Wall clock time and date at job start Tue Mar 31 2020 19:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46878 * 2 1 4 4 C 1.53005 * 109.46731 * 119.99579 * 2 1 3 5 5 C 1.50707 * 109.46629 * 185.00029 * 4 2 1 6 6 O 1.21276 * 120.00148 * 0.02562 * 5 4 2 7 7 N 1.34772 * 119.99718 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00143 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.47009 * 90.00100 * 8 7 5 10 10 H 1.08005 * 120.00089 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99852 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00344 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99811 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46854 * 89.99975 * 13 11 9 15 15 H 1.48500 * 109.46979 * 210.00051 * 13 11 9 16 16 H 1.48502 * 109.47266 * 329.99952 * 13 11 9 17 17 C 1.46502 * 119.99967 * 0.02562 * 7 5 4 18 18 C 1.52995 * 109.47064 * 90.00264 * 17 7 5 19 19 C 1.47202 * 109.47263 * 179.97438 * 18 17 7 20 20 N 6.74683 * 94.45690 * 133.71539 * 2 1 3 21 21 N 1.46499 * 109.47080 * 239.99265 * 2 1 3 22 22 C 1.34775 * 119.99299 * 85.00358 * 21 2 1 23 23 O 1.21276 * 120.00699 * 359.97438 * 22 21 2 24 24 C 1.50709 * 119.99599 * 179.97438 * 22 21 2 25 25 C 1.55238 * 110.58096 * 294.87565 * 24 22 21 26 26 C 1.54894 * 102.58338 * 203.33573 * 25 24 22 27 27 C 1.54266 * 104.31305 * 37.93170 * 26 25 24 28 28 C 1.53869 * 106.60031 * 336.32486 * 27 26 25 29 29 H 1.09000 * 109.47261 * 300.00416 * 1 2 3 30 30 H 1.08993 * 109.47204 * 60.00734 * 1 2 3 31 31 H 1.09006 * 109.47290 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47203 * 304.99695 * 4 2 1 33 33 H 1.08996 * 109.47084 * 65.00294 * 4 2 1 34 34 H 1.08996 * 109.47532 * 209.99759 * 8 7 5 35 35 H 1.09004 * 109.47013 * 330.00222 * 8 7 5 36 36 H 0.97002 * 120.00249 * 179.97438 * 12 11 9 37 37 H 1.09010 * 109.46667 * 209.99845 * 17 7 5 38 38 H 1.08994 * 109.47078 * 329.99497 * 17 7 5 39 39 H 1.08999 * 109.47449 * 299.99613 * 18 17 7 40 40 H 1.09004 * 109.47730 * 59.99616 * 18 17 7 41 41 H 0.96998 * 120.00025 * 264.99975 * 21 2 1 42 42 H 1.09006 * 110.43428 * 57.45967 * 24 22 21 43 43 H 1.08996 * 110.89448 * 85.05138 * 25 24 22 44 44 H 1.08993 * 110.76342 * 321.56803 * 25 24 22 45 45 H 1.09002 * 110.48891 * 279.18596 * 26 25 24 46 46 H 1.08998 * 110.48494 * 156.67683 * 26 25 24 47 47 H 1.09001 * 110.03084 * 95.60669 * 27 26 25 48 48 H 1.08996 * 110.03108 * 216.98559 * 27 26 25 49 49 H 1.08999 * 110.04012 * 119.28327 * 28 27 26 50 50 H 1.09006 * 110.02998 * 240.67078 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5419 -0.6148 1.3128 6 8 4.1449 -0.0204 0.4446 7 7 4.2148 -1.1795 2.3349 8 6 5.6749 -1.0766 2.3964 9 6 6.0593 0.1644 3.1601 10 1 5.2927 0.8116 3.5601 11 6 7.3897 0.4737 3.3482 12 7 8.3233 -0.3145 2.8617 13 14 7.8662 2.0124 4.2942 14 1 7.9944 1.6863 5.7373 15 1 9.1639 2.5244 3.7852 16 1 6.8191 3.0496 4.1122 17 6 3.4862 -1.8971 3.3840 18 6 3.3518 -3.3706 2.9948 19 6 2.6203 -4.0918 4.0491 20 7 2.0543 -4.6485 4.8617 21 7 2.0183 -0.6908 -1.1961 22 6 2.1470 -0.0184 -2.3570 23 8 1.8582 1.1582 -2.4117 24 6 2.6499 -0.7288 -3.5874 25 6 4.1205 -1.1856 -3.3910 26 6 4.6330 -1.3088 -4.8475 27 6 3.9719 -0.1265 -5.5856 28 6 2.7111 0.2423 -4.7844 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6053 -0.2616 2.1370 33 1 1.7516 -1.7714 1.2057 34 1 6.0801 -1.9537 2.9010 35 1 6.0781 -1.0205 1.3852 36 1 9.2592 -0.0967 2.9937 37 1 4.0319 -1.8180 4.3244 38 1 2.4946 -1.4603 3.5015 39 1 2.8062 -3.4498 2.0545 40 1 4.3435 -3.8074 2.8773 41 1 2.2490 -1.6319 -1.1524 42 1 2.0135 -1.5825 -3.8208 43 1 4.1637 -2.1493 -2.8835 44 1 4.6889 -0.4337 -2.8437 45 1 4.3169 -2.2561 -5.2843 46 1 5.7188 -1.2189 -4.8787 47 1 4.6551 0.7223 -5.6183 48 1 3.6983 -0.4243 -6.5978 49 1 2.7822 1.2700 -4.4282 50 1 1.8247 0.1239 -5.4078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171392628.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:10 Heat of formation + Delta-G solvation = -71.082872 kcal Electronic energy + Delta-G solvation = -29761.041380 eV Core-core repulsion = 25787.338356 eV Total energy + Delta-G solvation = -3973.703024 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.18339 -39.24707 -37.29200 -36.87685 -35.65835 -35.06491 -32.93615 -31.69935 -30.88232 -29.10323 -28.67080 -28.44382 -26.69321 -24.06209 -23.33130 -22.39331 -20.86413 -20.41443 -19.63057 -18.57962 -17.67531 -17.31841 -16.57243 -16.48105 -16.20370 -15.72859 -15.49305 -14.85450 -14.75740 -14.56336 -14.31649 -14.07735 -13.76440 -13.49044 -13.34128 -13.22554 -12.95211 -12.57531 -12.47346 -12.43202 -12.28054 -11.97549 -11.88743 -11.71210 -11.67474 -11.31992 -11.29072 -11.18327 -11.12551 -11.01531 -10.90867 -10.88191 -10.76117 -10.62465 -10.45815 -10.20925 -9.73189 -9.51646 -9.07270 -8.83896 -8.49466 -7.87349 -6.11306 -4.15769 2.67816 2.75856 2.87088 3.23814 3.27139 3.34573 3.35559 3.39774 3.59651 4.13221 4.39927 4.46395 4.55183 4.71959 4.77767 4.86848 4.96914 5.05957 5.16332 5.21648 5.24268 5.27502 5.36266 5.40800 5.47028 5.48589 5.51147 5.54569 5.58717 5.62295 5.67477 5.79348 5.83793 5.89713 6.02528 6.03119 6.08952 6.18026 6.23335 6.32219 6.33969 6.67811 6.89739 7.31968 7.39873 7.52269 7.68210 7.84830 8.14760 8.22926 8.45759 8.81535 8.96399 9.50192 10.96735 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007874 B = 0.003793 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3555.122146 B = 7381.204980 C = 9268.075645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.157 3.843 3 H 0.096 0.904 4 C -0.156 4.156 5 C 0.503 3.497 6 O -0.520 6.520 7 N -0.599 5.599 8 C 0.246 3.754 9 C -0.529 4.529 10 H 0.057 0.943 11 C 0.064 3.936 12 N -0.894 5.894 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.117 3.883 18 C -0.049 4.049 19 C 0.216 3.784 20 N -0.445 5.445 21 N -0.711 5.711 22 C 0.528 3.472 23 O -0.544 6.544 24 C -0.114 4.114 25 C -0.112 4.112 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.111 4.111 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.033 0.967 35 H 0.046 0.954 36 H 0.264 0.736 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.395 0.605 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.084 0.916 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.001 -6.469 -10.688 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.052 3.948 3 H 0.114 0.886 4 C -0.196 4.196 5 C 0.289 3.711 6 O -0.395 6.395 7 N -0.331 5.331 8 C 0.128 3.872 9 C -0.567 4.567 10 H 0.076 0.924 11 C -0.139 4.139 12 N -0.533 5.533 13 Si 0.723 3.277 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.009 4.009 18 C -0.091 4.091 19 C -0.102 4.102 20 N -0.122 5.122 21 N -0.361 5.361 22 C 0.314 3.686 23 O -0.421 6.421 24 C -0.135 4.135 25 C -0.149 4.149 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.149 4.149 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.134 0.866 41 H 0.229 0.771 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.102 0.898 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.500 -6.124 -9.994 17.878 hybrid contribution 0.732 0.443 0.496 0.989 sum -12.768 -5.682 -9.498 16.897 Atomic orbital electron populations 1.22186 0.95273 1.01883 1.02651 1.20644 0.92837 0.98427 0.82857 0.88592 1.22170 0.95124 1.02598 0.99758 1.20286 0.88829 0.79784 0.82234 1.90736 1.69773 1.40718 1.38254 1.48235 1.09972 1.52478 1.22385 1.19314 0.72108 0.97008 0.98815 1.21411 0.91931 1.08609 1.34780 0.92440 1.24899 0.96353 0.96856 0.95772 1.69910 1.00428 1.37620 1.45296 0.86539 0.78068 0.83315 0.79776 1.20656 1.21097 1.19868 1.21296 0.98122 0.88119 0.93391 1.19898 1.00511 0.95756 0.92934 1.29116 0.93331 0.93523 0.94234 1.81218 1.10449 1.09857 1.10685 1.45803 1.67316 1.13530 1.09460 1.20375 0.76610 0.87103 0.84466 1.90653 1.50267 1.16037 1.85104 1.22212 0.98435 0.99209 0.93637 1.22534 0.93265 1.01946 0.97203 1.22349 1.00436 0.98230 0.95107 1.22142 0.96985 0.98445 0.98643 1.22054 0.97641 1.00570 0.94661 0.91613 0.91968 0.92596 0.87874 0.89156 0.94917 0.93634 0.92684 0.88861 0.90631 0.87703 0.86553 0.77127 0.88776 0.91009 0.90069 0.91703 0.91350 0.91688 0.92015 0.89763 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.48 37.16 0.35 -1.23 16 2 C 0.16 1.95 2.13 -67.93 -0.14 1.81 16 3 H 0.10 1.58 7.39 -51.93 -0.38 1.19 16 4 C -0.16 -1.72 3.80 -27.88 -0.11 -1.83 16 5 C 0.50 8.36 7.53 -10.98 -0.08 8.28 16 6 O -0.52 -11.17 14.93 5.56 0.08 -11.09 16 7 N -0.60 -10.10 2.46 -175.05 -0.43 -10.53 16 8 C 0.25 5.60 5.16 -5.19 -0.03 5.57 16 9 C -0.53 -13.86 9.39 -34.44 -0.32 -14.18 16 10 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 13 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 C 0.12 1.42 5.17 -4.04 -0.02 1.39 16 18 C -0.05 -0.45 6.03 -29.52 -0.18 -0.63 16 19 C 0.22 2.39 15.43 -20.76 -0.32 2.07 16 20 N -0.44 -6.16 18.54 42.15 0.78 -5.38 16 21 N -0.71 -8.60 4.21 -53.80 -0.23 -8.83 16 22 C 0.53 7.45 7.10 -10.98 -0.08 7.37 16 23 O -0.54 -9.77 15.09 5.56 0.08 -9.69 16 24 C -0.11 -1.25 3.25 -89.92 -0.29 -1.55 16 25 C -0.11 -1.26 6.34 -24.55 -0.16 -1.42 16 26 C -0.12 -1.19 6.82 -25.07 -0.17 -1.36 16 27 C -0.12 -1.21 6.80 -25.62 -0.17 -1.39 16 28 C -0.11 -1.25 6.18 -25.62 -0.16 -1.41 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.99 7.40 -51.93 -0.38 0.61 16 33 H 0.09 0.70 7.19 -51.93 -0.37 0.32 16 34 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.05 1.19 7.42 -51.93 -0.39 0.81 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.09 1.25 8.07 -51.92 -0.42 0.83 16 38 H 0.08 0.74 6.44 -51.93 -0.33 0.40 16 39 H 0.10 0.70 7.22 -51.93 -0.38 0.32 16 40 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.40 3.83 8.60 -40.82 -0.35 3.48 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.08 1.18 8.06 -51.93 -0.42 0.77 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.08 1.16 6.85 -51.93 -0.36 0.81 16 50 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 413.85 15.07 6.24 6.24 Total: -1.00 -34.49 413.85 -8.13 -42.62 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -8.40 Total: 1.85 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -1.98 Total: 3.13 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.86 Total: -49.20 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.17 Total: -20.78 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.49 -8.13 -42.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171392628.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.466 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds