Wall clock time and date at job start Tue Mar 31 2020 19:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46878 * 2 1 4 4 C 1.53005 * 109.46731 * 119.99579 * 2 1 3 5 5 C 1.50707 * 109.46629 * 185.00029 * 4 2 1 6 6 O 1.21276 * 120.00148 * 0.02562 * 5 4 2 7 7 N 1.34772 * 119.99718 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00143 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.47009 * 90.00100 * 8 7 5 10 10 H 1.08005 * 120.00089 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99852 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00344 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99811 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46854 * 89.99975 * 13 11 9 15 15 H 1.48500 * 109.46979 * 210.00051 * 13 11 9 16 16 H 1.48502 * 109.47266 * 329.99952 * 13 11 9 17 17 C 1.46502 * 119.99967 * 0.02562 * 7 5 4 18 18 C 1.52995 * 109.47064 * 90.00264 * 17 7 5 19 19 C 1.47202 * 109.47263 * 179.97438 * 18 17 7 20 20 N 6.74683 * 94.45690 * 133.71539 * 2 1 3 21 21 N 1.46499 * 109.47080 * 239.99265 * 2 1 3 22 22 C 1.34775 * 119.99299 * 85.00358 * 21 2 1 23 23 O 1.21276 * 120.00699 * 359.97438 * 22 21 2 24 24 C 1.50709 * 119.99599 * 179.97438 * 22 21 2 25 25 C 1.55238 * 110.58096 * 294.87565 * 24 22 21 26 26 C 1.54894 * 102.58338 * 203.33573 * 25 24 22 27 27 C 1.54266 * 104.31305 * 37.93170 * 26 25 24 28 28 C 1.53869 * 106.60031 * 336.32486 * 27 26 25 29 29 H 1.09000 * 109.47261 * 300.00416 * 1 2 3 30 30 H 1.08993 * 109.47204 * 60.00734 * 1 2 3 31 31 H 1.09006 * 109.47290 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47203 * 304.99695 * 4 2 1 33 33 H 1.08996 * 109.47084 * 65.00294 * 4 2 1 34 34 H 1.08996 * 109.47532 * 209.99759 * 8 7 5 35 35 H 1.09004 * 109.47013 * 330.00222 * 8 7 5 36 36 H 0.97002 * 120.00249 * 179.97438 * 12 11 9 37 37 H 1.09010 * 109.46667 * 209.99845 * 17 7 5 38 38 H 1.08994 * 109.47078 * 329.99497 * 17 7 5 39 39 H 1.08999 * 109.47449 * 299.99613 * 18 17 7 40 40 H 1.09004 * 109.47730 * 59.99616 * 18 17 7 41 41 H 0.96998 * 120.00025 * 264.99975 * 21 2 1 42 42 H 1.09006 * 110.43428 * 57.45967 * 24 22 21 43 43 H 1.08996 * 110.89448 * 85.05138 * 25 24 22 44 44 H 1.08993 * 110.76342 * 321.56803 * 25 24 22 45 45 H 1.09002 * 110.48891 * 279.18596 * 26 25 24 46 46 H 1.08998 * 110.48494 * 156.67683 * 26 25 24 47 47 H 1.09001 * 110.03084 * 95.60669 * 27 26 25 48 48 H 1.08996 * 110.03108 * 216.98559 * 27 26 25 49 49 H 1.08999 * 110.04012 * 119.28327 * 28 27 26 50 50 H 1.09006 * 110.02998 * 240.67078 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5419 -0.6148 1.3128 6 8 4.1449 -0.0204 0.4446 7 7 4.2148 -1.1795 2.3349 8 6 5.6749 -1.0766 2.3964 9 6 6.0593 0.1644 3.1601 10 1 5.2927 0.8116 3.5601 11 6 7.3897 0.4737 3.3482 12 7 8.3233 -0.3145 2.8617 13 14 7.8662 2.0124 4.2942 14 1 7.9944 1.6863 5.7373 15 1 9.1639 2.5244 3.7852 16 1 6.8191 3.0496 4.1122 17 6 3.4862 -1.8971 3.3840 18 6 3.3518 -3.3706 2.9948 19 6 2.6203 -4.0918 4.0491 20 7 2.0543 -4.6485 4.8617 21 7 2.0183 -0.6908 -1.1961 22 6 2.1470 -0.0184 -2.3570 23 8 1.8582 1.1582 -2.4117 24 6 2.6499 -0.7288 -3.5874 25 6 4.1205 -1.1856 -3.3910 26 6 4.6330 -1.3088 -4.8475 27 6 3.9719 -0.1265 -5.5856 28 6 2.7111 0.2423 -4.7844 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6053 -0.2616 2.1370 33 1 1.7516 -1.7714 1.2057 34 1 6.0801 -1.9537 2.9010 35 1 6.0781 -1.0205 1.3852 36 1 9.2592 -0.0967 2.9937 37 1 4.0319 -1.8180 4.3244 38 1 2.4946 -1.4603 3.5015 39 1 2.8062 -3.4498 2.0545 40 1 4.3435 -3.8074 2.8773 41 1 2.2490 -1.6319 -1.1524 42 1 2.0135 -1.5825 -3.8208 43 1 4.1637 -2.1493 -2.8835 44 1 4.6889 -0.4337 -2.8437 45 1 4.3169 -2.2561 -5.2843 46 1 5.7188 -1.2189 -4.8787 47 1 4.6551 0.7223 -5.6183 48 1 3.6983 -0.4243 -6.5978 49 1 2.7822 1.2700 -4.4282 50 1 1.8247 0.1239 -5.4078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171392628.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:10 Heat of formation + Delta-G solvation = -93.236826 kcal Electronic energy + Delta-G solvation = -29762.002047 eV Core-core repulsion = 25787.338356 eV Total energy + Delta-G solvation = -3974.663692 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.29588 -40.49408 -38.23092 -37.89121 -36.84212 -36.32670 -34.84735 -32.75626 -32.08896 -30.18604 -29.63798 -29.44295 -28.16362 -25.26535 -24.77976 -23.59160 -21.86087 -21.30599 -20.62652 -19.83466 -18.77831 -18.35929 -18.27739 -17.78506 -17.26575 -16.95618 -16.58453 -16.19602 -15.82360 -15.79848 -15.58405 -15.17901 -14.86642 -14.44550 -14.38092 -14.26513 -14.24697 -13.88926 -13.61492 -13.48742 -13.33325 -13.18455 -12.98517 -12.93250 -12.77648 -12.68099 -12.66987 -12.49107 -12.17479 -12.13578 -12.03841 -11.95036 -11.83342 -11.77619 -11.66454 -11.65420 -11.27852 -10.63486 -10.58035 -10.46254 -9.91510 -9.39743 -8.18097 -6.29516 1.37013 1.40217 1.48665 1.75294 1.79143 1.90162 1.98928 2.34140 2.39031 2.46288 3.12560 3.19864 3.58803 3.67873 3.78051 3.81313 3.89988 4.11679 4.18410 4.30008 4.31053 4.48787 4.50255 4.56715 4.59724 4.63000 4.64484 4.73984 4.76650 4.81527 4.87996 4.91415 4.99369 5.10592 5.11433 5.16729 5.19137 5.25560 5.29987 5.36606 5.39905 5.41121 5.50399 5.63804 5.70491 5.92179 6.15283 6.66800 6.70246 6.78977 6.88629 7.36727 7.44085 7.62168 8.87976 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007874 B = 0.003793 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3555.122146 B = 7381.204980 C = 9268.075645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.155 3.845 3 H 0.044 0.956 4 C -0.140 4.140 5 C 0.497 3.503 6 O -0.579 6.579 7 N -0.599 5.599 8 C 0.263 3.737 9 C -0.539 4.539 10 H 0.050 0.950 11 C 0.013 3.987 12 N -0.924 5.924 13 Si 0.952 3.048 14 H -0.266 1.266 15 H -0.286 1.286 16 H -0.277 1.277 17 C 0.112 3.888 18 C -0.037 4.037 19 C 0.246 3.754 20 N -0.492 5.492 21 N -0.701 5.701 22 C 0.517 3.483 23 O -0.594 6.594 24 C -0.106 4.106 25 C -0.111 4.111 26 C -0.119 4.119 27 C -0.123 4.123 28 C -0.113 4.113 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.129 0.871 33 H 0.142 0.858 34 H 0.032 0.968 35 H 0.003 0.997 36 H 0.264 0.736 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.144 0.856 40 H 0.117 0.883 41 H 0.410 0.590 42 H 0.132 0.868 43 H 0.088 0.912 44 H 0.034 0.966 45 H 0.093 0.907 46 H 0.063 0.937 47 H 0.050 0.950 48 H 0.086 0.914 49 H 0.046 0.954 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.263 -8.666 -10.588 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.049 3.951 3 H 0.062 0.938 4 C -0.179 4.179 5 C 0.286 3.714 6 O -0.458 6.458 7 N -0.330 5.330 8 C 0.141 3.859 9 C -0.578 4.578 10 H 0.069 0.931 11 C -0.186 4.186 12 N -0.565 5.565 13 Si 0.777 3.223 14 H -0.191 1.191 15 H -0.211 1.211 16 H -0.202 1.202 17 C -0.013 4.013 18 C -0.078 4.078 19 C -0.071 4.071 20 N -0.170 5.170 21 N -0.352 5.352 22 C 0.305 3.695 23 O -0.475 6.475 24 C -0.127 4.127 25 C -0.149 4.149 26 C -0.156 4.156 27 C -0.160 4.160 28 C -0.151 4.151 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.147 0.853 33 H 0.159 0.841 34 H 0.050 0.950 35 H 0.021 0.979 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.128 0.872 39 H 0.162 0.838 40 H 0.135 0.865 41 H 0.246 0.754 42 H 0.150 0.850 43 H 0.107 0.893 44 H 0.053 0.947 45 H 0.111 0.889 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.104 0.896 49 H 0.065 0.935 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.794 -8.378 -9.843 20.409 hybrid contribution 1.463 1.167 0.476 1.931 sum -14.331 -7.211 -9.368 18.578 Atomic orbital electron populations 1.22082 0.92566 1.03769 1.02393 1.20633 0.94748 0.96081 0.83609 0.93755 1.22193 0.90010 1.05789 0.99943 1.21287 0.91117 0.78139 0.80894 1.90732 1.71502 1.43091 1.40479 1.48087 1.07887 1.53144 1.23845 1.18716 0.76005 0.95557 0.95578 1.21783 0.91880 1.09617 1.34484 0.93144 1.25657 0.96645 0.99495 0.96815 1.70007 1.00632 1.39175 1.46639 0.85655 0.77347 0.79960 0.79295 1.19084 1.21136 1.20234 1.21527 0.98791 0.89770 0.91185 1.19852 1.01061 0.93116 0.93739 1.29200 0.92087 0.92461 0.93370 1.81269 1.12314 1.11380 1.12083 1.45770 1.66367 1.14117 1.08897 1.21002 0.75955 0.86726 0.85855 1.90628 1.52573 1.18252 1.86005 1.22277 0.98551 0.99916 0.92002 1.22480 0.92983 1.01212 0.98192 1.22361 1.00158 0.99375 0.93707 1.22147 0.95993 0.98168 0.99736 1.22051 0.99209 0.98634 0.95245 0.90118 0.94096 0.89472 0.85282 0.84069 0.94978 0.97890 0.92672 0.90454 0.87180 0.83844 0.86488 0.75428 0.84979 0.89308 0.94709 0.88893 0.91817 0.93099 0.89577 0.93468 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.48 71.98 0.68 -1.86 16 2 C 0.15 3.66 2.13 44.99 0.10 3.75 16 3 H 0.04 1.53 7.39 -2.39 -0.02 1.51 16 4 C -0.14 -2.61 3.80 29.85 0.11 -2.50 16 5 C 0.50 16.09 7.53 87.66 0.66 16.75 16 6 O -0.58 -25.91 14.93 -3.02 -0.05 -25.95 16 7 N -0.60 -19.56 2.46 -826.14 -2.03 -21.59 16 8 C 0.26 12.22 5.16 85.63 0.44 12.67 16 9 C -0.54 -28.83 9.39 25.60 0.24 -28.59 16 10 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 11 C 0.01 0.72 5.46 84.65 0.46 1.18 16 12 N -0.92 -53.38 13.29 21.45 0.28 -53.09 16 13 Si 0.95 44.00 29.54 68.60 2.03 46.02 16 14 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 15 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 17 C 0.11 2.37 5.17 86.38 0.45 2.81 16 18 C -0.04 -0.52 6.03 28.79 0.17 -0.35 16 19 C 0.25 4.61 15.43 89.44 1.38 5.99 16 20 N -0.49 -12.46 18.54 20.01 0.37 -12.09 16 21 N -0.70 -16.31 4.21 -442.53 -1.86 -18.17 16 22 C 0.52 14.90 7.10 87.66 0.62 15.52 16 23 O -0.59 -22.79 15.09 -3.02 -0.05 -22.84 16 24 C -0.11 -2.27 3.25 -10.34 -0.03 -2.30 16 25 C -0.11 -2.49 6.34 32.01 0.20 -2.29 16 26 C -0.12 -2.13 6.82 31.67 0.22 -1.91 16 27 C -0.12 -2.32 6.80 31.32 0.21 -2.10 16 28 C -0.11 -2.55 6.18 31.32 0.19 -2.35 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.13 1.87 7.40 -2.39 -0.02 1.85 16 33 H 0.14 1.26 7.19 -2.39 -0.02 1.24 16 34 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 35 H 0.00 0.16 7.42 -2.39 -0.02 0.15 16 36 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 37 H 0.08 1.93 8.07 -2.38 -0.02 1.91 16 38 H 0.11 1.61 6.44 -2.39 -0.02 1.60 16 39 H 0.14 1.04 7.22 -2.39 -0.02 1.02 16 40 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.41 6.90 8.60 -92.71 -0.80 6.10 16 42 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.03 1.09 8.06 -2.39 -0.02 1.07 16 45 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.05 1.41 6.85 -2.39 -0.02 1.39 16 50 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -83.70 413.85 4.95 -78.74 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.14 Total: 14.54 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 6.11 Total: 14.42 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -3.24 Total: -104.94 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -0.09 Total: -48.79 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -83.70 4.95 -78.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171392628.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.492 kcal (2) G-P(sol) polarization free energy of solvation -83.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds