Wall clock time and date at job start Tue Mar 31 2020 19:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00281 * 2 1 4 4 C 1.50699 * 109.47144 * 180.02562 * 3 2 1 5 5 C 1.38352 * 120.34659 * 270.04110 * 4 3 2 6 6 N 1.31928 * 121.08056 * 179.97438 * 5 4 3 7 7 C 1.31694 * 121.87520 * 359.97438 * 6 5 4 8 8 C 1.39519 * 120.57329 * 359.97438 * 7 6 5 9 9 C 1.47833 * 120.56248 * 180.02562 * 8 7 6 10 10 O 1.21556 * 119.99991 * 145.60251 * 9 8 7 11 11 N 1.34778 * 120.00137 * 325.60875 * 9 8 7 12 12 C 1.46499 * 119.99818 * 214.21091 * 11 9 8 13 13 C 1.53002 * 109.47235 * 90.00004 * 12 11 9 14 14 N 1.46499 * 109.47235 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99944 * 269.99771 * 14 13 12 16 16 C 1.36944 * 120.00063 * 89.99522 * 14 13 12 17 17 H 1.07997 * 119.99704 * 24.74288 * 16 14 13 18 18 C 1.38806 * 119.99846 * 204.73816 * 16 14 13 19 19 N 1.31619 * 120.00364 * 6.41422 * 18 16 14 20 20 Si 1.86805 * 120.00024 * 186.41313 * 18 16 14 21 21 H 1.48501 * 109.46875 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47080 * 120.00101 * 20 18 16 23 23 H 1.48493 * 109.47164 * 240.00410 * 20 18 16 24 24 C 1.46500 * 120.00130 * 34.20867 * 11 9 8 25 25 C 1.53001 * 109.46872 * 291.68472 * 24 11 9 26 26 C 1.53001 * 109.46807 * 51.68451 * 24 11 9 27 27 C 1.38355 * 120.34809 * 90.00008 * 4 3 2 28 28 H 1.09004 * 109.47143 * 60.00209 * 1 2 3 29 29 H 1.08998 * 109.47512 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47318 * 300.00523 * 1 2 3 31 31 H 1.08990 * 109.47283 * 59.99579 * 3 2 1 32 32 H 1.09009 * 109.46673 * 300.00088 * 3 2 1 33 33 H 1.07999 * 119.46084 * 359.97438 * 5 4 3 34 34 H 1.08004 * 119.71050 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.47209 * 210.00044 * 12 11 9 36 36 H 1.08998 * 109.47252 * 329.99588 * 12 11 9 37 37 H 1.09004 * 109.46610 * 299.99840 * 13 12 11 38 38 H 1.08998 * 109.47341 * 59.99637 * 13 12 11 39 39 H 1.09002 * 109.46825 * 95.02911 * 15 14 13 40 40 H 1.09000 * 109.47252 * 215.02601 * 15 14 13 41 41 H 1.08994 * 109.47202 * 335.03206 * 15 14 13 42 42 H 0.97006 * 120.00257 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.47174 * 171.68794 * 24 11 9 44 44 H 1.09001 * 109.46992 * 12.00009 * 25 24 11 45 45 H 1.09009 * 109.46820 * 131.99629 * 25 24 11 46 46 H 1.08992 * 109.47081 * 251.99351 * 25 24 11 47 47 H 1.08997 * 109.46665 * 90.66007 * 26 24 11 48 48 H 1.08999 * 109.46997 * 210.65594 * 26 24 11 49 49 H 1.08996 * 109.47424 * 330.65992 * 26 24 11 50 50 H 1.08002 * 120.86061 * 0.03672 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2098 1.1301 1.1930 6 7 5.5248 1.0253 1.2094 7 6 6.2318 0.9693 0.0997 8 6 5.6038 1.0190 -1.1451 9 6 6.3976 0.9554 -2.3906 10 8 5.9473 0.3945 -3.3705 11 7 7.6208 1.5193 -2.4397 12 6 8.0947 2.1339 -3.6822 13 6 7.6940 3.6104 -3.7061 14 7 8.1685 4.2251 -4.9483 15 6 9.4980 4.8381 -5.0011 16 6 7.3692 4.2267 -6.0603 17 1 6.2966 4.1589 -5.9544 18 6 7.9377 4.3155 -7.3235 19 7 9.2459 4.2710 -7.4611 20 14 6.8460 4.4983 -8.8283 21 1 5.4222 4.5229 -8.4069 22 1 7.1764 5.7654 -9.5286 23 1 7.0714 3.3524 -9.7455 24 6 8.4764 1.5177 -1.2505 25 6 7.8698 2.4325 -0.1846 26 6 8.5824 0.0939 -0.7005 27 6 4.2089 1.1314 -1.1949 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.6687 1.1726 2.1267 34 1 7.3071 0.8840 0.1539 35 1 9.1802 2.0511 -3.7376 36 1 7.6474 1.6222 -4.5343 37 1 6.6086 3.6931 -3.6507 38 1 8.1414 4.1221 -2.8540 39 1 10.2158 4.1161 -5.3904 40 1 9.4701 5.7108 -5.6536 41 1 9.7973 5.1434 -3.9985 42 1 9.6432 4.3335 -8.3439 43 1 9.4696 1.8792 -1.5170 44 1 6.8520 2.6982 -0.4703 45 1 7.8543 1.9132 0.7737 46 1 8.4708 3.3375 -0.0977 47 1 9.4375 -0.4078 -1.1535 48 1 8.7139 0.1311 0.3809 49 1 7.6714 -0.4557 -0.9370 50 1 3.6900 1.1732 -2.1412 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755813416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:26 Heat of formation + Delta-G solvation = 66.124218 kcal Electronic energy + Delta-G solvation = -30065.431258 eV Core-core repulsion = 26097.677980 eV Total energy + Delta-G solvation = -3967.753278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.64583 -39.30306 -38.00514 -37.11208 -35.77560 -33.47061 -32.86962 -31.55749 -31.04917 -28.14983 -27.82924 -27.28312 -25.89070 -25.77529 -24.94812 -23.21688 -22.61940 -22.21523 -20.46965 -18.81635 -17.72522 -17.13134 -16.76748 -16.73642 -16.65816 -15.86023 -15.70074 -15.38223 -15.22781 -14.68947 -14.50548 -14.41431 -13.85971 -13.67848 -13.25076 -13.23041 -12.90017 -12.86853 -12.68381 -12.51377 -12.44225 -12.31405 -11.91255 -11.78290 -11.64788 -11.58178 -11.23758 -10.86166 -10.84923 -10.65906 -10.50424 -10.20161 -10.06799 -10.02664 -9.95373 -9.92508 -9.77752 -9.40276 -8.93890 -8.60835 -8.33967 -6.74331 -5.73356 -3.21739 0.61492 1.03148 2.65509 3.11658 3.39176 3.41169 3.46280 3.48686 3.83844 4.13423 4.41165 4.51027 4.53562 4.54783 4.66815 4.74958 4.78179 4.80931 4.95322 5.03363 5.04848 5.12890 5.28818 5.35478 5.38168 5.40097 5.44459 5.46253 5.51668 5.63319 5.74748 5.81650 5.90374 5.93273 5.98312 6.05191 6.21573 6.28866 6.39736 6.58804 6.72592 6.76636 6.77910 7.05397 7.38238 7.61965 7.70524 7.73217 7.82314 8.22726 8.40902 9.24087 9.84836 10.33540 11.31311 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.003241 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.420354 B = 8637.285607 C =10302.320333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.110 3.890 4 C -0.165 4.165 5 C 0.138 3.862 6 N -0.501 5.501 7 C 0.096 3.904 8 C -0.200 4.200 9 C 0.576 3.424 10 O -0.512 6.512 11 N -0.621 5.621 12 C 0.096 3.904 13 C 0.143 3.857 14 N -0.599 5.599 15 C 0.164 3.836 16 C -0.254 4.254 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.909 5.909 20 Si 0.906 3.094 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.289 1.289 24 C 0.131 3.869 25 C -0.197 4.197 26 C -0.189 4.189 27 C 0.001 3.999 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.156 0.844 34 H 0.225 0.775 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.030 0.970 40 H 0.045 0.955 41 H -0.005 1.005 42 H 0.252 0.748 43 H 0.104 0.896 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.067 0.933 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.398 -5.987 20.704 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.033 3.967 4 C -0.167 4.167 5 C -0.019 4.019 6 N -0.209 5.209 7 C -0.059 4.059 8 C -0.206 4.206 9 C 0.363 3.637 10 O -0.386 6.386 11 N -0.357 5.357 12 C -0.028 4.028 13 C 0.014 3.986 14 N -0.322 5.322 15 C 0.020 3.980 16 C -0.384 4.384 17 H 0.086 0.914 18 C -0.194 4.194 19 N -0.554 5.554 20 Si 0.736 3.264 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.215 1.215 24 C 0.026 3.974 25 C -0.254 4.254 26 C -0.246 4.246 27 C -0.025 4.025 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.173 0.827 34 H 0.240 0.760 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.014 0.986 42 H 0.062 0.938 43 H 0.122 0.878 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.098 0.902 49 H 0.086 0.914 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.992 -6.441 20.767 23.165 hybrid contribution -1.237 0.391 -1.768 2.193 sum -9.229 -6.050 18.999 21.972 Atomic orbital electron populations 1.22772 0.80764 1.02970 1.00108 1.87985 1.19786 1.27283 1.95431 1.21206 0.88798 0.85278 1.01422 1.20422 0.95604 1.06456 0.94236 1.22842 0.90374 0.91417 0.97239 1.67907 1.07623 1.14737 1.30665 1.26009 1.04325 0.88772 0.86814 1.21259 0.95004 1.08315 0.95978 1.17921 0.81455 0.77528 0.86747 1.90784 1.71527 1.38435 1.37872 1.47911 1.15091 1.59610 1.13045 1.22735 0.99566 0.96212 0.84295 1.21183 0.97690 0.90359 0.89330 1.43944 1.16663 1.63448 1.08112 1.20846 0.85814 0.97283 0.94103 1.19267 0.89547 1.45408 0.84191 0.91403 1.25108 0.95793 1.00730 0.97762 1.70052 1.08593 1.54838 1.21923 0.86158 0.79925 0.77285 0.83073 1.20286 1.21628 1.21545 1.21220 0.95572 0.94912 0.85675 1.23431 1.02538 1.00678 0.98769 1.22758 1.03773 0.96634 1.01433 1.21563 0.92399 0.89831 0.98730 0.93828 0.89480 0.93966 0.91924 0.91949 0.82656 0.76021 0.91174 0.89552 0.94173 0.94377 0.95143 0.93597 0.98635 0.93755 0.87830 0.90528 0.89743 0.91523 0.90769 0.90190 0.91434 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.11 10.69 -35.23 -0.38 -4.48 16 3 C 0.11 1.01 6.08 36.01 0.22 1.23 16 4 C -0.17 -1.88 5.52 -104.54 -0.58 -2.46 16 5 C 0.14 1.48 10.85 -17.47 -0.19 1.29 16 6 N -0.50 -5.98 10.35 -12.91 -0.13 -6.11 16 7 C 0.10 1.17 5.49 -17.13 -0.09 1.07 16 8 C -0.20 -2.87 4.68 -104.82 -0.49 -3.36 16 9 C 0.58 9.87 5.81 -12.33 -0.07 9.80 16 10 O -0.51 -10.81 16.74 5.32 0.09 -10.72 16 11 N -0.62 -9.73 2.37 -167.21 -0.40 -10.12 16 12 C 0.10 1.83 5.93 -4.04 -0.02 1.81 16 13 C 0.14 2.96 6.03 -4.04 -0.02 2.93 16 14 N -0.60 -15.09 2.92 -181.12 -0.53 -15.62 16 15 C 0.16 3.99 9.00 59.85 0.54 4.52 16 16 C -0.25 -7.11 9.67 -15.06 -0.15 -7.26 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C 0.00 0.12 5.22 -17.43 -0.09 0.03 16 19 N -0.91 -26.45 10.48 55.49 0.58 -25.87 16 20 Si 0.91 22.29 29.56 -169.99 -5.02 17.27 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C 0.13 1.48 3.28 -67.93 -0.22 1.26 16 25 C -0.20 -2.01 7.86 37.16 0.29 -1.72 16 26 C -0.19 -1.81 8.22 37.16 0.31 -1.51 16 27 C 0.00 0.01 9.43 -38.87 -0.37 -0.35 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.06 0.53 8.09 -51.92 -0.42 0.11 16 33 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.22 2.33 0.61 -93.69 -0.06 2.27 16 35 H 0.07 1.30 7.86 -51.93 -0.41 0.89 16 36 H 0.09 1.98 7.38 -51.93 -0.38 1.60 16 37 H 0.04 0.87 8.04 -51.93 -0.42 0.45 16 38 H 0.04 0.70 7.86 -51.93 -0.41 0.30 16 39 H 0.03 0.79 7.34 -51.93 -0.38 0.41 16 40 H 0.05 1.21 7.27 -51.93 -0.38 0.83 16 41 H 0.00 -0.10 7.83 -51.93 -0.41 -0.51 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.10 1.08 7.76 -51.93 -0.40 0.68 16 44 H 0.08 0.94 5.11 -51.93 -0.27 0.68 16 45 H 0.08 0.73 5.44 -51.92 -0.28 0.45 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.08 0.57 6.89 -51.93 -0.36 0.21 16 49 H 0.07 0.78 5.47 -51.93 -0.28 0.49 16 50 H 0.14 1.95 8.04 -52.49 -0.42 1.53 16 LS Contribution 392.50 15.07 5.91 5.91 Total: -1.00 -33.74 392.50 -7.48 -41.22 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.78 Total: -0.10 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 0.17 Total: 8.63 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: -0.48 Total: -57.72 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.29 Total: -15.20 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.74 -7.48 -41.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755813416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.343 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds