Wall clock time and date at job start Tue Mar 31 2020 19:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 C 1.50699 * 109.46636 * 174.99847 * 4 2 1 6 6 O 1.21280 * 120.00199 * 0.02562 * 5 4 2 7 7 N 1.34784 * 119.99691 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99759 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.46987 * 90.00527 * 8 7 5 10 10 H 1.08003 * 120.00123 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00195 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00152 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99855 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47178 * 89.99891 * 13 11 9 15 15 H 1.48500 * 109.46782 * 209.99635 * 13 11 9 16 16 H 1.48494 * 109.47189 * 329.99526 * 13 11 9 17 17 C 1.46494 * 120.00111 * 0.02562 * 7 5 4 18 18 C 1.53002 * 109.47621 * 89.99397 * 17 7 5 19 19 C 1.47202 * 109.47278 * 180.02562 * 18 17 7 20 20 N 6.74687 * 92.43954 * 250.93632 * 2 1 3 21 21 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 22 22 C 1.34784 * 119.99635 * 274.99773 * 21 2 1 23 23 O 1.21279 * 119.99925 * 359.97438 * 22 21 2 24 24 C 1.50700 * 119.99961 * 180.02562 * 22 21 2 25 25 C 1.54274 * 110.03139 * 297.90611 * 24 22 21 26 26 C 1.54960 * 104.15934 * 217.13316 * 25 24 22 27 27 C 1.54890 * 102.77769 * 37.89262 * 26 25 24 28 28 C 1.53870 * 110.03530 * 180.69114 * 24 22 21 29 29 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 30 30 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 31 31 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47373 * 295.00066 * 4 2 1 33 33 H 1.09001 * 109.47302 * 55.00561 * 4 2 1 34 34 H 1.09003 * 109.47336 * 210.00426 * 8 7 5 35 35 H 1.09003 * 109.47462 * 330.01038 * 8 7 5 36 36 H 0.96997 * 120.00533 * 180.02562 * 12 11 9 37 37 H 1.09000 * 109.47057 * 209.99411 * 17 7 5 38 38 H 1.09001 * 109.47168 * 329.99025 * 17 7 5 39 39 H 1.09000 * 109.46916 * 300.00101 * 18 17 7 40 40 H 1.08999 * 109.46675 * 59.99816 * 18 17 7 41 41 H 0.96995 * 120.00292 * 95.27206 * 21 2 1 42 42 H 1.08997 * 110.01573 * 59.29300 * 24 22 21 43 43 H 1.08999 * 110.48561 * 335.78565 * 25 24 22 44 44 H 1.09004 * 110.48438 * 98.42226 * 25 24 22 45 45 H 1.08994 * 110.72279 * 279.57290 * 26 25 24 46 46 H 1.09007 * 110.91921 * 156.29317 * 26 25 24 47 47 H 1.09000 * 110.48895 * 203.40575 * 27 26 25 48 48 H 1.08995 * 110.60291 * 80.81173 * 27 26 25 49 49 H 1.08993 * 110.03088 * 238.57172 * 28 24 22 50 50 H 1.09007 * 110.02608 * 359.97438 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 8 4.1450 -0.0211 -0.4441 7 7 4.2149 -1.1805 -2.3344 8 6 5.6748 -1.0766 -2.3965 9 6 6.2928 -2.2457 -1.6736 10 1 5.6611 -2.9917 -1.2143 11 6 7.6645 -2.3635 -1.5995 12 7 8.2037 -3.3835 -0.9682 13 14 8.7570 -1.0737 -2.3944 14 1 9.0453 0.0035 -1.4137 15 1 10.0306 -1.7026 -2.8275 16 1 8.0637 -0.4966 -3.5740 17 6 3.4864 -1.8982 -3.3834 18 6 3.1146 -0.9247 -4.5036 19 6 2.3820 -1.6458 -5.5573 20 7 1.8172 -2.2017 -6.3711 21 7 2.0184 -0.6907 1.1961 22 6 2.1471 -0.0183 2.3571 23 8 1.8591 1.1585 2.4114 24 6 2.6500 -0.7286 3.5874 25 6 1.6794 -1.8628 3.9766 26 6 1.6764 -1.8442 5.5261 27 6 1.7424 -0.3311 5.8506 28 6 2.6905 0.2447 4.7785 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7715 -1.2057 33 1 1.6054 -0.2617 -2.1370 34 1 5.9957 -1.0828 -3.4382 35 1 5.9935 -0.1476 -1.9236 36 1 9.1688 -3.4663 -0.9157 37 1 4.1165 -2.6915 -3.7857 38 1 2.5791 -2.3326 -2.9635 39 1 2.4845 -0.1314 -4.1014 40 1 4.0219 -0.4904 -4.9235 41 1 2.2528 -1.6308 1.1515 42 1 3.6444 -1.1350 3.4033 43 1 0.6804 -1.6592 3.5908 44 1 2.0443 -2.8210 3.6064 45 1 2.5509 -2.3623 5.9197 46 1 0.7595 -2.2839 5.9189 47 1 2.1530 -0.1724 6.8478 48 1 0.7545 0.1220 5.7693 49 1 3.7044 0.3100 5.1729 50 1 2.3468 1.2310 4.4665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171392630.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:14 Heat of formation + Delta-G solvation = -66.242147 kcal Electronic energy + Delta-G solvation = -29659.251914 eV Core-core repulsion = 25685.758799 eV Total energy + Delta-G solvation = -3973.493115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.23590 -39.36361 -37.29708 -36.91593 -35.70172 -35.14324 -32.88411 -31.71681 -31.06562 -29.21895 -28.72917 -28.58191 -27.10160 -24.12416 -23.15477 -22.18749 -20.93323 -20.54253 -19.49268 -18.59569 -17.81342 -17.29897 -16.90141 -16.64243 -16.29117 -15.70202 -15.60197 -14.84724 -14.73054 -14.62990 -14.51524 -13.96767 -13.77899 -13.56271 -13.45731 -13.21719 -12.92428 -12.65652 -12.57675 -12.55233 -12.33271 -12.25440 -11.86906 -11.72492 -11.67008 -11.62570 -11.31217 -11.19460 -11.14731 -11.11175 -11.02389 -10.84121 -10.80222 -10.59345 -10.51309 -10.25808 -9.64763 -9.49089 -9.19053 -8.83927 -8.66903 -7.95782 -6.17017 -4.16616 2.63025 2.71708 2.90988 3.16124 3.23100 3.28361 3.31681 3.38413 3.48543 4.05531 4.32118 4.44928 4.54992 4.66488 4.76537 4.78373 4.90324 5.00075 5.13585 5.16834 5.17650 5.30979 5.36837 5.38787 5.40497 5.46618 5.47621 5.54025 5.58751 5.61774 5.64513 5.70589 5.76681 5.84053 5.95864 5.98620 6.06288 6.14371 6.19299 6.25120 6.35774 6.54811 6.70877 6.82832 7.14353 7.47723 7.51117 7.71820 8.03360 8.36408 8.48293 8.78722 8.86260 9.42995 10.96089 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008656 B = 0.003726 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3234.139820 B = 7513.123915 C = 9838.812099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.158 3.842 3 H 0.095 0.905 4 C -0.156 4.156 5 C 0.505 3.495 6 O -0.520 6.520 7 N -0.594 5.594 8 C 0.215 3.785 9 C -0.531 4.531 10 H 0.075 0.925 11 C 0.074 3.926 12 N -0.896 5.896 13 Si 0.874 3.126 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.265 1.265 17 C 0.117 3.883 18 C -0.051 4.051 19 C 0.215 3.785 20 N -0.442 5.442 21 N -0.711 5.711 22 C 0.531 3.469 23 O -0.547 6.547 24 C -0.116 4.116 25 C -0.114 4.114 26 C -0.124 4.124 27 C -0.123 4.123 28 C -0.119 4.119 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.031 0.969 35 H 0.039 0.961 36 H 0.265 0.735 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.399 0.601 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.066 0.934 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.301 3.740 4.553 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.053 3.947 3 H 0.113 0.887 4 C -0.196 4.196 5 C 0.291 3.709 6 O -0.395 6.395 7 N -0.326 5.326 8 C 0.094 3.906 9 C -0.569 4.569 10 H 0.093 0.907 11 C -0.129 4.129 12 N -0.534 5.534 13 Si 0.701 3.299 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.190 1.190 17 C -0.009 4.009 18 C -0.093 4.093 19 C -0.103 4.103 20 N -0.119 5.119 21 N -0.361 5.361 22 C 0.317 3.683 23 O -0.424 6.424 24 C -0.137 4.137 25 C -0.152 4.152 26 C -0.161 4.161 27 C -0.161 4.161 28 C -0.156 4.156 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.133 0.867 41 H 0.233 0.767 42 H 0.120 0.880 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.085 0.915 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.817 4.008 3.885 16.773 hybrid contribution 1.217 0.141 -0.318 1.266 sum -14.599 4.149 3.567 15.591 Atomic orbital electron populations 1.22188 0.95212 1.02024 1.02584 1.20629 0.92917 0.98181 0.82992 0.88732 1.22166 0.94566 1.03130 0.99745 1.20332 0.88997 0.79557 0.81969 1.90741 1.69869 1.41744 1.37151 1.47906 1.08744 1.53390 1.22521 1.19708 0.74918 0.98710 0.97216 1.21276 0.92117 1.08143 1.35369 0.90728 1.24844 0.97882 0.95342 0.94792 1.69882 1.11517 1.29745 1.42230 0.86885 0.80518 0.82184 0.80293 1.19917 1.21112 1.19012 1.21323 0.98051 0.93926 0.87588 1.19902 1.00042 0.98158 0.91167 1.29053 0.93395 0.93737 0.94088 1.81218 1.10386 1.09376 1.10960 1.45817 1.67128 1.13886 1.09284 1.20378 0.76488 0.86953 0.84447 1.90616 1.50775 1.16052 1.84992 1.21954 1.01206 0.96917 0.93670 1.22354 0.98910 0.97483 0.96425 1.22507 1.01789 0.96662 0.95176 1.22355 0.99796 0.95352 0.98567 1.22147 1.00002 1.00086 0.93403 0.91919 0.91670 0.92490 0.88646 0.87991 0.95126 0.94335 0.92502 0.88612 0.90277 0.87466 0.86705 0.76737 0.88026 0.91355 0.90818 0.91205 0.91567 0.91724 0.91755 0.91507 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 2 C 0.16 1.93 2.14 -67.93 -0.15 1.78 16 3 H 0.09 1.44 7.39 -51.93 -0.38 1.06 16 4 C -0.16 -1.68 3.79 -27.88 -0.11 -1.78 16 5 C 0.51 8.24 7.53 -10.98 -0.08 8.15 16 6 O -0.52 -11.05 14.93 5.56 0.08 -10.96 16 7 N -0.59 -9.71 2.46 -175.06 -0.43 -10.14 16 8 C 0.21 4.56 4.23 -5.19 -0.02 4.53 16 9 C -0.53 -13.85 9.94 -34.44 -0.34 -14.19 16 10 H 0.07 2.13 8.06 -52.48 -0.42 1.71 16 11 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 12 N -0.90 -26.24 13.96 55.43 0.77 -25.47 16 13 Si 0.87 20.36 27.47 -169.99 -4.67 15.69 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.27 -5.70 6.54 56.52 0.37 -5.33 16 17 C 0.12 1.36 5.17 -4.04 -0.02 1.34 16 18 C -0.05 -0.45 6.03 -29.52 -0.18 -0.63 16 19 C 0.22 2.32 15.43 -20.76 -0.32 2.00 16 20 N -0.44 -6.03 18.54 42.15 0.78 -5.25 16 21 N -0.71 -9.36 4.16 -53.80 -0.22 -9.59 16 22 C 0.53 7.92 6.97 -10.98 -0.08 7.84 16 23 O -0.55 -9.86 14.87 5.56 0.08 -9.78 16 24 C -0.12 -1.45 3.29 -90.65 -0.30 -1.75 16 25 C -0.11 -1.11 6.30 -25.03 -0.16 -1.27 16 26 C -0.12 -1.10 6.91 -24.70 -0.17 -1.27 16 27 C -0.12 -1.19 6.83 -25.07 -0.17 -1.37 16 28 C -0.12 -1.43 6.40 -25.61 -0.16 -1.60 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.85 7.40 -51.93 -0.38 0.47 16 33 H 0.10 0.79 7.19 -51.93 -0.37 0.41 16 34 H 0.03 0.61 7.13 -51.93 -0.37 0.24 16 35 H 0.04 0.90 6.85 -51.93 -0.36 0.54 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.10 1.24 8.07 -51.93 -0.42 0.82 16 38 H 0.08 0.73 6.44 -51.93 -0.33 0.40 16 39 H 0.11 0.71 7.22 -51.93 -0.38 0.34 16 40 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.40 4.75 8.59 -40.82 -0.35 4.40 16 42 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.07 0.66 7.85 -51.93 -0.41 0.25 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.09 1.26 6.39 -51.92 -0.33 0.92 16 LS Contribution 409.49 15.07 6.17 6.17 Total: -1.00 -35.07 409.49 -7.76 -42.83 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -8.33 Total: 3.94 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.00 Total: 2.56 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.90 Total: -50.45 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.17 Total: -20.74 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.07 -7.76 -42.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171392630.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.411 kcal (2) G-P(sol) polarization free energy of solvation -35.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds