Wall clock time and date at job start Tue Mar 31 2020 19:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.52992 * 109.47579 * 239.99500 * 2 1 3 5 5 C 1.53002 * 109.47311 * 175.00394 * 4 2 1 6 6 N 1.46910 * 109.47184 * 180.02562 * 5 4 2 7 7 C 1.46901 * 110.99680 * 66.04236 * 6 5 4 8 8 C 1.46899 * 110.99994 * 189.99717 * 6 5 4 9 9 N 1.46504 * 109.46996 * 119.99612 * 2 1 3 10 10 C 1.34780 * 120.00101 * 275.00436 * 9 2 1 11 11 O 1.21585 * 119.99713 * 359.97438 * 10 9 2 12 12 N 1.34775 * 120.00087 * 179.97438 * 10 9 2 13 13 C 1.46498 * 119.99904 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.47300 * 179.97438 * 13 12 10 15 15 C 1.38300 * 119.93634 * 269.73138 * 14 13 12 16 16 C 1.38103 * 120.07235 * 179.72038 * 15 14 13 17 17 C 1.38881 * 119.92859 * 0.56979 * 16 15 14 18 18 O 1.35743 * 120.07033 * 179.67702 * 17 16 15 19 19 C 1.34829 * 117.00323 * 174.48588 * 18 17 16 20 20 H 1.08000 * 119.99772 * 5.06302 * 19 18 17 21 21 C 1.38655 * 120.00285 * 185.06067 * 19 18 17 22 22 N 1.31556 * 119.99986 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99817 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47529 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47049 * 119.99936 * 23 21 19 26 26 H 1.48497 * 109.46877 * 239.99598 * 23 21 19 27 27 C 1.38884 * 119.86119 * 359.70391 * 17 16 15 28 28 C 1.38100 * 119.93123 * 0.02562 * 27 17 16 29 29 H 1.09002 * 109.47349 * 300.00517 * 1 2 3 30 30 H 1.09009 * 109.46896 * 60.00370 * 1 2 3 31 31 H 1.09000 * 109.47521 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47331 * 295.00262 * 4 2 1 33 33 H 1.09000 * 109.47446 * 55.00179 * 4 2 1 34 34 H 1.08998 * 109.46933 * 299.99806 * 5 4 2 35 35 H 1.08998 * 109.47068 * 60.00080 * 5 4 2 36 36 H 1.08998 * 109.47246 * 60.00482 * 7 6 5 37 37 H 1.09007 * 109.46629 * 179.97438 * 7 6 5 38 38 H 1.08991 * 109.47339 * 300.00090 * 7 6 5 39 39 H 1.09007 * 109.46531 * 60.00004 * 8 6 5 40 40 H 1.08996 * 109.46991 * 179.97438 * 8 6 5 41 41 H 1.09001 * 109.47270 * 300.00423 * 8 6 5 42 42 H 0.96999 * 120.00481 * 94.99480 * 9 2 1 43 43 H 0.96993 * 120.00031 * 359.97438 * 12 10 9 44 44 H 1.08999 * 109.47244 * 60.00112 * 13 12 10 45 45 H 1.09004 * 109.47345 * 300.00174 * 13 12 10 46 46 H 1.08004 * 119.96372 * 359.97187 * 15 14 13 47 47 H 1.07998 * 120.03412 * 180.26808 * 16 15 14 48 48 H 0.97002 * 119.99992 * 180.02562 * 22 21 19 49 49 H 1.07996 * 120.03050 * 179.97438 * 27 17 16 50 50 H 1.08003 * 119.96708 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6134 -1.3134 6 7 4.0546 -1.3055 -2.5132 7 6 3.6041 -0.6246 -3.7344 8 6 5.5182 -1.4295 -2.4889 9 7 2.0183 -0.6906 1.1963 10 6 2.1469 -0.0181 2.3572 11 8 1.8581 1.1616 2.4116 12 7 2.5956 -0.6535 3.4578 13 6 2.7360 0.0775 4.7196 14 6 3.2511 -0.8547 5.7857 15 6 2.3609 -1.5656 6.5698 16 6 2.8300 -2.4250 7.5438 17 6 4.1972 -2.5661 7.7433 18 8 4.6613 -3.4051 8.7042 19 6 5.9963 -3.5824 8.7694 20 1 6.6494 -3.0060 8.1308 21 6 6.5308 -4.5045 9.6563 22 7 5.7353 -5.2068 10.4338 23 14 8.3804 -4.7494 9.7471 24 1 9.0478 -3.8457 8.7760 25 1 8.8541 -4.4383 11.1197 26 1 8.7097 -6.1594 9.4175 27 6 5.0885 -1.8466 6.9580 28 6 4.6132 -0.9930 5.9820 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7517 -1.7716 -1.2054 33 1 1.6055 -0.2619 -2.1369 34 1 3.8532 0.4368 -1.3572 35 1 3.9994 -1.0729 -0.4257 36 1 3.9830 0.3974 -3.7414 37 1 3.9810 -1.1574 -4.6075 38 1 2.5147 -0.6084 -3.7605 39 1 5.8200 -1.9985 -1.6094 40 1 5.8540 -1.9458 -3.3881 41 1 5.9664 -0.4366 -2.4506 42 1 2.2489 -1.6317 1.1529 43 1 2.8256 -1.5948 3.4145 44 1 1.7656 0.4722 5.0207 45 1 3.4377 0.9009 4.5864 46 1 1.2978 -1.4515 6.4177 47 1 2.1344 -2.9831 8.1528 48 1 6.1092 -5.8516 11.0546 49 1 6.1522 -1.9539 7.1111 50 1 5.3058 -0.4335 5.3707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069820764.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:56 Heat of formation + Delta-G solvation = -35.869124 kcal Electronic energy + Delta-G solvation = -27892.974222 eV Core-core repulsion = 23920.798181 eV Total energy + Delta-G solvation = -3972.176041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.14428 -39.12849 -38.21716 -36.95996 -35.94046 -34.29073 -32.42572 -31.85616 -30.28042 -29.82526 -29.19944 -27.97807 -25.89303 -25.04969 -24.57116 -22.06062 -21.98360 -21.19797 -20.70856 -20.59909 -18.50841 -18.06630 -17.06749 -16.65063 -15.90929 -15.69133 -15.44300 -15.21640 -14.89798 -14.69361 -14.59374 -14.41349 -13.89166 -13.71071 -13.62587 -13.51779 -13.33539 -13.13694 -12.79124 -12.75179 -12.65545 -12.34958 -12.21632 -12.11643 -12.03812 -11.69527 -11.41408 -11.39454 -11.28651 -11.03901 -10.97500 -10.77455 -10.68106 -10.48536 -10.13222 -9.42891 -9.27992 -8.92400 -8.77935 -8.74475 -8.28584 -7.33304 -6.53782 -4.12598 2.03162 2.12911 2.87032 3.07904 3.08981 3.14475 3.28080 3.51268 3.89590 4.25831 4.49100 4.58331 4.62063 4.67297 4.83073 4.97260 5.01316 5.09611 5.10326 5.16260 5.23508 5.24664 5.25937 5.30883 5.45236 5.45924 5.51448 5.52672 5.54535 5.67097 5.68669 5.82471 5.83459 5.96214 6.02913 6.12072 6.35413 6.45966 6.58752 6.60207 6.61415 6.63235 6.80275 6.91481 7.01076 7.16068 7.27853 7.34916 7.71377 7.91117 8.08414 8.66858 8.91722 9.60132 10.63826 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012756 B = 0.002016 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.454499 B =13882.452154 C =15511.266950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.162 3.838 3 H 0.086 0.914 4 C -0.123 4.123 5 C 0.054 3.946 6 N -0.548 5.548 7 C 0.020 3.980 8 C 0.023 3.977 9 N -0.745 5.745 10 C 0.701 3.299 11 O -0.598 6.598 12 N -0.739 5.739 13 C 0.198 3.802 14 C -0.213 4.213 15 C -0.054 4.054 16 C -0.196 4.196 17 C 0.161 3.839 18 O -0.174 6.174 19 C -0.393 4.393 20 H 0.094 0.906 21 C 0.040 3.960 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.237 4.237 28 C -0.050 4.050 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.025 0.975 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.025 0.975 42 H 0.395 0.605 43 H 0.397 0.603 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.112 0.888 47 H 0.118 0.882 48 H 0.271 0.729 49 H 0.128 0.872 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.003 7.159 -24.157 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.056 3.944 3 H 0.104 0.896 4 C -0.162 4.162 5 C -0.074 4.074 6 N -0.272 5.272 7 C -0.128 4.128 8 C -0.125 4.125 9 N -0.401 5.401 10 C 0.401 3.599 11 O -0.477 6.477 12 N -0.393 5.393 13 C 0.075 3.925 14 C -0.215 4.215 15 C -0.072 4.072 16 C -0.215 4.215 17 C 0.106 3.894 18 O -0.076 6.076 19 C -0.469 4.469 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.494 5.494 23 Si 0.767 3.233 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.257 4.257 28 C -0.069 4.069 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.043 0.957 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.229 0.771 43 H 0.231 0.769 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.130 0.870 47 H 0.136 0.864 48 H 0.081 0.919 49 H 0.146 0.854 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.538 7.481 -23.724 25.484 hybrid contribution 1.581 -0.238 0.055 1.600 sum -3.957 7.243 -23.669 25.067 Atomic orbital electron populations 1.22186 0.95354 1.02111 1.02510 1.20738 0.93796 0.97134 0.82702 0.89605 1.21917 0.94997 1.02008 0.97241 1.22171 0.95538 0.96730 0.92990 1.62009 1.11187 1.51510 1.02487 1.22450 1.01410 0.96506 0.92474 1.22390 0.86996 1.00174 1.02953 1.45274 1.72200 1.13641 1.09020 1.16040 0.78338 0.85115 0.80371 1.90898 1.57566 1.14489 1.84748 1.45517 1.70600 1.14042 1.09187 1.19810 1.00356 0.92432 0.79857 1.19229 0.93605 1.06088 1.02569 1.20540 0.98157 0.94414 0.94135 1.20221 0.92992 1.05075 1.03211 1.19441 0.92715 0.89575 0.87685 1.83977 1.25446 1.54381 1.43844 1.21402 0.78950 1.23028 1.23503 0.88876 1.25324 1.00609 0.95134 0.95459 1.70046 1.35328 1.22652 1.21325 0.85627 0.80376 0.78666 0.78653 1.19052 1.20066 1.20069 1.21161 1.00407 1.02997 1.01098 1.20646 0.94158 0.96097 0.96008 0.91808 0.91914 0.92486 0.90388 0.90357 0.94683 0.90422 0.95658 0.91474 0.91050 0.91152 0.91337 0.95644 0.77088 0.76927 0.91801 0.91867 0.86952 0.86392 0.91932 0.85445 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.48 37.15 0.35 -0.98 16 2 C 0.16 1.38 2.57 -67.93 -0.17 1.21 16 3 H 0.09 0.90 7.58 -51.93 -0.39 0.51 16 4 C -0.12 -0.81 4.68 -26.73 -0.13 -0.93 16 5 C 0.05 0.41 4.85 -3.82 -0.02 0.39 16 6 N -0.55 -4.16 5.02 -251.25 -1.26 -5.42 16 7 C 0.02 0.12 9.32 60.07 0.56 0.68 16 8 C 0.02 0.16 9.57 60.06 0.57 0.73 16 9 N -0.75 -7.03 4.53 -58.68 -0.27 -7.29 16 10 C 0.70 9.22 8.53 -86.92 -0.74 8.48 16 11 O -0.60 -10.18 16.01 5.29 0.08 -10.10 16 12 N -0.74 -9.19 5.55 -66.42 -0.37 -9.56 16 13 C 0.20 2.80 5.80 -5.20 -0.03 2.77 16 14 C -0.21 -3.40 5.25 -104.58 -0.55 -3.95 16 15 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 16 C -0.20 -3.92 9.99 -39.39 -0.39 -4.32 16 17 C 0.16 3.71 6.65 -39.10 -0.26 3.45 16 18 O -0.17 -4.81 9.76 0.07 0.00 -4.81 16 19 C -0.39 -10.64 9.49 30.89 0.29 -10.35 16 20 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 22 N -0.86 -24.61 13.67 55.48 0.76 -23.85 16 23 Si 0.94 19.98 29.55 -169.99 -5.02 14.95 16 24 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 25 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 27 C -0.24 -4.89 9.17 -39.39 -0.36 -5.25 16 28 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.45 6.55 -51.93 -0.34 0.11 16 34 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 35 H 0.08 0.64 7.67 -51.93 -0.40 0.24 16 36 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 37 H 0.07 0.37 8.12 -51.92 -0.42 -0.06 16 38 H 0.07 0.39 6.47 -51.93 -0.34 0.05 16 39 H 0.07 0.49 8.12 -51.92 -0.42 0.07 16 40 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 41 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 42 H 0.40 2.92 8.62 -40.82 -0.35 2.57 16 43 H 0.40 4.35 8.48 -40.82 -0.35 4.00 16 44 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 45 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 46 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 47 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 48 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 49 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 50 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 411.83 15.07 6.21 6.21 Total: -1.00 -31.77 411.83 -9.81 -41.58 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -8.20 Total: 7.92 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.74 Total: -9.63 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -1.14 Total: -46.12 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.09 Total: -14.90 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.77 -9.81 -41.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069820764.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.713 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds