Wall clock time and date at job start Tue Mar 31 2020 19:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00281 * 2 1 4 4 C 1.50699 * 109.47144 * 180.02562 * 3 2 1 5 5 C 1.38352 * 120.34659 * 270.04110 * 4 3 2 6 6 N 1.31928 * 121.08056 * 179.97438 * 5 4 3 7 7 C 1.31694 * 121.87520 * 359.97438 * 6 5 4 8 8 C 1.39519 * 120.57329 * 359.97438 * 7 6 5 9 9 C 1.47833 * 120.56248 * 180.02562 * 8 7 6 10 10 O 1.21556 * 119.99991 * 145.60251 * 9 8 7 11 11 N 1.34778 * 120.00137 * 325.60875 * 9 8 7 12 12 C 1.46499 * 119.99818 * 214.21091 * 11 9 8 13 13 C 1.53002 * 109.47235 * 90.00004 * 12 11 9 14 14 N 1.46499 * 109.47235 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99944 * 269.99771 * 14 13 12 16 16 C 1.36944 * 120.00063 * 89.99522 * 14 13 12 17 17 H 1.07997 * 119.99704 * 24.74288 * 16 14 13 18 18 C 1.38806 * 119.99846 * 204.73816 * 16 14 13 19 19 N 1.31619 * 120.00364 * 6.41422 * 18 16 14 20 20 Si 1.86805 * 120.00024 * 186.41313 * 18 16 14 21 21 H 1.48501 * 109.46875 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47080 * 120.00101 * 20 18 16 23 23 H 1.48493 * 109.47164 * 240.00410 * 20 18 16 24 24 C 1.46500 * 120.00130 * 34.20867 * 11 9 8 25 25 C 1.53001 * 109.46872 * 291.68472 * 24 11 9 26 26 C 1.53001 * 109.46807 * 51.68451 * 24 11 9 27 27 C 1.38355 * 120.34809 * 90.00008 * 4 3 2 28 28 H 1.09004 * 109.47143 * 60.00209 * 1 2 3 29 29 H 1.08998 * 109.47512 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47318 * 300.00523 * 1 2 3 31 31 H 1.08990 * 109.47283 * 59.99579 * 3 2 1 32 32 H 1.09009 * 109.46673 * 300.00088 * 3 2 1 33 33 H 1.07999 * 119.46084 * 359.97438 * 5 4 3 34 34 H 1.08004 * 119.71050 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.47209 * 210.00044 * 12 11 9 36 36 H 1.08998 * 109.47252 * 329.99588 * 12 11 9 37 37 H 1.09004 * 109.46610 * 299.99840 * 13 12 11 38 38 H 1.08998 * 109.47341 * 59.99637 * 13 12 11 39 39 H 1.09002 * 109.46825 * 95.02911 * 15 14 13 40 40 H 1.09000 * 109.47252 * 215.02601 * 15 14 13 41 41 H 1.08994 * 109.47202 * 335.03206 * 15 14 13 42 42 H 0.97006 * 120.00257 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.47174 * 171.68794 * 24 11 9 44 44 H 1.09001 * 109.46992 * 12.00009 * 25 24 11 45 45 H 1.09009 * 109.46820 * 131.99629 * 25 24 11 46 46 H 1.08992 * 109.47081 * 251.99351 * 25 24 11 47 47 H 1.08997 * 109.46665 * 90.66007 * 26 24 11 48 48 H 1.08999 * 109.46997 * 210.65594 * 26 24 11 49 49 H 1.08996 * 109.47424 * 330.65992 * 26 24 11 50 50 H 1.08002 * 120.86061 * 0.03672 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2098 1.1301 1.1930 6 7 5.5248 1.0253 1.2094 7 6 6.2318 0.9693 0.0997 8 6 5.6038 1.0190 -1.1451 9 6 6.3976 0.9554 -2.3906 10 8 5.9473 0.3945 -3.3705 11 7 7.6208 1.5193 -2.4397 12 6 8.0947 2.1339 -3.6822 13 6 7.6940 3.6104 -3.7061 14 7 8.1685 4.2251 -4.9483 15 6 9.4980 4.8381 -5.0011 16 6 7.3692 4.2267 -6.0603 17 1 6.2966 4.1589 -5.9544 18 6 7.9377 4.3155 -7.3235 19 7 9.2459 4.2710 -7.4611 20 14 6.8460 4.4983 -8.8283 21 1 5.4222 4.5229 -8.4069 22 1 7.1764 5.7654 -9.5286 23 1 7.0714 3.3524 -9.7455 24 6 8.4764 1.5177 -1.2505 25 6 7.8698 2.4325 -0.1846 26 6 8.5824 0.0939 -0.7005 27 6 4.2089 1.1314 -1.1949 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.6687 1.1726 2.1267 34 1 7.3071 0.8840 0.1539 35 1 9.1802 2.0511 -3.7376 36 1 7.6474 1.6222 -4.5343 37 1 6.6086 3.6931 -3.6507 38 1 8.1414 4.1221 -2.8540 39 1 10.2158 4.1161 -5.3904 40 1 9.4701 5.7108 -5.6536 41 1 9.7973 5.1434 -3.9985 42 1 9.6432 4.3335 -8.3439 43 1 9.4696 1.8792 -1.5170 44 1 6.8520 2.6982 -0.4703 45 1 7.8543 1.9132 0.7737 46 1 8.4708 3.3375 -0.0977 47 1 9.4375 -0.4078 -1.1535 48 1 8.7139 0.1311 0.3809 49 1 7.6714 -0.4557 -0.9370 50 1 3.6900 1.1732 -2.1412 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755813416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:25 Heat of formation + Delta-G solvation = 43.875940 kcal Electronic energy + Delta-G solvation = -30066.396016 eV Core-core repulsion = 26097.677980 eV Total energy + Delta-G solvation = -3968.718036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.70230 -40.39410 -38.83596 -38.30939 -37.58377 -34.80952 -33.95610 -33.04362 -32.44511 -29.71840 -28.60225 -28.08786 -27.92880 -26.48509 -26.26636 -24.63996 -23.69410 -23.28478 -22.27477 -19.95503 -18.85976 -18.68473 -18.16337 -17.68529 -17.40966 -17.04718 -16.93570 -16.61616 -16.30194 -16.09036 -15.58695 -15.48821 -15.31749 -15.08152 -14.95857 -14.43752 -14.17084 -14.08289 -13.92702 -13.47306 -13.35576 -13.23942 -13.16297 -13.01247 -12.88682 -12.81592 -12.73358 -12.40845 -12.35255 -12.22087 -12.08128 -12.04833 -11.65823 -11.46005 -11.29033 -10.95283 -10.71772 -10.71263 -10.44261 -9.90955 -9.69977 -8.77562 -7.88143 -5.38654 -0.37447 0.05958 1.38105 1.42429 1.43193 1.52806 1.87876 2.46984 2.54550 3.04135 3.20134 3.27105 3.44013 3.65720 3.71973 3.75168 3.77084 3.87799 3.94418 3.96722 4.08213 4.21288 4.33563 4.47065 4.50046 4.51946 4.54505 4.56053 4.60444 4.62268 4.63526 4.75484 4.84147 4.86905 4.87594 4.90832 4.98298 5.09320 5.10943 5.17084 5.28265 5.34339 5.48967 5.57322 5.64771 5.74837 6.15772 6.29335 6.35420 6.75873 6.91359 7.12435 7.81640 8.23135 9.14271 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.003241 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.420354 B = 8637.285607 C =10302.320333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.109 3.891 4 C -0.165 4.165 5 C 0.145 3.855 6 N -0.504 5.504 7 C 0.108 3.892 8 C -0.220 4.220 9 C 0.575 3.425 10 O -0.568 6.568 11 N -0.618 5.618 12 C 0.115 3.885 13 C 0.150 3.850 14 N -0.615 5.615 15 C 0.177 3.823 16 C -0.267 4.267 17 H 0.058 0.942 18 C -0.045 4.045 19 N -0.932 5.932 20 Si 0.965 3.035 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.291 1.291 24 C 0.122 3.878 25 C -0.193 4.193 26 C -0.188 4.188 27 C -0.017 4.017 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.192 0.808 34 H 0.241 0.759 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.024 0.976 38 H 0.070 0.930 39 H 0.009 0.991 40 H 0.018 0.982 41 H 0.036 0.964 42 H 0.250 0.750 43 H 0.119 0.881 44 H 0.056 0.944 45 H 0.107 0.893 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.115 0.885 49 H 0.046 0.954 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.678 -5.639 24.058 26.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.033 3.967 4 C -0.167 4.167 5 C -0.011 4.011 6 N -0.212 5.212 7 C -0.047 4.047 8 C -0.225 4.225 9 C 0.365 3.635 10 O -0.447 6.447 11 N -0.352 5.352 12 C -0.010 4.010 13 C 0.023 3.977 14 N -0.339 5.339 15 C 0.033 3.967 16 C -0.397 4.397 17 H 0.076 0.924 18 C -0.241 4.241 19 N -0.579 5.579 20 Si 0.793 3.207 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.218 1.218 24 C 0.019 3.981 25 C -0.249 4.249 26 C -0.245 4.245 27 C -0.043 4.043 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.209 0.791 34 H 0.256 0.744 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.042 0.958 38 H 0.088 0.912 39 H 0.027 0.973 40 H 0.037 0.963 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.137 0.863 44 H 0.074 0.926 45 H 0.125 0.875 46 H 0.100 0.900 47 H 0.100 0.900 48 H 0.133 0.867 49 H 0.065 0.935 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.268 -6.088 24.186 26.275 hybrid contribution -1.210 0.262 -2.687 2.958 sum -9.478 -5.826 21.499 24.207 Atomic orbital electron populations 1.22952 0.79063 1.03851 1.01241 1.87932 1.21730 1.28064 1.95685 1.21305 0.87275 0.85191 1.02972 1.20661 0.96972 1.05602 0.93457 1.23438 0.90154 0.89218 0.98270 1.68019 1.08238 1.15024 1.29968 1.26237 1.05045 0.87562 0.85846 1.21055 0.95019 1.11044 0.95431 1.18433 0.81617 0.76381 0.87103 1.90746 1.72610 1.41183 1.40144 1.47885 1.15326 1.58700 1.13270 1.22150 0.99411 0.94899 0.84576 1.21196 0.96815 0.91212 0.88521 1.44133 1.16705 1.64454 1.08628 1.20625 0.84987 0.95476 0.95617 1.19445 0.89626 1.45055 0.85577 0.92380 1.25790 0.97063 1.01057 1.00182 1.70193 1.09721 1.55796 1.22164 0.85242 0.78587 0.77091 0.79794 1.19770 1.20963 1.21788 1.21618 0.95457 0.96682 0.84317 1.23354 1.01378 1.01252 0.98966 1.22770 1.03054 0.95025 1.03637 1.21634 0.92511 0.90827 0.99334 0.93532 0.88841 0.91956 0.88801 0.91957 0.79099 0.74394 0.90285 0.94293 0.95783 0.91155 0.97285 0.96338 0.94553 0.94063 0.86254 0.92561 0.87539 0.89991 0.90019 0.86692 0.93528 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -8.26 10.69 -148.98 -1.59 -9.85 16 3 C 0.11 1.82 6.08 71.24 0.43 2.25 16 4 C -0.16 -3.54 5.52 -19.81 -0.11 -3.65 16 5 C 0.15 2.71 10.85 84.71 0.92 3.63 16 6 N -0.50 -10.56 10.35 -194.75 -2.01 -12.58 16 7 C 0.11 2.43 5.49 85.02 0.47 2.90 16 8 C -0.22 -6.39 4.68 -19.99 -0.09 -6.48 16 9 C 0.57 20.57 5.81 86.78 0.50 21.08 16 10 O -0.57 -25.87 16.74 -3.89 -0.07 -25.94 16 11 N -0.62 -19.47 2.37 -801.22 -1.89 -21.37 16 12 C 0.11 4.50 5.93 86.38 0.51 5.02 16 13 C 0.15 6.23 6.03 86.38 0.52 6.75 16 14 N -0.62 -31.44 2.92 -726.94 -2.13 -33.57 16 15 C 0.18 8.61 9.00 127.77 1.15 9.76 16 16 C -0.27 -15.31 9.67 84.03 0.81 -14.50 16 17 H 0.06 3.37 7.83 -2.91 -0.02 3.35 16 18 C -0.05 -2.61 5.22 84.86 0.44 -2.17 16 19 N -0.93 -55.47 10.48 21.65 0.23 -55.24 16 20 Si 0.96 46.82 29.56 68.60 2.03 48.85 16 21 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 24 C 0.12 2.51 3.28 44.99 0.15 2.65 16 25 C -0.19 -3.34 7.86 71.98 0.57 -2.77 16 26 C -0.19 -3.17 8.22 71.98 0.59 -2.58 16 27 C -0.02 -0.47 9.43 22.73 0.21 -0.25 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 0.97 8.09 -2.39 -0.02 0.95 16 32 H 0.06 1.02 8.09 -2.38 -0.02 1.00 16 33 H 0.19 2.14 8.06 -2.91 -0.02 2.11 16 34 H 0.24 4.35 0.61 -41.62 -0.03 4.32 16 35 H 0.08 2.94 7.86 -2.38 -0.02 2.92 16 36 H 0.04 1.90 7.38 -2.39 -0.02 1.88 16 37 H 0.02 1.06 8.04 -2.39 -0.02 1.04 16 38 H 0.07 2.46 7.86 -2.39 -0.02 2.44 16 39 H 0.01 0.47 7.34 -2.39 -0.02 0.45 16 40 H 0.02 0.96 7.27 -2.39 -0.02 0.94 16 41 H 0.04 1.44 7.83 -2.39 -0.02 1.42 16 42 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 43 H 0.12 2.13 7.76 -2.39 -0.02 2.11 16 44 H 0.06 1.27 5.11 -2.39 -0.01 1.26 16 45 H 0.11 1.40 5.44 -2.38 -0.01 1.39 16 46 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.11 1.15 6.89 -2.39 -0.02 1.13 16 49 H 0.05 1.02 5.47 -2.39 -0.01 1.01 16 50 H 0.13 3.79 8.04 -2.91 -0.02 3.76 16 Total: -1.00 -77.03 392.50 3.81 -73.23 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.92 Total: 13.28 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: 8.33 Total: 23.20 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -5.81 Total: -122.76 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -1.66 Total: -35.79 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -77.03 3.81 -73.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755813416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.102 kcal (2) G-P(sol) polarization free energy of solvation -77.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds