Wall clock time and date at job start Tue Mar 31 2020 18:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 C 1.50699 * 109.47239 * 180.02562 * 5 4 2 7 7 C 1.34849 * 125.88981 * 85.02535 * 6 5 4 8 8 C 1.40888 * 107.41629 * 180.02562 * 7 6 5 9 9 C 1.34852 * 107.41917 * 359.97438 * 8 7 6 10 10 N 1.36342 * 125.88862 * 264.71536 * 6 5 4 11 11 C 1.46496 * 125.63759 * 0.02562 * 10 6 5 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.34781 * 119.99732 * 274.99921 * 12 2 1 14 14 O 1.21349 * 119.99886 * 0.02562 * 13 12 2 15 15 C 1.49444 * 120.00017 * 180.02562 * 13 12 2 16 16 O 1.21347 * 119.99984 * 359.97438 * 15 13 12 17 17 N 1.34771 * 120.00025 * 179.97438 * 15 13 12 18 18 C 1.46505 * 120.00080 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.47270 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.47227 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.47239 * 179.97438 * 20 19 18 22 22 H 1.07998 * 120.00155 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00036 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99820 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 119.99946 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46943 * 89.99898 * 25 23 21 27 27 H 1.48501 * 109.46897 * 209.99993 * 25 23 21 28 28 H 1.48498 * 109.47216 * 329.99745 * 25 23 21 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 33 33 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 34 34 H 1.08999 * 109.47112 * 300.00392 * 5 4 2 35 35 H 1.09001 * 109.46642 * 60.00139 * 5 4 2 36 36 H 1.08000 * 126.29363 * 359.97438 * 7 6 5 37 37 H 1.08000 * 126.29335 * 180.02562 * 8 7 6 38 38 H 1.07994 * 125.89156 * 179.97438 * 9 8 7 39 39 H 1.09002 * 109.47035 * 89.99657 * 11 10 6 40 40 H 1.08998 * 109.47161 * 210.00003 * 11 10 6 41 41 H 1.09002 * 109.47445 * 330.00086 * 11 10 6 42 42 H 0.96998 * 120.00364 * 94.99433 * 12 2 1 43 43 H 0.97003 * 120.00401 * 359.97438 * 17 15 13 44 44 H 1.08998 * 109.47110 * 299.99808 * 18 17 15 45 45 H 1.08997 * 109.47333 * 59.99801 * 18 17 15 46 46 H 1.09006 * 109.46812 * 300.00264 * 19 18 17 47 47 H 1.08997 * 109.47149 * 59.99634 * 19 18 17 48 48 H 1.08998 * 109.46848 * 299.99567 * 20 19 18 49 49 H 1.08995 * 109.47228 * 59.99913 * 20 19 18 50 50 H 0.96999 * 119.99747 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0671 -1.3232 -2.5446 7 6 4.1521 -0.7951 -3.7824 8 6 4.6698 -1.7927 -4.6319 9 6 4.8819 -2.8924 -3.8807 10 7 4.5194 -2.6084 -2.5974 11 6 4.5981 -3.5328 -1.4637 12 7 2.0184 -0.6907 1.1961 13 6 2.1472 -0.0183 2.3571 14 8 1.8581 1.1590 2.4117 15 6 2.6459 -0.7227 3.5772 16 8 2.9345 -1.9000 3.5227 17 7 2.7751 -0.0502 4.7380 18 6 3.2635 -0.7409 5.9342 19 6 3.3149 0.2422 7.1054 20 6 3.8256 -0.4789 8.3545 21 6 3.8769 0.4896 9.5080 22 1 3.5758 1.5168 9.3644 23 6 4.3082 0.0643 10.7466 24 7 4.3534 0.9096 11.7530 25 14 4.8282 -1.7126 10.9950 26 1 6.2811 -1.8463 10.7186 27 1 4.5515 -2.1179 12.3966 28 1 4.0654 -2.5859 10.0674 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6053 -0.2617 -2.1370 34 1 3.8532 0.4369 -1.3574 35 1 3.9994 -1.0729 -0.4261 36 1 3.8737 0.2080 -4.0700 37 1 4.8622 -1.6946 -5.6901 38 1 5.2749 -3.8343 -4.2339 39 1 3.6643 -4.0893 -1.3832 40 1 5.4232 -4.2280 -1.6184 41 1 4.7652 -2.9690 -0.5460 42 1 2.2491 -1.6318 1.1526 43 1 2.5447 0.8911 4.7815 44 1 2.5907 -1.5626 6.1794 45 1 4.2625 -1.1334 5.7447 46 1 3.9875 1.0643 6.8604 47 1 2.3158 0.6344 7.2948 48 1 3.1533 -1.3011 8.5996 49 1 4.8248 -0.8707 8.1648 50 1 4.6572 0.6104 12.6243 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286777911.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:20 Heat of formation + Delta-G solvation = -44.695811 kcal Electronic energy + Delta-G solvation = -27842.390037 eV Core-core repulsion = 23869.831242 eV Total energy + Delta-G solvation = -3972.558795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.56152 -40.77291 -38.85290 -36.98086 -35.76461 -33.54568 -33.19035 -33.15008 -31.50911 -31.09300 -27.93780 -27.70310 -26.70439 -25.16518 -24.00520 -22.61040 -21.25796 -20.92107 -20.78097 -20.17963 -19.41205 -18.47722 -17.26371 -17.13505 -16.76409 -16.15828 -15.95127 -15.68882 -15.22971 -15.00656 -14.79642 -14.31248 -14.25111 -13.97109 -13.78062 -13.77375 -13.51007 -13.32542 -12.84465 -12.75618 -12.73367 -12.56903 -12.38009 -12.20332 -12.12030 -12.00310 -11.89314 -11.75025 -11.35531 -11.26285 -11.14309 -10.94665 -10.20493 -10.00997 -9.81262 -9.59232 -9.53873 -9.26465 -9.11470 -8.90960 -8.58461 -8.30301 -6.08731 -4.07822 1.32990 1.91419 2.25178 2.62012 2.73210 3.13232 3.28254 3.36055 3.39157 3.55768 4.09618 4.38977 4.40787 4.41375 4.46976 4.51753 4.70905 4.75390 4.81136 4.94906 5.02486 5.11243 5.19384 5.24883 5.27715 5.31841 5.32887 5.40068 5.45236 5.52937 5.55961 5.69493 5.83119 5.89316 5.98873 6.00747 6.06795 6.11691 6.35504 6.50230 6.70872 6.72897 6.82886 6.92727 7.05148 7.17129 7.30176 7.30548 7.63998 7.72389 7.94063 8.47542 8.95348 9.52986 11.04473 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017508 B = 0.001789 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.926741 B =15650.551100 C =16680.847209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 H 0.095 0.905 4 C -0.119 4.119 5 C -0.053 4.053 6 C 0.017 3.983 7 C -0.198 4.198 8 C -0.201 4.201 9 C -0.020 4.020 10 N -0.447 5.447 11 C 0.068 3.932 12 N -0.700 5.700 13 C 0.509 3.491 14 O -0.517 6.517 15 C 0.500 3.500 16 O -0.529 6.529 17 N -0.691 5.691 18 C 0.111 3.889 19 C -0.116 4.116 20 C -0.010 4.010 21 C -0.524 4.524 22 H 0.073 0.927 23 C 0.067 3.933 24 N -0.902 5.902 25 Si 0.880 3.120 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.265 1.265 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.159 0.841 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.410 0.590 43 H 0.413 0.587 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.019 0.981 49 H 0.015 0.985 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.792 -7.137 -33.433 34.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 H 0.114 0.886 4 C -0.157 4.157 5 C -0.091 4.091 6 C -0.094 4.094 7 C -0.223 4.223 8 C -0.225 4.225 9 C -0.149 4.149 10 N -0.123 5.123 11 C -0.074 4.074 12 N -0.354 5.354 13 C 0.290 3.710 14 O -0.392 6.392 15 C 0.280 3.720 16 O -0.407 6.407 17 N -0.343 5.343 18 C -0.011 4.011 19 C -0.154 4.154 20 C -0.048 4.048 21 C -0.562 4.562 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.540 5.540 25 Si 0.707 3.293 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.189 1.189 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.177 0.823 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.246 0.754 43 H 0.249 0.751 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.037 0.963 49 H 0.033 0.967 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.720 -7.353 -32.920 33.935 hybrid contribution 0.375 -1.016 0.270 1.116 sum -3.345 -8.369 -32.650 33.871 Atomic orbital electron populations 1.22184 0.94568 1.02515 1.03046 1.21152 0.94525 0.97798 0.83039 0.88648 1.21904 0.95029 1.01410 0.97379 1.20154 0.94990 1.00519 0.93453 1.20290 1.06806 0.85198 0.97116 1.20680 1.09165 1.00154 0.92254 1.20872 1.08392 0.93844 0.99423 1.21789 1.08899 1.00874 0.83363 1.43955 1.49452 1.10796 1.08070 1.22047 1.03351 0.93468 0.88508 1.45892 1.65782 1.14798 1.08921 1.20304 0.78903 0.87035 0.84774 1.90771 1.48315 1.15335 1.84771 1.20062 0.80055 0.87118 0.84770 1.90744 1.49510 1.15331 1.85069 1.46031 1.63851 1.15144 1.09228 1.21847 0.99614 0.96450 0.83162 1.21746 1.02068 0.97743 0.93796 1.19500 0.95906 0.96621 0.92786 1.21090 1.44516 0.97639 0.92908 0.90925 1.25029 0.95014 0.97469 0.95945 1.69911 1.47602 1.34951 1.01569 0.86775 0.79361 0.85715 0.77428 1.20247 1.21342 1.18939 0.91693 0.91158 0.92245 0.91288 0.89366 0.89506 0.91157 0.84865 0.84878 0.82343 0.90846 0.89818 0.89666 0.75421 0.75107 0.91121 0.91132 0.91798 0.91768 0.96252 0.96695 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.48 37.16 0.35 -0.75 16 2 C 0.14 0.96 2.57 -67.93 -0.17 0.79 16 3 H 0.10 0.77 7.58 -51.93 -0.39 0.37 16 4 C -0.12 -0.65 4.74 -26.73 -0.13 -0.77 16 5 C -0.05 -0.35 5.38 -27.88 -0.15 -0.50 16 6 C 0.02 0.14 6.14 -81.79 -0.50 -0.36 16 7 C -0.20 -1.71 10.76 -39.78 -0.43 -2.14 16 8 C -0.20 -1.68 10.86 -39.78 -0.43 -2.11 16 9 C -0.02 -0.15 11.44 -16.75 -0.19 -0.34 16 10 N -0.45 -3.39 3.15 -119.90 -0.38 -3.77 16 11 C 0.07 0.34 10.91 59.84 0.65 0.99 16 12 N -0.70 -5.98 4.52 -54.23 -0.25 -6.22 16 13 C 0.51 5.98 7.85 -11.59 -0.09 5.89 16 14 O -0.52 -7.10 16.14 5.50 0.09 -7.01 16 15 C 0.50 6.77 7.89 -11.59 -0.09 6.68 16 16 O -0.53 -8.06 16.48 5.50 0.09 -7.97 16 17 N -0.69 -9.52 5.55 -60.73 -0.34 -9.86 16 18 C 0.11 1.74 5.67 -4.04 -0.02 1.72 16 19 C -0.12 -2.10 5.27 -26.73 -0.14 -2.24 16 20 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 21 C -0.52 -14.59 9.66 -34.44 -0.33 -14.93 16 22 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 23 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 24 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 25 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.47 6.52 -51.93 -0.34 0.13 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.41 6.94 -51.93 -0.36 0.05 16 42 H 0.41 3.08 8.07 -40.82 -0.33 2.75 16 43 H 0.41 5.26 7.94 -40.82 -0.32 4.93 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 49 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 50 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 416.17 15.07 6.27 6.27 Total: -1.00 -33.64 416.17 -8.74 -42.38 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.44 Total: 2.81 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.89 Total: -6.61 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.19 Total: -46.59 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.18 Total: -14.99 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.64 -8.74 -42.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286777911.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.318 kcal (2) G-P(sol) polarization free energy of solvation -33.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds