Wall clock time and date at job start Tue Mar 31 2020 19:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47265 * 2 1 4 4 O 1.42897 * 109.46868 * 179.97438 * 3 2 1 5 5 C 1.35433 * 116.99906 * 179.97438 * 4 3 2 6 6 N 1.32230 * 119.79427 * 0.02562 * 5 4 3 7 7 C 1.31883 * 121.79444 * 179.97438 * 6 5 4 8 8 C 1.50705 * 119.40655 * 179.97438 * 7 6 5 9 9 C 1.38352 * 121.18612 * 0.27376 * 7 6 5 10 10 C 1.38339 * 119.45867 * 359.45575 * 9 7 6 11 11 C 1.39986 * 118.34827 * 0.52956 * 10 9 7 12 12 C 1.47520 * 120.59715 * 179.71073 * 11 10 9 13 13 O 1.21588 * 119.99820 * 148.29847 * 12 11 10 14 14 N 1.34775 * 119.99989 * 328.29985 * 12 11 10 15 15 C 1.46498 * 120.00037 * 7.06973 * 14 12 11 16 16 C 1.53010 * 109.46678 * 100.73512 * 15 14 12 17 17 C 1.46505 * 119.99615 * 187.07724 * 14 12 11 18 18 C 1.52998 * 109.47124 * 90.00178 * 17 14 12 19 19 N 1.46505 * 109.47124 * 179.97438 * 18 17 14 20 20 C 1.36934 * 120.00104 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00209 * 359.97438 * 20 19 18 22 22 C 1.38814 * 119.99763 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00159 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99773 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47301 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47317 * 119.99408 * 24 22 20 27 27 H 1.48498 * 109.47088 * 239.99941 * 24 22 20 28 28 H 1.08997 * 109.47400 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47165 * 300.00614 * 1 2 3 30 30 H 1.09007 * 109.46928 * 59.99860 * 1 2 3 31 31 H 1.08998 * 109.46659 * 239.99793 * 2 1 3 32 32 H 1.09007 * 109.46928 * 120.00139 * 2 1 3 33 33 H 1.08996 * 109.47007 * 59.99663 * 3 2 1 34 34 H 1.08999 * 109.46978 * 299.99799 * 3 2 1 35 35 H 1.08996 * 109.46885 * 89.99954 * 8 7 6 36 36 H 1.09005 * 109.46993 * 329.99876 * 8 7 6 37 37 H 1.09000 * 109.47104 * 209.99789 * 8 7 6 38 38 H 1.08006 * 120.27075 * 179.72424 * 9 7 6 39 39 H 1.08001 * 120.82352 * 180.24061 * 10 9 7 40 40 H 1.08999 * 109.47076 * 220.72982 * 15 14 12 41 41 H 1.08991 * 109.47294 * 340.73874 * 15 14 12 42 42 H 1.08999 * 109.47346 * 59.99659 * 16 15 14 43 43 H 1.08996 * 109.46744 * 180.02562 * 16 15 14 44 44 H 1.08999 * 109.46934 * 299.99557 * 16 15 14 45 45 H 1.09002 * 109.46623 * 209.99793 * 17 14 12 46 46 H 1.09000 * 109.47401 * 329.99782 * 17 14 12 47 47 H 1.09002 * 109.47057 * 299.99350 * 18 17 14 48 48 H 1.08987 * 109.47551 * 59.99380 * 18 17 14 49 49 H 0.97001 * 119.99505 * 359.97438 * 19 18 17 50 50 H 0.97002 * 119.99698 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0839 2.6491 0.0001 6 7 3.3598 3.7555 -0.0003 7 6 3.9173 4.9508 -0.0003 8 6 3.0402 6.1763 -0.0014 9 6 5.2927 5.0998 -0.0054 10 6 6.0989 3.9756 0.0008 11 6 5.4851 2.7175 0.0007 12 6 6.2970 1.4858 0.0007 13 8 5.8836 0.4852 0.5540 14 7 7.4971 1.4698 -0.6125 15 6 8.0648 2.7114 -1.1438 16 6 9.1168 3.2483 -0.1709 17 6 8.2336 0.2107 -0.7480 18 6 7.8405 -0.4715 -2.0599 19 7 8.5776 -1.7304 -2.1956 20 6 8.3875 -2.5195 -3.2985 21 1 7.6940 -2.2142 -4.0680 22 6 9.0855 -3.7125 -3.4268 23 7 9.9303 -4.0850 -2.4887 24 14 8.8257 -4.7894 -4.9309 25 1 7.8312 -4.1517 -5.8305 26 1 10.1137 -4.9516 -5.6520 27 1 8.3253 -6.1213 -4.5056 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 2.8279 6.4720 1.0260 36 1 2.1054 5.9536 -0.5159 37 1 3.5529 6.9895 -0.5150 38 1 5.7335 6.0858 -0.0098 39 1 7.1751 4.0663 0.0008 40 1 8.5301 2.5142 -2.1095 41 1 7.2727 3.4500 -1.2661 42 1 9.9090 2.5096 -0.0485 43 1 9.5389 4.1723 -0.5660 44 1 8.6515 3.4455 0.7948 45 1 9.3044 0.4147 -0.7512 46 1 7.9910 -0.4441 0.0890 47 1 6.7698 -0.6756 -2.0567 48 1 8.0831 0.1832 -2.8968 49 1 9.2001 -2.0048 -1.5043 50 1 10.4183 -4.9185 -2.5786 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716247911.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:26 Heat of formation + Delta-G solvation = -31.591277 kcal Electronic energy + Delta-G solvation = -29474.623550 eV Core-core repulsion = 25502.633010 eV Total energy + Delta-G solvation = -3971.990540 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 15.74 seconds Orbital eigenvalues (eV) -42.26943 -40.61284 -39.35878 -37.62173 -36.60397 -35.05480 -34.50537 -33.25454 -32.64589 -31.66178 -29.87713 -28.73148 -27.41906 -25.81596 -24.59797 -24.30346 -23.78133 -23.17353 -22.37774 -20.79650 -19.37992 -19.18839 -18.43319 -18.08680 -17.57657 -17.00510 -16.79328 -16.23359 -16.16882 -15.71323 -15.63575 -15.49071 -15.24104 -15.08533 -14.91687 -14.62366 -14.47443 -13.94376 -13.72576 -13.47644 -13.27484 -13.24388 -13.11679 -13.06405 -12.95078 -12.94170 -12.81765 -12.65595 -12.40640 -12.32484 -12.12251 -12.07945 -12.02437 -11.89659 -11.59938 -11.24504 -11.02665 -10.85072 -10.51961 -9.84049 -9.46811 -9.10629 -8.00786 -5.32044 -0.35796 0.17388 1.43488 1.46055 1.55839 1.62081 1.88536 1.92932 2.52887 2.64147 3.02875 3.32110 3.46151 3.65085 3.79077 3.85771 3.90536 3.95932 4.04219 4.05277 4.13885 4.17708 4.25383 4.32408 4.36576 4.47925 4.48354 4.50068 4.53054 4.67310 4.69934 4.82613 4.84740 4.87166 4.94371 4.96514 5.01588 5.04487 5.05792 5.08400 5.15483 5.25811 5.37303 5.39657 5.48560 5.51758 6.17244 6.20610 6.33096 6.72519 7.08954 7.26688 7.96913 8.23925 9.22803 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010230 B = 0.003113 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.274896 B = 8992.786312 C =11048.038694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.071 3.929 4 O -0.312 6.312 5 C 0.353 3.647 6 N -0.558 5.558 7 C 0.180 3.820 8 C -0.105 4.105 9 C -0.205 4.205 10 C -0.025 4.025 11 C -0.239 4.239 12 C 0.558 3.442 13 O -0.570 6.570 14 N -0.598 5.598 15 C 0.065 3.935 16 C -0.174 4.174 17 C 0.125 3.875 18 C 0.151 3.849 19 N -0.741 5.741 20 C -0.252 4.252 21 H 0.071 0.929 22 C -0.072 4.072 23 N -0.967 5.967 24 Si 0.979 3.021 25 H -0.268 1.268 26 H -0.285 1.285 27 H -0.292 1.292 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.192 0.808 39 H 0.194 0.806 40 H 0.085 0.915 41 H 0.118 0.882 42 H 0.057 0.943 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.100 0.900 46 H 0.059 0.941 47 H -0.007 1.007 48 H 0.031 0.969 49 H 0.376 0.624 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.794 28.763 6.201 32.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C -0.004 4.004 4 O -0.218 6.218 5 C 0.173 3.827 6 N -0.284 5.284 7 C 0.043 3.957 8 C -0.162 4.162 9 C -0.224 4.224 10 C -0.049 4.049 11 C -0.245 4.245 12 C 0.347 3.653 13 O -0.450 6.450 14 N -0.331 5.331 15 C -0.056 4.056 16 C -0.232 4.232 17 C 0.002 3.998 18 C 0.023 3.977 19 N -0.385 5.385 20 C -0.383 4.383 21 H 0.089 0.911 22 C -0.265 4.265 23 N -0.617 5.617 24 Si 0.807 3.193 25 H -0.192 1.192 26 H -0.211 1.211 27 H -0.219 1.219 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.130 0.870 38 H 0.209 0.791 39 H 0.211 0.789 40 H 0.103 0.897 41 H 0.135 0.865 42 H 0.076 0.924 43 H 0.126 0.874 44 H 0.083 0.917 45 H 0.118 0.882 46 H 0.078 0.922 47 H 0.011 0.989 48 H 0.049 0.951 49 H 0.208 0.792 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.898 27.829 6.317 31.742 hybrid contribution 0.872 -1.555 -0.401 1.827 sum -13.026 26.274 5.916 29.917 Atomic orbital electron populations 1.21629 0.91613 1.03254 1.03014 1.21563 0.98084 0.94229 1.02620 1.22868 0.76163 0.98782 1.02594 1.86426 1.24193 1.25044 1.86177 1.19934 0.88418 0.85105 0.89214 1.67345 1.40417 0.98623 1.21989 1.22043 0.93867 0.91980 0.87843 1.20961 0.98847 0.91635 1.04709 1.22275 0.93025 1.01207 1.05903 1.22790 1.03561 0.89113 0.89446 1.19892 0.91283 0.95494 1.17869 1.18390 0.81087 0.87677 0.78102 1.90791 1.71441 1.36981 1.45771 1.47812 1.18627 1.09498 1.57127 1.22736 0.98769 0.85380 0.98719 1.22278 0.98546 1.03015 0.99351 1.21306 0.96706 0.84961 0.96848 1.20913 0.93432 0.87282 0.96061 1.42374 1.50534 1.21457 1.24092 1.19606 1.19548 1.00798 0.98372 0.91102 1.25639 0.99476 0.99618 1.01741 1.69827 1.31420 1.24470 1.35988 0.85006 0.77453 0.78202 0.78664 1.19234 1.21128 1.21877 0.91014 0.91329 0.91484 0.92405 0.92104 0.91060 0.91149 0.88463 0.90723 0.86967 0.79111 0.78930 0.89665 0.86452 0.92399 0.87395 0.91736 0.88167 0.92232 0.98947 0.95147 0.79155 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.91 71.98 0.71 -1.62 16 2 C -0.13 -3.15 6.30 30.60 0.19 -2.96 16 3 C 0.07 1.88 5.31 71.98 0.38 2.26 16 4 O -0.31 -11.07 8.68 -69.52 -0.60 -11.67 16 5 C 0.35 10.92 7.48 85.13 0.64 11.56 16 6 N -0.56 -13.68 9.11 -296.05 -2.70 -16.38 16 7 C 0.18 2.90 6.78 42.58 0.29 3.19 16 8 C -0.10 -0.78 10.16 71.24 0.72 -0.05 16 9 C -0.20 -2.49 9.71 22.32 0.22 -2.28 16 10 C -0.02 -0.43 7.58 22.72 0.17 -0.26 16 11 C -0.24 -6.93 5.58 -19.91 -0.11 -7.04 16 12 C 0.56 20.37 7.33 86.69 0.64 21.00 16 13 O -0.57 -26.74 15.39 13.77 0.21 -26.53 16 14 N -0.60 -18.72 2.49 -825.59 -2.05 -20.78 16 15 C 0.06 1.27 5.60 86.38 0.48 1.75 16 16 C -0.17 -2.40 9.16 71.99 0.66 -1.74 16 17 C 0.13 4.73 5.56 86.38 0.48 5.21 16 18 C 0.15 6.96 6.58 86.38 0.57 7.53 16 19 N -0.74 -41.19 5.60 -343.46 -1.92 -43.11 16 20 C -0.25 -15.09 9.99 84.03 0.84 -14.25 16 21 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 22 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 23 N -0.97 -61.26 13.06 21.65 0.28 -60.97 16 24 Si 0.98 47.95 29.55 68.60 2.03 49.98 16 25 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 27 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.07 1.73 8.10 -2.39 -0.02 1.71 16 34 H 0.07 1.72 8.10 -2.39 -0.02 1.70 16 35 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.11 0.17 8.07 -2.39 -0.02 0.15 16 38 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 39 H 0.19 2.34 3.05 -2.91 -0.01 2.33 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.12 1.86 3.88 -2.58 -0.01 1.85 16 42 H 0.06 0.98 7.73 -2.39 -0.02 0.97 16 43 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.06 0.86 7.16 -2.39 -0.02 0.84 16 45 H 0.10 3.31 7.66 -2.39 -0.02 3.29 16 46 H 0.06 2.59 7.34 -2.39 -0.02 2.57 16 47 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 48 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.38 21.73 7.67 -92.71 -0.71 21.02 16 50 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -85.65 406.26 2.82 -82.83 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.23 Total: 28.22 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 7.35 Total: 18.42 kcal Atomic # 7 Polarization: -134.85 SS G_CDS: -6.39 Total: -141.24 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -0.39 Total: -38.20 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -85.65 2.82 -82.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716247911.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.235 kcal (2) G-P(sol) polarization free energy of solvation -85.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.74 seconds