Wall clock time and date at job start Tue Mar 31 2020 19:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.52992 * 109.47579 * 239.99500 * 2 1 3 5 5 C 1.53002 * 109.47311 * 175.00394 * 4 2 1 6 6 N 1.46910 * 109.47184 * 180.02562 * 5 4 2 7 7 C 1.46901 * 110.99680 * 66.04236 * 6 5 4 8 8 C 1.46899 * 110.99994 * 189.99717 * 6 5 4 9 9 N 1.46504 * 109.46996 * 119.99612 * 2 1 3 10 10 C 1.34780 * 120.00101 * 275.00436 * 9 2 1 11 11 O 1.21585 * 119.99713 * 359.97438 * 10 9 2 12 12 N 1.34775 * 120.00087 * 179.97438 * 10 9 2 13 13 C 1.46498 * 119.99904 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.47300 * 179.97438 * 13 12 10 15 15 C 1.38300 * 119.93634 * 269.73138 * 14 13 12 16 16 C 1.38103 * 120.07235 * 179.72038 * 15 14 13 17 17 C 1.38881 * 119.92859 * 0.56979 * 16 15 14 18 18 O 1.35743 * 120.07033 * 179.67702 * 17 16 15 19 19 C 1.34829 * 117.00323 * 174.48588 * 18 17 16 20 20 H 1.08000 * 119.99772 * 5.06302 * 19 18 17 21 21 C 1.38655 * 120.00285 * 185.06067 * 19 18 17 22 22 N 1.31556 * 119.99986 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99817 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47529 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47049 * 119.99936 * 23 21 19 26 26 H 1.48497 * 109.46877 * 239.99598 * 23 21 19 27 27 C 1.38884 * 119.86119 * 359.70391 * 17 16 15 28 28 C 1.38100 * 119.93123 * 0.02562 * 27 17 16 29 29 H 1.09002 * 109.47349 * 300.00517 * 1 2 3 30 30 H 1.09009 * 109.46896 * 60.00370 * 1 2 3 31 31 H 1.09000 * 109.47521 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47331 * 295.00262 * 4 2 1 33 33 H 1.09000 * 109.47446 * 55.00179 * 4 2 1 34 34 H 1.08998 * 109.46933 * 299.99806 * 5 4 2 35 35 H 1.08998 * 109.47068 * 60.00080 * 5 4 2 36 36 H 1.08998 * 109.47246 * 60.00482 * 7 6 5 37 37 H 1.09007 * 109.46629 * 179.97438 * 7 6 5 38 38 H 1.08991 * 109.47339 * 300.00090 * 7 6 5 39 39 H 1.09007 * 109.46531 * 60.00004 * 8 6 5 40 40 H 1.08996 * 109.46991 * 179.97438 * 8 6 5 41 41 H 1.09001 * 109.47270 * 300.00423 * 8 6 5 42 42 H 0.96999 * 120.00481 * 94.99480 * 9 2 1 43 43 H 0.96993 * 120.00031 * 359.97438 * 12 10 9 44 44 H 1.08999 * 109.47244 * 60.00112 * 13 12 10 45 45 H 1.09004 * 109.47345 * 300.00174 * 13 12 10 46 46 H 1.08004 * 119.96372 * 359.97187 * 15 14 13 47 47 H 1.07998 * 120.03412 * 180.26808 * 16 15 14 48 48 H 0.97002 * 119.99992 * 180.02562 * 22 21 19 49 49 H 1.07996 * 120.03050 * 179.97438 * 27 17 16 50 50 H 1.08003 * 119.96708 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6134 -1.3134 6 7 4.0546 -1.3055 -2.5132 7 6 3.6041 -0.6246 -3.7344 8 6 5.5182 -1.4295 -2.4889 9 7 2.0183 -0.6906 1.1963 10 6 2.1469 -0.0181 2.3572 11 8 1.8581 1.1616 2.4116 12 7 2.5956 -0.6535 3.4578 13 6 2.7360 0.0775 4.7196 14 6 3.2511 -0.8547 5.7857 15 6 2.3609 -1.5656 6.5698 16 6 2.8300 -2.4250 7.5438 17 6 4.1972 -2.5661 7.7433 18 8 4.6613 -3.4051 8.7042 19 6 5.9963 -3.5824 8.7694 20 1 6.6494 -3.0060 8.1308 21 6 6.5308 -4.5045 9.6563 22 7 5.7353 -5.2068 10.4338 23 14 8.3804 -4.7494 9.7471 24 1 9.0478 -3.8457 8.7760 25 1 8.8541 -4.4383 11.1197 26 1 8.7097 -6.1594 9.4175 27 6 5.0885 -1.8466 6.9580 28 6 4.6132 -0.9930 5.9820 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7517 -1.7716 -1.2054 33 1 1.6055 -0.2619 -2.1369 34 1 3.8532 0.4368 -1.3572 35 1 3.9994 -1.0729 -0.4257 36 1 3.9830 0.3974 -3.7414 37 1 3.9810 -1.1574 -4.6075 38 1 2.5147 -0.6084 -3.7605 39 1 5.8200 -1.9985 -1.6094 40 1 5.8540 -1.9458 -3.3881 41 1 5.9664 -0.4366 -2.4506 42 1 2.2489 -1.6317 1.1529 43 1 2.8256 -1.5948 3.4145 44 1 1.7656 0.4722 5.0207 45 1 3.4377 0.9009 4.5864 46 1 1.2978 -1.4515 6.4177 47 1 2.1344 -2.9831 8.1528 48 1 6.1092 -5.8516 11.0546 49 1 6.1522 -1.9539 7.1111 50 1 5.3058 -0.4335 5.3707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069820764.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:55 Heat of formation + Delta-G solvation = -58.171941 kcal Electronic energy + Delta-G solvation = -27893.941345 eV Core-core repulsion = 23920.798181 eV Total energy + Delta-G solvation = -3973.143164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.20703 -40.71357 -38.94615 -38.45822 -36.78362 -35.53540 -34.28407 -32.80839 -31.82560 -30.99625 -30.02214 -28.47285 -27.64352 -26.22401 -25.47604 -23.64001 -22.82225 -22.11346 -21.84948 -21.54451 -19.89455 -19.50104 -18.81130 -17.56622 -16.71110 -16.55729 -16.42190 -16.27695 -16.06183 -15.96729 -15.84872 -15.58207 -15.45005 -15.20496 -14.82638 -14.38557 -14.31832 -14.22133 -14.10530 -13.79484 -13.59201 -13.25492 -13.21654 -13.05053 -12.96828 -12.74431 -12.57857 -12.56320 -12.35133 -12.21548 -12.09290 -12.04180 -11.88881 -11.66428 -11.28298 -11.19618 -10.81299 -10.29801 -9.81525 -9.69729 -9.34087 -9.01334 -8.48410 -6.16498 0.53649 0.58254 1.35986 1.43007 1.53834 1.88370 2.16951 2.23822 2.81091 2.96550 3.13821 3.48536 3.49199 3.88768 3.91190 4.02428 4.04166 4.07620 4.18065 4.31048 4.44551 4.45478 4.48041 4.55513 4.57516 4.66492 4.72609 4.73262 4.75806 4.81826 4.87111 4.92650 5.00316 5.02048 5.04921 5.12193 5.14950 5.24508 5.27248 5.35651 5.50910 5.55246 5.67545 5.69506 5.76523 6.01731 6.05093 6.07171 6.09455 6.17118 6.96563 7.16190 7.66152 7.76033 8.74605 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012756 B = 0.002016 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.454499 B =13882.452154 C =15511.266950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.110 4.110 5 C 0.056 3.944 6 N -0.557 5.557 7 C 0.018 3.982 8 C 0.022 3.978 9 N -0.730 5.730 10 C 0.701 3.299 11 O -0.637 6.637 12 N -0.732 5.732 13 C 0.205 3.795 14 C -0.180 4.180 15 C -0.043 4.043 16 C -0.204 4.204 17 C 0.123 3.877 18 O -0.229 6.229 19 C -0.412 4.412 20 H 0.104 0.896 21 C -0.023 4.023 22 N -0.919 5.919 23 Si 1.018 2.982 24 H -0.251 1.251 25 H -0.270 1.270 26 H -0.269 1.269 27 C -0.244 4.244 28 C -0.045 4.045 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.024 0.976 35 H 0.070 0.930 36 H 0.022 0.978 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.022 0.978 42 H 0.408 0.592 43 H 0.407 0.593 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.147 0.853 47 H 0.115 0.885 48 H 0.273 0.727 49 H 0.120 0.880 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.152 8.095 -27.251 28.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.058 3.942 3 H 0.083 0.917 4 C -0.148 4.148 5 C -0.072 4.072 6 N -0.281 5.281 7 C -0.130 4.130 8 C -0.126 4.126 9 N -0.386 5.386 10 C 0.401 3.599 11 O -0.519 6.519 12 N -0.388 5.388 13 C 0.081 3.919 14 C -0.181 4.181 15 C -0.061 4.061 16 C -0.224 4.224 17 C 0.072 3.928 18 O -0.136 6.136 19 C -0.488 4.488 20 H 0.121 0.879 21 C -0.221 4.221 22 N -0.557 5.557 23 Si 0.838 3.162 24 H -0.174 1.174 25 H -0.195 1.195 26 H -0.194 1.194 27 C -0.263 4.263 28 C -0.063 4.063 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.042 0.958 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.040 0.960 42 H 0.244 0.756 43 H 0.242 0.758 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.164 0.836 47 H 0.133 0.867 48 H 0.082 0.918 49 H 0.138 0.862 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.708 8.421 -26.890 28.750 hybrid contribution 1.400 -0.300 0.725 1.605 sum -4.308 8.120 -26.166 27.733 Atomic orbital electron populations 1.22135 0.94760 1.02665 1.02085 1.20793 0.94166 0.96300 0.82968 0.91660 1.21806 0.94178 1.02244 0.96541 1.22126 0.96175 0.95966 0.92965 1.62044 1.11473 1.51690 1.02865 1.22509 1.02017 0.96342 0.92114 1.22416 0.86836 1.00066 1.03318 1.45184 1.71102 1.14156 1.08191 1.16128 0.78066 0.84652 0.81077 1.90882 1.59258 1.16334 1.85415 1.45251 1.70603 1.14369 1.08563 1.19680 1.00578 0.91855 0.79768 1.19491 0.93002 1.04080 1.01559 1.20877 1.00095 0.92717 0.92428 1.20452 0.91926 1.05874 1.04121 1.19990 0.94363 0.90136 0.88335 1.83947 1.25718 1.57176 1.46710 1.21865 0.79457 1.23519 1.23974 0.87904 1.26587 1.05992 0.94609 0.94863 1.70185 1.37798 1.24479 1.23201 0.84531 0.73720 0.78954 0.79032 1.17406 1.19496 1.19352 1.21239 0.99858 1.03501 1.01684 1.20932 0.95351 0.95065 0.94992 0.94439 0.90164 0.91377 0.89564 0.88992 0.95817 0.91136 0.95911 0.90762 0.90127 0.91413 0.90440 0.95968 0.75574 0.75788 0.91347 0.91615 0.83557 0.86675 0.91812 0.86227 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.48 71.98 0.68 -1.55 16 2 C 0.16 2.44 2.57 44.99 0.12 2.56 16 3 H 0.07 1.29 7.58 -2.39 -0.02 1.28 16 4 C -0.11 -1.14 4.68 30.59 0.14 -1.00 16 5 C 0.06 0.74 4.85 86.30 0.42 1.16 16 6 N -0.56 -7.32 5.02 -948.82 -4.76 -12.09 16 7 C 0.02 0.18 9.32 127.69 1.19 1.37 16 8 C 0.02 0.27 9.57 127.69 1.22 1.49 16 9 N -0.73 -12.05 4.53 -457.83 -2.08 -14.12 16 10 C 0.70 16.81 8.53 179.05 1.53 18.34 16 11 O -0.64 -20.66 16.01 -3.98 -0.06 -20.73 16 12 N -0.73 -15.93 5.55 -482.31 -2.68 -18.60 16 13 C 0.20 5.06 5.80 85.63 0.50 5.56 16 14 C -0.18 -5.17 5.25 -19.83 -0.10 -5.27 16 15 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 16 C -0.20 -8.19 9.99 22.39 0.22 -7.96 16 17 C 0.12 5.83 6.65 22.58 0.15 5.98 16 18 O -0.23 -13.40 9.76 -22.66 -0.22 -13.62 16 19 C -0.41 -23.34 9.49 67.92 0.64 -22.70 16 20 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 21 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 22 N -0.92 -55.40 13.67 21.61 0.30 -55.11 16 23 Si 1.02 41.91 29.55 68.60 2.03 43.93 16 24 H -0.25 -9.49 7.11 99.48 0.71 -8.79 16 25 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 26 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 27 C -0.24 -10.00 9.17 22.39 0.21 -9.79 16 28 C -0.04 -1.43 9.69 22.25 0.22 -1.22 16 29 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.09 0.76 6.55 -2.39 -0.02 0.75 16 34 H 0.02 0.37 8.12 -2.39 -0.02 0.35 16 35 H 0.07 1.02 7.67 -2.39 -0.02 1.01 16 36 H 0.02 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.07 0.64 8.12 -2.38 -0.02 0.63 16 38 H 0.08 0.65 6.47 -2.39 -0.02 0.64 16 39 H 0.07 0.85 8.12 -2.38 -0.02 0.83 16 40 H 0.08 0.80 8.12 -2.39 -0.02 0.78 16 41 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.41 4.82 8.62 -92.71 -0.80 4.02 16 43 H 0.41 7.48 8.48 -92.71 -0.79 6.70 16 44 H 0.07 1.71 8.08 -2.39 -0.02 1.70 16 45 H 0.07 1.67 8.08 -2.38 -0.02 1.65 16 46 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 47 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 48 H 0.27 15.04 8.31 -92.71 -0.77 14.26 16 49 H 0.12 5.04 5.64 -2.91 -0.02 5.02 16 50 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -73.39 411.83 -0.30 -73.69 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: -0.64 Total: 31.58 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 7.81 Total: -14.94 kcal Atomic # 7 Polarization: -90.70 SS G_CDS: -9.22 Total: -99.92 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -0.28 Total: -34.35 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Total: -73.39 -0.30 -73.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069820764.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.522 kcal (2) G-P(sol) polarization free energy of solvation -73.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds