Wall clock time and date at job start Tue Mar 31 2020 19:15:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08996 * 109.46806 * 2 1
4 4 C 1.52996 * 109.47117 * 120.00894 * 2 1 3
5 5 C 1.53005 * 109.46707 * 185.00219 * 4 2 1
6 6 N 1.46902 * 109.46588 * 179.97438 * 5 4 2
7 7 C 1.46904 * 110.99927 * 66.04963 * 6 5 4
8 8 C 1.46901 * 110.99587 * 189.99689 * 6 5 4
9 9 N 1.46501 * 109.46909 * 240.00950 * 2 1 3
10 10 C 1.34777 * 120.00601 * 84.99728 * 9 2 1
11 11 O 1.21591 * 119.99393 * 0.02562 * 10 9 2
12 12 N 1.34768 * 120.00297 * 179.97438 * 10 9 2
13 13 C 1.46503 * 120.00179 * 180.02562 * 12 10 9
14 14 C 1.50701 * 109.47448 * 180.02562 * 13 12 10
15 15 C 1.38299 * 119.93217 * 269.73027 * 14 13 12
16 16 C 1.38093 * 120.06953 * 179.72477 * 15 14 13
17 17 C 1.38883 * 119.92808 * 0.56550 * 16 15 14
18 18 O 1.35754 * 120.06438 * 179.68623 * 17 16 15
19 19 C 1.34826 * 116.99724 * 174.49160 * 18 17 16
20 20 H 1.07998 * 120.00100 * 5.04739 * 19 18 17
21 21 C 1.38654 * 119.99970 * 185.05457 * 19 18 17
22 22 N 1.31562 * 120.00282 * 179.97438 * 21 19 18
23 23 Si 1.86801 * 120.00220 * 359.97438 * 21 19 18
24 24 H 1.48498 * 109.47275 * 89.99838 * 23 21 19
25 25 H 1.48495 * 109.47094 * 210.00170 * 23 21 19
26 26 H 1.48506 * 109.46791 * 330.00186 * 23 21 19
27 27 C 1.38871 * 119.86468 * 359.70509 * 17 16 15
28 28 C 1.38101 * 119.93230 * 0.02562 * 27 17 16
29 29 H 1.08993 * 109.47382 * 299.99191 * 1 2 3
30 30 H 1.09002 * 109.47296 * 59.99669 * 1 2 3
31 31 H 1.09004 * 109.46855 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.46703 * 304.99852 * 4 2 1
33 33 H 1.08997 * 109.47669 * 64.99912 * 4 2 1
34 34 H 1.08996 * 109.46930 * 299.99706 * 5 4 2
35 35 H 1.08998 * 109.47181 * 60.00013 * 5 4 2
36 36 H 1.08993 * 109.47628 * 59.99749 * 7 6 5
37 37 H 1.08999 * 109.46912 * 180.02562 * 7 6 5
38 38 H 1.09000 * 109.46394 * 299.99089 * 7 6 5
39 39 H 1.08998 * 109.47409 * 60.00411 * 8 6 5
40 40 H 1.09007 * 109.47270 * 180.02562 * 8 6 5
41 41 H 1.09004 * 109.47565 * 300.00226 * 8 6 5
42 42 H 0.97007 * 119.99518 * 264.99754 * 9 2 1
43 43 H 0.97000 * 120.00448 * 0.02562 * 12 10 9
44 44 H 1.09002 * 109.46848 * 59.99850 * 13 12 10
45 45 H 1.09001 * 109.46885 * 300.00464 * 13 12 10
46 46 H 1.08005 * 119.96050 * 359.97425 * 15 14 13
47 47 H 1.07999 * 120.03730 * 180.26989 * 16 15 14
48 48 H 0.96996 * 120.00604 * 179.97438 * 22 21 19
49 49 H 1.08002 * 120.03853 * 179.97438 * 27 17 16
50 50 H 1.07997 * 119.96732 * 179.97438 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7214 1.2491
5 6 3.5649 -0.6134 1.3135
6 7 4.0545 -1.3055 2.5132
7 6 3.8101 -2.7513 2.4234
8 6 5.4789 -1.0255 2.7380
9 7 2.0183 -0.6904 -1.1963
10 6 2.1470 -0.0180 -2.3572
11 8 1.8583 1.1619 -2.4115
12 7 2.5967 -0.6531 -3.4576
13 6 2.7371 0.0780 -4.7194
14 6 3.2535 -0.8539 -5.7852
15 6 4.6155 -0.9875 -5.9843
16 6 5.0919 -1.8449 -6.9563
17 6 4.2014 -2.5646 -7.7423
18 8 4.6666 -3.4035 -8.7029
19 6 3.7554 -4.1563 -9.3517
20 1 2.7024 -4.0174 -9.1562
21 6 4.1703 -5.1090 -10.2697
22 7 3.2813 -5.8440 -10.9023
23 14 5.9917 -5.3490 -10.6082
24 1 6.5381 -6.3685 -9.6769
25 1 6.1788 -5.8067 -12.0084
26 1 6.7060 -4.0625 -10.4081
27 6 2.8341 -2.4241 -7.5437
28 6 2.3640 -1.5693 -6.5663
29 1 -0.3634 0.5137 0.8900
30 1 -0.3634 0.5139 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 1.6054 -0.2620 2.1368
33 1 1.7517 -1.7717 1.2054
34 1 3.9995 -1.0727 0.4257
35 1 3.8532 0.4369 1.3573
36 1 4.3269 -3.1538 1.5523
37 1 4.1817 -3.2392 3.3244
38 1 2.7397 -2.9334 2.3272
39 1 5.6219 0.0470 2.8705
40 1 5.8158 -1.5504 3.6319
41 1 6.0563 -1.3655 1.8782
42 1 2.2490 -1.6317 -1.1528
43 1 2.8274 -1.5942 -3.4142
44 1 3.4382 0.9019 -4.5858
45 1 1.7666 0.4721 -5.0208
46 1 5.3074 -0.4235 -5.3761
47 1 6.1558 -1.9520 -7.1084
48 1 3.5715 -6.5102 -11.5448
49 1 2.1391 -2.9822 -8.1536
50 1 1.3009 -1.4593 -6.4116
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000069820761.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:15:53
Heat of formation + Delta-G solvation = -33.847107 kcal
Electronic energy + Delta-G solvation = -27984.967019 eV
Core-core repulsion = 24012.878659 eV
Total energy + Delta-G solvation = -3972.088360 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-40.19816 -39.30279 -38.24812 -37.12715 -35.97607 -34.36029 -32.52215 -31.94486
-30.39949 -29.94822 -29.28175 -27.98984 -26.06444 -25.03448 -24.45778 -22.21135
-21.98984 -21.22785 -20.73555 -20.59238 -18.56488 -17.98933 -17.37514 -16.76508
-15.85490 -15.75286 -15.44930 -15.26832 -15.01580 -14.88513 -14.57623 -14.19118
-14.03974 -13.90730 -13.69697 -13.46765 -13.37606 -13.16906 -12.81361 -12.75411
-12.68719 -12.37364 -12.29225 -12.17573 -12.06322 -11.99622 -11.55847 -11.48390
-11.24920 -11.02877 -10.96220 -10.85863 -10.78725 -10.24372 -10.17643 -9.50292
-9.33258 -8.97149 -8.84313 -8.74293 -8.39624 -7.50175 -6.51709 -4.18735
1.90622 2.00997 2.81727 3.15341 3.18933 3.23583 3.33108 3.50263
4.14864 4.18592 4.42036 4.48822 4.63250 4.71254 4.73092 4.80672
4.95709 5.00133 5.04959 5.13503 5.14091 5.20280 5.26667 5.29739
5.36217 5.43626 5.48436 5.51788 5.55196 5.57166 5.70213 5.73244
5.78422 5.89950 6.01378 6.02208 6.23745 6.42384 6.44048 6.55754
6.58714 6.59719 6.66240 6.83523 6.97248 7.11450 7.17727 7.48253
7.68869 7.92425 8.02434 8.61904 8.82796 9.43495 10.55421
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.013936 B = 0.001995 C = 0.001868
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2008.634323 B =14035.186168 C =14989.360964
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.162 3.838
3 H 0.088 0.912
4 C -0.123 4.123
5 C 0.053 3.947
6 N -0.548 5.548
7 C 0.019 3.981
8 C 0.023 3.977
9 N -0.745 5.745
10 C 0.702 3.298
11 O -0.596 6.596
12 N -0.739 5.739
13 C 0.197 3.803
14 C -0.205 4.205
15 C -0.056 4.056
16 C -0.196 4.196
17 C 0.166 3.834
18 O -0.213 6.213
19 C -0.392 4.392
20 H 0.108 0.892
21 C 0.064 3.936
22 N -0.875 5.875
23 Si 0.906 3.094
24 H -0.273 1.273
25 H -0.281 1.281
26 H -0.259 1.259
27 C -0.224 4.224
28 C -0.052 4.052
29 H 0.064 0.936
30 H 0.063 0.937
31 H 0.055 0.945
32 H 0.087 0.913
33 H 0.068 0.932
34 H 0.038 0.962
35 H 0.075 0.925
36 H 0.026 0.974
37 H 0.067 0.933
38 H 0.071 0.929
39 H 0.068 0.932
40 H 0.068 0.932
41 H 0.026 0.974
42 H 0.393 0.607
43 H 0.396 0.604
44 H 0.065 0.935
45 H 0.065 0.935
46 H 0.114 0.886
47 H 0.118 0.882
48 H 0.281 0.719
49 H 0.134 0.866
50 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.241 7.636 24.724 25.877
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.056 3.944
3 H 0.106 0.894
4 C -0.161 4.161
5 C -0.074 4.074
6 N -0.272 5.272
7 C -0.129 4.129
8 C -0.125 4.125
9 N -0.401 5.401
10 C 0.402 3.598
11 O -0.475 6.475
12 N -0.394 5.394
13 C 0.074 3.926
14 C -0.206 4.206
15 C -0.075 4.075
16 C -0.215 4.215
17 C 0.113 3.887
18 O -0.117 6.117
19 C -0.467 4.467
20 H 0.125 0.875
21 C -0.140 4.140
22 N -0.512 5.512
23 Si 0.731 3.269
24 H -0.198 1.198
25 H -0.207 1.207
26 H -0.183 1.183
27 C -0.243 4.243
28 C -0.070 4.070
29 H 0.083 0.917
30 H 0.082 0.918
31 H 0.074 0.926
32 H 0.106 0.894
33 H 0.087 0.913
34 H 0.056 0.944
35 H 0.093 0.907
36 H 0.045 0.955
37 H 0.085 0.915
38 H 0.090 0.910
39 H 0.087 0.913
40 H 0.086 0.914
41 H 0.044 0.956
42 H 0.227 0.773
43 H 0.230 0.770
44 H 0.083 0.917
45 H 0.083 0.917
46 H 0.132 0.868
47 H 0.136 0.864
48 H 0.091 0.909
49 H 0.152 0.848
50 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges -0.576 8.700 24.792 26.281
hybrid contribution 1.237 -1.591 -1.028 2.262
sum 0.661 7.110 23.765 24.814
Atomic orbital electron populations
1.22186 0.95307 1.02052 1.02624 1.20763 0.93837 0.97287 0.82533
0.89356 1.21922 0.95141 1.01399 0.97674 1.22169 0.95310 0.99386
0.90578 1.62022 1.17432 1.09594 1.38170 1.22458 1.02017 0.87698
1.00733 1.22385 0.87469 1.02084 1.00569 1.45285 1.72216 1.13511
1.09130 1.16025 0.78332 0.85128 0.80340 1.90907 1.57452 1.14425
1.84702 1.45488 1.70692 1.14026 1.09221 1.19831 1.00535 0.92409
0.79834 1.19303 0.93622 1.05437 1.02283 1.20536 0.94292 0.96389
0.96242 1.20212 0.98794 1.02673 0.99815 1.19183 0.92080 0.89865
0.87542 1.83575 1.37315 1.47598 1.43231 1.20784 0.89679 1.15283
1.20946 0.87497 1.24493 1.00015 0.94371 0.95098 1.69641 1.34232
1.21572 1.25786 0.86172 0.83454 0.79636 0.77602 1.19830 1.20668
1.18323 1.21282 0.95565 1.04530 1.02970 1.20712 0.98370 0.94085
0.93878 0.91724 0.91818 0.92616 0.89446 0.91293 0.94413 0.90650
0.95506 0.91463 0.91045 0.91307 0.91358 0.95562 0.77347 0.76989
0.91702 0.91664 0.86807 0.86403 0.90899 0.84801 0.87083
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.32 9.48 37.16 0.35 -0.97 16
2 C 0.16 1.33 2.58 -67.93 -0.17 1.16 16
3 H 0.09 0.90 7.58 -51.93 -0.39 0.50 16
4 C -0.12 -0.78 4.68 -26.73 -0.13 -0.90 16
5 C 0.05 0.39 4.84 -3.82 -0.02 0.37 16
6 N -0.55 -3.99 5.02 -251.25 -1.26 -5.25 16
7 C 0.02 0.12 9.32 60.07 0.56 0.68 16
8 C 0.02 0.15 9.57 60.07 0.57 0.73 16
9 N -0.75 -6.79 4.53 -58.68 -0.27 -7.06 16
10 C 0.70 8.97 8.53 -86.93 -0.74 8.23 16
11 O -0.60 -9.93 16.01 5.29 0.08 -9.85 16
12 N -0.74 -8.85 5.55 -66.41 -0.37 -9.22 16
13 C 0.20 2.66 5.80 -5.19 -0.03 2.63 16
14 C -0.21 -3.11 5.25 -104.57 -0.55 -3.66 16
15 C -0.06 -0.87 9.69 -39.61 -0.38 -1.25 16
16 C -0.20 -3.61 9.99 -39.40 -0.39 -4.01 16
17 C 0.17 3.63 6.65 -39.11 -0.26 3.37 16
18 O -0.21 -5.39 8.59 0.05 0.00 -5.39 16
19 C -0.39 -10.65 9.95 30.89 0.31 -10.34 16
20 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16
21 C 0.06 1.75 5.49 -17.51 -0.10 1.65 16
22 N -0.88 -24.60 13.96 55.48 0.77 -23.82 16
23 Si 0.91 21.02 28.62 -169.99 -4.86 16.15 16
24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16
25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
26 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16
27 C -0.22 -4.54 9.17 -39.40 -0.36 -4.90 16
28 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16
29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16
33 H 0.07 0.39 6.55 -51.93 -0.34 0.05 16
34 H 0.04 0.30 7.73 -51.93 -0.40 -0.10 16
35 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16
36 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16
37 H 0.07 0.38 8.12 -51.93 -0.42 -0.05 16
38 H 0.07 0.40 6.47 -51.93 -0.34 0.06 16
39 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16
40 H 0.07 0.38 8.12 -51.92 -0.42 -0.04 16
41 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16
42 H 0.39 2.77 8.62 -40.82 -0.35 2.41 16
43 H 0.40 4.15 8.48 -40.82 -0.35 3.80 16
44 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16
45 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16
46 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16
47 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16
48 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16
49 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16
50 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16
LS Contribution 410.71 15.07 6.19 6.19
Total: -1.00 -30.66 410.71 -9.65 -40.31
By element:
Atomic # 1 Polarization: 14.62 SS G_CDS: -8.21 Total: 6.41 kcal
Atomic # 6 Polarization: -6.74 SS G_CDS: -1.72 Total: -8.47 kcal
Atomic # 7 Polarization: -44.23 SS G_CDS: -1.12 Total: -45.35 kcal
Atomic # 8 Polarization: -15.33 SS G_CDS: 0.09 Total: -15.24 kcal
Atomic # 14 Polarization: 21.02 SS G_CDS: -4.86 Total: 16.15 kcal
Total LS contribution 6.19 Total: 6.19 kcal
Total: -30.66 -9.65 -40.31 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000069820761.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.465 kcal
(2) G-P(sol) polarization free energy of solvation -30.664 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.199 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.312 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.847 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds