Wall clock time and date at job start Tue Mar 31 2020 19:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 C 1.50699 * 109.46636 * 174.99847 * 4 2 1 6 6 O 1.21280 * 120.00199 * 0.02562 * 5 4 2 7 7 N 1.34784 * 119.99691 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99759 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.46987 * 90.00527 * 8 7 5 10 10 H 1.08003 * 120.00123 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00195 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00152 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99855 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47178 * 89.99891 * 13 11 9 15 15 H 1.48500 * 109.46782 * 209.99635 * 13 11 9 16 16 H 1.48494 * 109.47189 * 329.99526 * 13 11 9 17 17 C 1.46494 * 120.00111 * 0.02562 * 7 5 4 18 18 C 1.53002 * 109.47621 * 89.99397 * 17 7 5 19 19 C 1.47202 * 109.47278 * 180.02562 * 18 17 7 20 20 N 6.74687 * 92.43954 * 250.93632 * 2 1 3 21 21 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 22 22 C 1.34784 * 119.99635 * 274.99773 * 21 2 1 23 23 O 1.21279 * 119.99925 * 359.97438 * 22 21 2 24 24 C 1.50700 * 119.99961 * 180.02562 * 22 21 2 25 25 C 1.54274 * 110.03139 * 297.90611 * 24 22 21 26 26 C 1.54960 * 104.15934 * 217.13316 * 25 24 22 27 27 C 1.54890 * 102.77769 * 37.89262 * 26 25 24 28 28 C 1.53870 * 110.03530 * 180.69114 * 24 22 21 29 29 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 30 30 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 31 31 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47373 * 295.00066 * 4 2 1 33 33 H 1.09001 * 109.47302 * 55.00561 * 4 2 1 34 34 H 1.09003 * 109.47336 * 210.00426 * 8 7 5 35 35 H 1.09003 * 109.47462 * 330.01038 * 8 7 5 36 36 H 0.96997 * 120.00533 * 180.02562 * 12 11 9 37 37 H 1.09000 * 109.47057 * 209.99411 * 17 7 5 38 38 H 1.09001 * 109.47168 * 329.99025 * 17 7 5 39 39 H 1.09000 * 109.46916 * 300.00101 * 18 17 7 40 40 H 1.08999 * 109.46675 * 59.99816 * 18 17 7 41 41 H 0.96995 * 120.00292 * 95.27206 * 21 2 1 42 42 H 1.08997 * 110.01573 * 59.29300 * 24 22 21 43 43 H 1.08999 * 110.48561 * 335.78565 * 25 24 22 44 44 H 1.09004 * 110.48438 * 98.42226 * 25 24 22 45 45 H 1.08994 * 110.72279 * 279.57290 * 26 25 24 46 46 H 1.09007 * 110.91921 * 156.29317 * 26 25 24 47 47 H 1.09000 * 110.48895 * 203.40575 * 27 26 25 48 48 H 1.08995 * 110.60291 * 80.81173 * 27 26 25 49 49 H 1.08993 * 110.03088 * 238.57172 * 28 24 22 50 50 H 1.09007 * 110.02608 * 359.97438 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 8 4.1450 -0.0211 -0.4441 7 7 4.2149 -1.1805 -2.3344 8 6 5.6748 -1.0766 -2.3965 9 6 6.2928 -2.2457 -1.6736 10 1 5.6611 -2.9917 -1.2143 11 6 7.6645 -2.3635 -1.5995 12 7 8.2037 -3.3835 -0.9682 13 14 8.7570 -1.0737 -2.3944 14 1 9.0453 0.0035 -1.4137 15 1 10.0306 -1.7026 -2.8275 16 1 8.0637 -0.4966 -3.5740 17 6 3.4864 -1.8982 -3.3834 18 6 3.1146 -0.9247 -4.5036 19 6 2.3820 -1.6458 -5.5573 20 7 1.8172 -2.2017 -6.3711 21 7 2.0184 -0.6907 1.1961 22 6 2.1471 -0.0183 2.3571 23 8 1.8591 1.1585 2.4114 24 6 2.6500 -0.7286 3.5874 25 6 1.6794 -1.8628 3.9766 26 6 1.6764 -1.8442 5.5261 27 6 1.7424 -0.3311 5.8506 28 6 2.6905 0.2447 4.7785 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7715 -1.2057 33 1 1.6054 -0.2617 -2.1370 34 1 5.9957 -1.0828 -3.4382 35 1 5.9935 -0.1476 -1.9236 36 1 9.1688 -3.4663 -0.9157 37 1 4.1165 -2.6915 -3.7857 38 1 2.5791 -2.3326 -2.9635 39 1 2.4845 -0.1314 -4.1014 40 1 4.0219 -0.4904 -4.9235 41 1 2.2528 -1.6308 1.1515 42 1 3.6444 -1.1350 3.4033 43 1 0.6804 -1.6592 3.5908 44 1 2.0443 -2.8210 3.6064 45 1 2.5509 -2.3623 5.9197 46 1 0.7595 -2.2839 5.9189 47 1 2.1530 -0.1724 6.8478 48 1 0.7545 0.1220 5.7693 49 1 3.7044 0.3100 5.1729 50 1 2.3468 1.2310 4.4665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171392630.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:13 Heat of formation + Delta-G solvation = -89.377244 kcal Electronic energy + Delta-G solvation = -29660.255127 eV Core-core repulsion = 25685.758799 eV Total energy + Delta-G solvation = -3974.496328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.36913 -40.58933 -38.23745 -37.90293 -36.87268 -36.36516 -34.78803 -32.82692 -32.25384 -30.43032 -29.72576 -29.47968 -28.38144 -25.17930 -24.55846 -23.46819 -21.87567 -21.44579 -20.56478 -19.81963 -19.14732 -18.50272 -18.31312 -17.82594 -17.37319 -16.94366 -16.57445 -16.21430 -15.79841 -15.69114 -15.63079 -15.33510 -14.93132 -14.65696 -14.39845 -14.37730 -14.17202 -13.85799 -13.78186 -13.53169 -13.39405 -13.36781 -13.12455 -12.79877 -12.75267 -12.64306 -12.61378 -12.39153 -12.22292 -12.02426 -11.99497 -11.94518 -11.92034 -11.70716 -11.67282 -11.63983 -11.41659 -10.76550 -10.64912 -10.55674 -9.94483 -9.39827 -8.27446 -6.30488 1.37038 1.41352 1.47520 1.73243 1.75704 1.89509 1.94127 2.31796 2.35848 2.36564 3.08008 3.17824 3.55455 3.68472 3.73098 3.78252 3.86533 4.08914 4.15452 4.27661 4.29612 4.47697 4.50548 4.53587 4.55478 4.59359 4.70100 4.73563 4.74456 4.82010 4.85594 4.86219 4.93617 4.97988 5.07046 5.08878 5.13689 5.17045 5.24415 5.24491 5.37069 5.39498 5.46504 5.54613 5.67213 5.69909 6.30750 6.62303 6.66075 6.72449 6.77315 7.30589 7.36630 7.53488 8.88956 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008656 B = 0.003726 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3234.139820 B = 7513.123915 C = 9838.812099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.153 3.847 3 H 0.058 0.942 4 C -0.141 4.141 5 C 0.499 3.501 6 O -0.579 6.579 7 N -0.595 5.595 8 C 0.222 3.778 9 C -0.526 4.526 10 H 0.035 0.965 11 C 0.012 3.988 12 N -0.947 5.947 13 Si 0.937 3.063 14 H -0.283 1.283 15 H -0.284 1.284 16 H -0.229 1.229 17 C 0.112 3.888 18 C -0.039 4.039 19 C 0.246 3.754 20 N -0.493 5.493 21 N -0.707 5.707 22 C 0.522 3.478 23 O -0.586 6.586 24 C -0.119 4.119 25 C -0.107 4.107 26 C -0.119 4.119 27 C -0.118 4.118 28 C -0.122 4.122 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.147 0.853 34 H 0.055 0.945 35 H 0.019 0.981 36 H 0.265 0.735 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.142 0.858 40 H 0.123 0.877 41 H 0.405 0.595 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.362 3.796 3.029 18.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.048 3.952 3 H 0.076 0.924 4 C -0.180 4.180 5 C 0.288 3.712 6 O -0.459 6.459 7 N -0.326 5.326 8 C 0.100 3.900 9 C -0.565 4.565 10 H 0.054 0.946 11 C -0.186 4.186 12 N -0.588 5.588 13 Si 0.761 3.239 14 H -0.209 1.209 15 H -0.210 1.210 16 H -0.152 1.152 17 C -0.013 4.013 18 C -0.080 4.080 19 C -0.071 4.071 20 N -0.171 5.171 21 N -0.356 5.356 22 C 0.309 3.691 23 O -0.467 6.467 24 C -0.140 4.140 25 C -0.145 4.145 26 C -0.156 4.156 27 C -0.156 4.156 28 C -0.160 4.160 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.144 0.856 33 H 0.165 0.835 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.159 0.841 40 H 0.141 0.859 41 H 0.240 0.760 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.096 0.904 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.930 4.030 2.296 18.520 hybrid contribution 1.856 0.096 0.197 1.869 sum -16.074 4.125 2.493 16.781 Atomic orbital electron populations 1.22090 0.92530 1.03442 1.02773 1.20741 0.94831 0.96406 0.83197 0.92395 1.22214 0.89896 1.05221 1.00713 1.21312 0.91231 0.78012 0.80630 1.90728 1.71570 1.44285 1.39275 1.47860 1.07043 1.53767 1.23940 1.19348 0.78093 0.95314 0.97279 1.21606 0.91866 1.08529 1.34516 0.94628 1.25755 0.99733 0.97422 0.95676 1.70041 1.11785 1.32253 1.44700 0.85879 0.78685 0.79062 0.80321 1.20934 1.20991 1.15215 1.21551 0.98449 0.93922 0.87355 1.19885 1.00897 0.97709 0.89528 1.29186 0.92122 0.92476 0.93365 1.81271 1.12337 1.10862 1.12602 1.45888 1.66325 1.14118 1.09281 1.20820 0.76075 0.86636 0.85548 1.90588 1.52728 1.17685 1.85713 1.22011 1.01232 0.97820 0.92946 1.22353 0.98166 0.96623 0.97360 1.22517 1.03002 0.95903 0.94217 1.22337 0.99065 0.95948 0.98243 1.22149 1.00620 0.98974 0.94247 0.94086 0.89187 0.90341 0.85633 0.83510 0.92687 0.96335 0.92654 0.90094 0.87170 0.84074 0.85875 0.76048 0.89244 0.91021 0.89696 0.90733 0.89637 0.90381 0.91775 0.91607 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.48 71.98 0.68 -1.76 16 2 C 0.15 3.52 2.14 45.00 0.10 3.62 16 3 H 0.06 1.79 7.39 -2.39 -0.02 1.77 16 4 C -0.14 -2.53 3.79 29.85 0.11 -2.42 16 5 C 0.50 15.50 7.53 87.66 0.66 16.16 16 6 O -0.58 -25.03 14.93 -3.03 -0.05 -25.07 16 7 N -0.60 -18.23 2.46 -826.15 -2.03 -20.26 16 8 C 0.22 9.18 4.23 85.63 0.36 9.54 16 9 C -0.53 -27.90 9.94 25.60 0.25 -27.65 16 10 H 0.04 2.10 8.06 -2.91 -0.02 2.08 16 11 C 0.01 0.66 5.47 84.65 0.46 1.12 16 12 N -0.95 -57.30 13.96 21.45 0.30 -57.01 16 13 Si 0.94 41.95 27.47 68.60 1.88 43.83 16 14 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.23 -8.85 6.54 99.48 0.65 -8.20 16 17 C 0.11 2.20 5.17 86.38 0.45 2.64 16 18 C -0.04 -0.51 6.03 28.79 0.17 -0.34 16 19 C 0.25 4.40 15.43 89.44 1.38 5.78 16 20 N -0.49 -12.20 18.54 20.00 0.37 -11.83 16 21 N -0.71 -18.52 4.16 -442.53 -1.84 -20.36 16 22 C 0.52 16.20 6.97 87.66 0.61 16.81 16 23 O -0.59 -22.38 14.87 -3.03 -0.04 -22.43 16 24 C -0.12 -3.07 3.29 -10.81 -0.04 -3.11 16 25 C -0.11 -2.00 6.30 31.70 0.20 -1.80 16 26 C -0.12 -1.91 6.91 31.91 0.22 -1.69 16 27 C -0.12 -2.22 6.83 31.67 0.22 -2.01 16 28 C -0.12 -3.09 6.40 31.32 0.20 -2.88 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.13 1.60 7.40 -2.39 -0.02 1.59 16 33 H 0.15 1.38 7.19 -2.39 -0.02 1.36 16 34 H 0.06 2.03 7.13 -2.39 -0.02 2.01 16 35 H 0.02 0.85 6.85 -2.39 -0.02 0.84 16 36 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.08 1.89 8.07 -2.39 -0.02 1.87 16 38 H 0.11 1.51 6.44 -2.39 -0.02 1.49 16 39 H 0.14 0.99 7.22 -2.39 -0.02 0.98 16 40 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.40 9.40 8.59 -92.71 -0.80 8.60 16 42 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.07 1.30 7.85 -2.39 -0.02 1.28 16 44 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 46 H 0.09 1.08 8.14 -2.38 -0.02 1.07 16 47 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.06 1.94 6.39 -2.38 -0.02 1.92 16 Total: -1.00 -83.77 409.49 4.73 -79.04 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.09 Total: 22.06 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 6.04 Total: 12.02 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -3.20 Total: -109.46 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: -0.09 Total: -47.50 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.88 Total: 43.83 kcal Total: -83.77 4.73 -79.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171392630.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.335 kcal (2) G-P(sol) polarization free energy of solvation -83.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds