Wall clock time and date at job start Tue Mar 31 2020 19:15:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08996 * 109.46806 * 2 1
4 4 C 1.52996 * 109.47117 * 120.00894 * 2 1 3
5 5 C 1.53005 * 109.46707 * 185.00219 * 4 2 1
6 6 N 1.46902 * 109.46588 * 179.97438 * 5 4 2
7 7 C 1.46904 * 110.99927 * 66.04963 * 6 5 4
8 8 C 1.46901 * 110.99587 * 189.99689 * 6 5 4
9 9 N 1.46501 * 109.46909 * 240.00950 * 2 1 3
10 10 C 1.34777 * 120.00601 * 84.99728 * 9 2 1
11 11 O 1.21591 * 119.99393 * 0.02562 * 10 9 2
12 12 N 1.34768 * 120.00297 * 179.97438 * 10 9 2
13 13 C 1.46503 * 120.00179 * 180.02562 * 12 10 9
14 14 C 1.50701 * 109.47448 * 180.02562 * 13 12 10
15 15 C 1.38299 * 119.93217 * 269.73027 * 14 13 12
16 16 C 1.38093 * 120.06953 * 179.72477 * 15 14 13
17 17 C 1.38883 * 119.92808 * 0.56550 * 16 15 14
18 18 O 1.35754 * 120.06438 * 179.68623 * 17 16 15
19 19 C 1.34826 * 116.99724 * 174.49160 * 18 17 16
20 20 H 1.07998 * 120.00100 * 5.04739 * 19 18 17
21 21 C 1.38654 * 119.99970 * 185.05457 * 19 18 17
22 22 N 1.31562 * 120.00282 * 179.97438 * 21 19 18
23 23 Si 1.86801 * 120.00220 * 359.97438 * 21 19 18
24 24 H 1.48498 * 109.47275 * 89.99838 * 23 21 19
25 25 H 1.48495 * 109.47094 * 210.00170 * 23 21 19
26 26 H 1.48506 * 109.46791 * 330.00186 * 23 21 19
27 27 C 1.38871 * 119.86468 * 359.70509 * 17 16 15
28 28 C 1.38101 * 119.93230 * 0.02562 * 27 17 16
29 29 H 1.08993 * 109.47382 * 299.99191 * 1 2 3
30 30 H 1.09002 * 109.47296 * 59.99669 * 1 2 3
31 31 H 1.09004 * 109.46855 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.46703 * 304.99852 * 4 2 1
33 33 H 1.08997 * 109.47669 * 64.99912 * 4 2 1
34 34 H 1.08996 * 109.46930 * 299.99706 * 5 4 2
35 35 H 1.08998 * 109.47181 * 60.00013 * 5 4 2
36 36 H 1.08993 * 109.47628 * 59.99749 * 7 6 5
37 37 H 1.08999 * 109.46912 * 180.02562 * 7 6 5
38 38 H 1.09000 * 109.46394 * 299.99089 * 7 6 5
39 39 H 1.08998 * 109.47409 * 60.00411 * 8 6 5
40 40 H 1.09007 * 109.47270 * 180.02562 * 8 6 5
41 41 H 1.09004 * 109.47565 * 300.00226 * 8 6 5
42 42 H 0.97007 * 119.99518 * 264.99754 * 9 2 1
43 43 H 0.97000 * 120.00448 * 0.02562 * 12 10 9
44 44 H 1.09002 * 109.46848 * 59.99850 * 13 12 10
45 45 H 1.09001 * 109.46885 * 300.00464 * 13 12 10
46 46 H 1.08005 * 119.96050 * 359.97425 * 15 14 13
47 47 H 1.07999 * 120.03730 * 180.26989 * 16 15 14
48 48 H 0.96996 * 120.00604 * 179.97438 * 22 21 19
49 49 H 1.08002 * 120.03853 * 179.97438 * 27 17 16
50 50 H 1.07997 * 119.96732 * 179.97438 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7214 1.2491
5 6 3.5649 -0.6134 1.3135
6 7 4.0545 -1.3055 2.5132
7 6 3.8101 -2.7513 2.4234
8 6 5.4789 -1.0255 2.7380
9 7 2.0183 -0.6904 -1.1963
10 6 2.1470 -0.0180 -2.3572
11 8 1.8583 1.1619 -2.4115
12 7 2.5967 -0.6531 -3.4576
13 6 2.7371 0.0780 -4.7194
14 6 3.2535 -0.8539 -5.7852
15 6 4.6155 -0.9875 -5.9843
16 6 5.0919 -1.8449 -6.9563
17 6 4.2014 -2.5646 -7.7423
18 8 4.6666 -3.4035 -8.7029
19 6 3.7554 -4.1563 -9.3517
20 1 2.7024 -4.0174 -9.1562
21 6 4.1703 -5.1090 -10.2697
22 7 3.2813 -5.8440 -10.9023
23 14 5.9917 -5.3490 -10.6082
24 1 6.5381 -6.3685 -9.6769
25 1 6.1788 -5.8067 -12.0084
26 1 6.7060 -4.0625 -10.4081
27 6 2.8341 -2.4241 -7.5437
28 6 2.3640 -1.5693 -6.5663
29 1 -0.3634 0.5137 0.8900
30 1 -0.3634 0.5139 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 1.6054 -0.2620 2.1368
33 1 1.7517 -1.7717 1.2054
34 1 3.9995 -1.0727 0.4257
35 1 3.8532 0.4369 1.3573
36 1 4.3269 -3.1538 1.5523
37 1 4.1817 -3.2392 3.3244
38 1 2.7397 -2.9334 2.3272
39 1 5.6219 0.0470 2.8705
40 1 5.8158 -1.5504 3.6319
41 1 6.0563 -1.3655 1.8782
42 1 2.2490 -1.6317 -1.1528
43 1 2.8274 -1.5942 -3.4142
44 1 3.4382 0.9019 -4.5858
45 1 1.7666 0.4721 -5.0208
46 1 5.3074 -0.4235 -5.3761
47 1 6.1558 -1.9520 -7.1084
48 1 3.5715 -6.5102 -11.5448
49 1 2.1391 -2.9822 -8.1536
50 1 1.3009 -1.4593 -6.4116
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000069820761.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:15:52
Heat of formation + Delta-G solvation = -54.940300 kcal
Electronic energy + Delta-G solvation = -27985.881689 eV
Core-core repulsion = 24012.878659 eV
Total energy + Delta-G solvation = -3973.003030 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.25001 -40.82024 -38.98451 -38.54169 -36.78137 -35.56013 -34.45550 -32.86244
-31.87461 -31.11828 -30.03283 -28.46688 -27.72739 -26.11633 -25.45734 -23.72683
-22.79523 -22.07337 -21.88656 -21.50987 -19.88434 -19.51837 -19.08457 -17.61349
-16.82530 -16.56788 -16.46639 -16.22734 -16.15222 -15.85813 -15.76870 -15.63335
-15.55970 -15.25309 -14.74302 -14.53049 -14.34799 -14.29078 -14.08101 -14.03331
-13.76058 -13.29502 -13.22277 -13.12097 -12.97698 -12.67881 -12.58396 -12.55993
-12.47954 -12.32034 -12.15983 -11.94560 -11.86147 -11.62683 -11.31306 -11.29491
-10.91649 -10.31945 -9.85590 -9.73055 -9.31230 -9.11388 -8.51574 -6.24647
0.46715 0.53586 1.31803 1.34814 1.51563 1.85604 2.22246 2.26742
2.74314 2.97855 3.02040 3.11674 3.46206 3.84191 3.86199 4.00818
4.05004 4.13223 4.15080 4.29320 4.40337 4.44613 4.49730 4.53502
4.56708 4.67377 4.71226 4.72755 4.75406 4.80735 4.85010 4.94709
4.97394 5.00647 5.04797 5.12115 5.21254 5.23423 5.32740 5.35284
5.49932 5.53984 5.66481 5.70327 5.77962 5.87328 6.04314 6.06619
6.09910 6.18500 6.82480 7.13502 7.55368 7.64252 8.59626
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.013936 B = 0.001995 C = 0.001868
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2008.634323 B =14035.186168 C =14989.360964
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.163 3.837
3 H 0.069 0.931
4 C -0.109 4.109
5 C 0.056 3.944
6 N -0.557 5.557
7 C 0.018 3.982
8 C 0.022 3.978
9 N -0.730 5.730
10 C 0.701 3.299
11 O -0.635 6.635
12 N -0.733 5.733
13 C 0.203 3.797
14 C -0.172 4.172
15 C -0.044 4.044
16 C -0.192 4.192
17 C 0.129 3.871
18 O -0.242 6.242
19 C -0.399 4.399
20 H 0.083 0.917
21 C 0.010 3.990
22 N -0.921 5.921
23 Si 0.970 3.030
24 H -0.265 1.265
25 H -0.269 1.269
26 H -0.262 1.262
27 C -0.238 4.238
28 C -0.049 4.049
29 H 0.080 0.920
30 H 0.036 0.964
31 H 0.066 0.934
32 H 0.094 0.906
33 H 0.081 0.919
34 H 0.031 0.969
35 H 0.066 0.934
36 H 0.023 0.977
37 H 0.072 0.928
38 H 0.079 0.921
39 H 0.069 0.931
40 H 0.076 0.924
41 H 0.021 0.979
42 H 0.406 0.594
43 H 0.406 0.594
44 H 0.072 0.928
45 H 0.063 0.937
46 H 0.153 0.847
47 H 0.131 0.869
48 H 0.285 0.715
49 H 0.109 0.891
50 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.758 8.559 27.597 28.904
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.058 3.942
3 H 0.087 0.913
4 C -0.148 4.148
5 C -0.072 4.072
6 N -0.281 5.281
7 C -0.130 4.130
8 C -0.126 4.126
9 N -0.386 5.386
10 C 0.401 3.599
11 O -0.517 6.517
12 N -0.388 5.388
13 C 0.079 3.921
14 C -0.173 4.173
15 C -0.063 4.063
16 C -0.211 4.211
17 C 0.079 3.921
18 O -0.149 6.149
19 C -0.476 4.476
20 H 0.100 0.900
21 C -0.189 4.189
22 N -0.562 5.562
23 Si 0.793 3.207
24 H -0.190 1.190
25 H -0.194 1.194
26 H -0.186 1.186
27 C -0.257 4.257
28 C -0.068 4.068
29 H 0.099 0.901
30 H 0.055 0.945
31 H 0.085 0.915
32 H 0.113 0.887
33 H 0.100 0.900
34 H 0.049 0.951
35 H 0.085 0.915
36 H 0.042 0.958
37 H 0.091 0.909
38 H 0.098 0.902
39 H 0.088 0.912
40 H 0.095 0.905
41 H 0.040 0.960
42 H 0.242 0.758
43 H 0.242 0.758
44 H 0.091 0.909
45 H 0.082 0.918
46 H 0.170 0.830
47 H 0.149 0.851
48 H 0.095 0.905
49 H 0.127 0.873
50 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges 0.420 9.615 27.727 29.350
hybrid contribution 0.813 -1.613 -1.587 2.405
sum 1.232 8.001 26.140 27.365
Atomic orbital electron populations
1.22139 0.94916 1.02562 1.02083 1.20803 0.94049 0.96536 0.82853
0.91325 1.21803 0.94435 1.01859 0.96658 1.22121 0.95800 0.98868
0.90431 1.62046 1.17808 1.10260 1.37991 1.22502 1.02551 0.87028
1.00904 1.22416 0.87149 1.02290 1.00759 1.45185 1.71125 1.14041
1.08283 1.16123 0.78065 0.84677 0.81060 1.90890 1.59149 1.16300
1.85378 1.45235 1.70656 1.14370 1.08576 1.19713 1.00624 0.92005
0.79748 1.19539 0.93395 1.03311 1.01064 1.20936 0.95024 0.95162
0.95139 1.20513 0.99154 1.02047 0.99364 1.19737 0.93424 0.90568
0.88326 1.83523 1.36748 1.49313 1.45308 1.20705 0.89241 1.16039
1.21578 0.89962 1.25294 1.04323 0.94210 0.95050 1.69727 1.36083
1.23015 1.27335 0.85217 0.78150 0.79331 0.78036 1.18979 1.19390
1.18645 1.21265 0.94940 1.05541 1.03986 1.20916 0.99949 0.93117
0.92813 0.90133 0.94515 0.91522 0.88723 0.90025 0.95072 0.91508
0.95800 0.90925 0.90241 0.91239 0.90536 0.95990 0.75794 0.75827
0.90938 0.91824 0.82959 0.85106 0.90542 0.87276 0.84926
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.26 9.48 71.98 0.68 -1.58 16
2 C 0.16 2.38 2.58 44.99 0.12 2.50 16
3 H 0.07 1.32 7.58 -2.39 -0.02 1.30 16
4 C -0.11 -1.10 4.68 30.59 0.14 -0.95 16
5 C 0.06 0.69 4.84 86.30 0.42 1.11 16
6 N -0.56 -6.95 5.02 -948.82 -4.76 -11.72 16
7 C 0.02 0.18 9.32 127.69 1.19 1.37 16
8 C 0.02 0.25 9.57 127.69 1.22 1.47 16
9 N -0.73 -11.60 4.53 -457.82 -2.08 -13.67 16
10 C 0.70 16.34 8.53 179.06 1.53 17.87 16
11 O -0.64 -20.23 16.01 -4.00 -0.06 -20.29 16
12 N -0.73 -15.28 5.55 -482.29 -2.68 -17.95 16
13 C 0.20 4.79 5.80 85.63 0.50 5.29 16
14 C -0.17 -4.66 5.25 -19.83 -0.10 -4.77 16
15 C -0.04 -1.21 9.69 22.25 0.22 -1.00 16
16 C -0.19 -6.71 9.99 22.39 0.22 -6.49 16
17 C 0.13 5.69 6.65 22.58 0.15 5.84 16
18 O -0.24 -12.63 8.59 -22.74 -0.20 -12.83 16
19 C -0.40 -22.86 9.95 67.92 0.68 -22.18 16
20 H 0.08 4.93 5.44 -2.91 -0.02 4.92 16
21 C 0.01 0.56 5.49 84.83 0.47 1.03 16
22 N -0.92 -54.00 13.96 21.61 0.30 -53.70 16
23 Si 0.97 44.27 28.62 68.60 1.96 46.24 16
24 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16
25 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16
26 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16
27 C -0.24 -9.83 9.17 22.39 0.21 -9.63 16
28 C -0.05 -1.58 9.69 22.25 0.22 -1.36 16
29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16
30 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16
31 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16
32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16
33 H 0.08 0.65 6.55 -2.39 -0.02 0.64 16
34 H 0.03 0.43 7.73 -2.39 -0.02 0.41 16
35 H 0.07 0.95 8.06 -2.39 -0.02 0.93 16
36 H 0.02 0.25 8.14 -2.39 -0.02 0.23 16
37 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16
38 H 0.08 0.65 6.47 -2.39 -0.02 0.64 16
39 H 0.07 0.76 8.12 -2.39 -0.02 0.74 16
40 H 0.08 0.73 8.12 -2.38 -0.02 0.71 16
41 H 0.02 0.26 8.14 -2.38 -0.02 0.24 16
42 H 0.41 4.49 8.62 -92.70 -0.80 3.69 16
43 H 0.41 7.07 8.48 -92.71 -0.79 6.28 16
44 H 0.07 1.69 8.08 -2.39 -0.02 1.68 16
45 H 0.06 1.60 8.08 -2.39 -0.02 1.58 16
46 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16
47 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16
48 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16
49 H 0.11 5.03 5.64 -2.91 -0.02 5.02 16
50 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16
Total: -1.00 -69.66 410.71 -0.30 -69.96
By element:
Atomic # 1 Polarization: 26.09 SS G_CDS: -0.64 Total: 25.45 kcal
Atomic # 6 Polarization: -19.32 SS G_CDS: 7.84 Total: -11.48 kcal
Atomic # 7 Polarization: -87.83 SS G_CDS: -9.21 Total: -97.04 kcal
Atomic # 8 Polarization: -32.86 SS G_CDS: -0.26 Total: -33.12 kcal
Atomic # 14 Polarization: 44.27 SS G_CDS: 1.96 Total: 46.24 kcal
Total: -69.66 -0.30 -69.96 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000069820761.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.020 kcal
(2) G-P(sol) polarization free energy of solvation -69.656 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.637 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.304 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.960 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.940 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds