75875 -11.41109 -10.95014 -10.68612 -10.58311 -10.56185 -9.77162 -9.32177 -8.76146 -7.82082 -5.33756 0.10946 0.30804 1.46771 1.50686 1.56923 1.67988 2.00500 2.25364 2.52491 2.80094 3.28618 3.31401 3.63311 3.64931 3.74951 3.82924 3.95822 4.08029 4.17557 4.19971 4.25488 4.33135 4.35286 4.37596 4.45676 4.46675 4.58414 4.64123 4.68729 4.72312 4.75916 4.82571 4.84710 4.93673 5.03523 5.05484 5.07801 5.11861 5.12728 5.24957 5.42681 5.48786 5.51668 5.56990 5.63085 5.66275 6.23350 6.30904 6.52073 7.01381 7.11773 7.24382 7.82249 8.31004 9.21803 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.002999 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.653702 B = 9335.572625 C = 9977.349934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.077 3.923 4 C -0.170 4.170 5 C -0.127 4.127 6 C 0.046 3.954 7 N -0.468 5.468 8 C 0.095 3.905 9 C -0.074 4.074 10 C 0.516 3.484 11 O -0.586 6.586 12 N -0.599 5.599 13 C 0.116 3.884 14 C 0.147 3.853 15 N -0.616 5.616 16 C 0.182 3.818 17 C -0.264 4.264 18 H 0.078 0.922 19 C -0.055 4.055 20 N -0.942 5.942 21 Si 0.974 3.026 22 H -0.277 1.277 23 H -0.296 1.296 24 H -0.270 1.270 25 C 0.124 3.876 26 C -0.161 4.161 27 C -0.165 4.165 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.056 0.944 31 H 0.166 0.834 32 H 0.174 0.826 33 H 0.182 0.818 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.016 0.984 39 H 0.064 0.936 40 H 0.005 0.995 41 H 0.019 0.981 42 H 0.011 0.989 43 H 0.248 0.752 44 H 0.119 0.881 45 H 0.045 0.955 46 H 0.096 0.904 47 H 0.058 0.942 48 H 0.053 0.947 49 H 0.095 0.905 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.065 12.279 -23.739 27.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.239 6.239 3 C 0.028 3.972 4 C -0.196 4.196 5 C -0.146 4.146 6 C -0.111 4.111 7 N -0.178 5.178 8 C -0.045 4.045 9 C -0.114 4.114 10 C 0.305 3.695 11 O -0.466 6.466 12 N -0.332 5.332 13 C -0.010 4.010 14 C 0.020 3.980 15 N -0.340 5.340 16 C 0.036 3.964 17 C -0.394 4.394 18 H 0.096 0.904 19 C -0.250 4.250 20 N -0.589 5.589 21 Si 0.802 3.198 22 H -0.203 1.203 23 H -0.223 1.223 24 H -0.195 1.195 25 C 0.022 3.978 26 C -0.219 4.219 27 C -0.223 4.223 28 H 0.097 0.903 29 H 0.133 0.867 30 H 0.075 0.925 31 H 0.183 0.817 32 H 0.191 0.809 33 H 0.199 0.801 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.035 0.965 39 H 0.082 0.918 40 H 0.023 0.977 41 H 0.038 0.962 42 H 0.030 0.970 43 H 0.057 0.943 44 H 0.137 0.863 45 H 0.064 0.936 46 H 0.114 0.886 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.114 0.886 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.352 12.362 -23.112 26.424 hybrid contribution -0.788 -0.524 1.235 1.556 sum -4.140 11.838 -21.877 25.217 Atomic orbital electron populations 1.23376 0.76290 1.05707 1.02334 1.86072 1.23567 1.25994 1.88223 1.20039 0.93196 0.86255 0.97665 1.22069 1.02136 0.91699 1.03731 1.22385 0.95370 0.99393 0.97469 1.23140 0.92650 0.96450 0.98871 1.67395 1.41225 0.98302 1.10839 1.20129 0.88692 0.93717 1.01927 1.20475 1.02490 0.94839 0.93617 1.20951 0.77083 0.79780 0.91679 1.90677 1.52763 1.55036 1.48161 1.48201 1.52770 1.25028 1.07178 1.21812 0.99819 0.97847 0.81499 1.21223 0.94685 0.96540 0.85505 1.44069 1.62671 1.26618 1.00613 1.20463 0.96819 0.89701 0.89390 1.19527 1.16149 1.02224 1.01460 0.90380 1.25900 0.99314 1.00975 0.98829 1.70260 1.31373 1.45524 1.11742 0.85242 0.78662 0.79012 0.76934 1.20341 1.22276 1.19505 1.21532 0.94894 0.92095 0.89282 1.22159 0.93916 1.02694 1.03088 1.22286 1.01161 0.95808 1.03005 0.90275 0.86653 0.92521 0.81673 0.80875 0.80107 0.85285 0.85277 0.90294 0.93938 0.96509 0.91833 0.97671 0.96216 0.96996 0.94279 0.86288 0.93588 0.88570 0.92313 0.92799 0.88639 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.83 113.37 1.11 1.37 16 2 O -0.33 -7.83 9.54 -92.54 -0.88 -8.71 16 3 C 0.08 1.93 6.67 22.60 0.15 2.08 16 4 C -0.17 -3.25 9.14 22.56 0.21 -3.05 16 5 C -0.13 -2.13 10.11 22.35 0.23 -1.90 16 6 C 0.05 0.96 11.18 84.70 0.95 1.91 16 7 N -0.47 -12.96 10.27 -183.50 -1.88 -14.85 16 8 C 0.09 2.64 5.29 42.67 0.23 2.87 16 9 C -0.07 -1.86 4.09 29.10 0.12 -1.74 16 10 C 0.52 17.63 7.67 87.66 0.67 18.30 16 11 O -0.59 -26.07 15.61 -3.06 -0.05 -26.12 16 12 N -0.60 -18.88 2.40 -797.85 -1.91 -20.80 16 13 C 0.12 4.59 5.15 86.38 0.44 5.04 16 14 C 0.15 6.71 5.69 86.38 0.49 7.20 16 15 N -0.62 -33.49 2.92 -726.93 -2.12 -35.61 16 16 C 0.18 10.15 8.98 127.77 1.15 11.30 16 17 C -0.26 -14.86 9.65 84.03 0.81 -14.05 16 18 H 0.08 4.13 7.86 -2.91 -0.02 4.10 16 19 C -0.06 -3.19 5.10 84.86 0.43 -2.76 16 20 N -0.94 -58.02 10.71 21.65 0.23 -57.79 16 21 Si 0.97 45.62 29.57 68.60 2.03 47.65 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 25 C 0.12 2.71 3.17 44.99 0.14 2.85 16 26 C -0.16 -3.16 9.17 71.98 0.66 -2.50 16 27 C -0.16 -3.69 8.14 71.98 0.59 -3.10 16 28 H 0.08 0.76 7.71 -2.39 -0.02 0.74 16 29 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 0.83 7.69 -2.39 -0.02 0.82 16 31 H 0.17 2.08 6.45 -2.91 -0.02 2.06 16 32 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.13 2.60 7.79 -2.39 -0.02 2.58 16 35 H 0.13 2.66 7.16 -2.38 -0.02 2.64 16 36 H 0.08 3.05 6.43 -2.39 -0.02 3.03 16 37 H 0.04 1.94 7.42 -2.39 -0.02 1.93 16 38 H 0.02 0.81 8.07 -2.39 -0.02 0.79 16 39 H 0.06 2.74 5.34 -2.38 -0.01 2.73 16 40 H 0.01 0.30 7.34 -2.38 -0.02 0.29 16 41 H 0.02 1.13 7.34 -2.39 -0.02 1.12 16 42 H 0.01 0.61 8.03 -2.39 -0.02 0.59 16 43 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 44 H 0.12 1.87 5.76 -2.39 -0.01 1.85 16 45 H 0.05 1.11 6.66 -2.38 -0.02 1.09 16 46 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 47 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 50 H 0.05 1.32 6.17 -2.39 -0.01 1.31 16 Total: -1.00 -81.27 399.74 4.71 -76.56 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.93 Total: 15.86 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: 8.38 Total: 23.81 kcal Atomic # 7 Polarization: -123.35 SS G_CDS: -5.69 Total: -129.04 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.93 Total: -34.83 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -81.27 4.71 -76.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755812159.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.210 kcal (2) G-P(sol) polarization free energy of solvation -81.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds