Wall clock time and date at job start Tue Mar 31 2020 18:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 C 1.50699 * 109.47239 * 180.02562 * 5 4 2 7 7 C 1.34849 * 125.88981 * 85.02535 * 6 5 4 8 8 C 1.40888 * 107.41629 * 180.02562 * 7 6 5 9 9 C 1.34852 * 107.41917 * 359.97438 * 8 7 6 10 10 N 1.36342 * 125.88862 * 264.71536 * 6 5 4 11 11 C 1.46496 * 125.63759 * 0.02562 * 10 6 5 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.34781 * 119.99732 * 274.99921 * 12 2 1 14 14 O 1.21349 * 119.99886 * 0.02562 * 13 12 2 15 15 C 1.49444 * 120.00017 * 180.02562 * 13 12 2 16 16 O 1.21347 * 119.99984 * 359.97438 * 15 13 12 17 17 N 1.34771 * 120.00025 * 179.97438 * 15 13 12 18 18 C 1.46505 * 120.00080 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.47270 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.47227 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.47239 * 179.97438 * 20 19 18 22 22 H 1.07998 * 120.00155 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00036 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99820 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 119.99946 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46943 * 89.99898 * 25 23 21 27 27 H 1.48501 * 109.46897 * 209.99993 * 25 23 21 28 28 H 1.48498 * 109.47216 * 329.99745 * 25 23 21 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 33 33 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 34 34 H 1.08999 * 109.47112 * 300.00392 * 5 4 2 35 35 H 1.09001 * 109.46642 * 60.00139 * 5 4 2 36 36 H 1.08000 * 126.29363 * 359.97438 * 7 6 5 37 37 H 1.08000 * 126.29335 * 180.02562 * 8 7 6 38 38 H 1.07994 * 125.89156 * 179.97438 * 9 8 7 39 39 H 1.09002 * 109.47035 * 89.99657 * 11 10 6 40 40 H 1.08998 * 109.47161 * 210.00003 * 11 10 6 41 41 H 1.09002 * 109.47445 * 330.00086 * 11 10 6 42 42 H 0.96998 * 120.00364 * 94.99433 * 12 2 1 43 43 H 0.97003 * 120.00401 * 359.97438 * 17 15 13 44 44 H 1.08998 * 109.47110 * 299.99808 * 18 17 15 45 45 H 1.08997 * 109.47333 * 59.99801 * 18 17 15 46 46 H 1.09006 * 109.46812 * 300.00264 * 19 18 17 47 47 H 1.08997 * 109.47149 * 59.99634 * 19 18 17 48 48 H 1.08998 * 109.46848 * 299.99567 * 20 19 18 49 49 H 1.08995 * 109.47228 * 59.99913 * 20 19 18 50 50 H 0.96999 * 119.99747 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0671 -1.3232 -2.5446 7 6 4.1521 -0.7951 -3.7824 8 6 4.6698 -1.7927 -4.6319 9 6 4.8819 -2.8924 -3.8807 10 7 4.5194 -2.6084 -2.5974 11 6 4.5981 -3.5328 -1.4637 12 7 2.0184 -0.6907 1.1961 13 6 2.1472 -0.0183 2.3571 14 8 1.8581 1.1590 2.4117 15 6 2.6459 -0.7227 3.5772 16 8 2.9345 -1.9000 3.5227 17 7 2.7751 -0.0502 4.7380 18 6 3.2635 -0.7409 5.9342 19 6 3.3149 0.2422 7.1054 20 6 3.8256 -0.4789 8.3545 21 6 3.8769 0.4896 9.5080 22 1 3.5758 1.5168 9.3644 23 6 4.3082 0.0643 10.7466 24 7 4.3534 0.9096 11.7530 25 14 4.8282 -1.7126 10.9950 26 1 6.2811 -1.8463 10.7186 27 1 4.5515 -2.1179 12.3966 28 1 4.0654 -2.5859 10.0674 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6053 -0.2617 -2.1370 34 1 3.8532 0.4369 -1.3574 35 1 3.9994 -1.0729 -0.4261 36 1 3.8737 0.2080 -4.0700 37 1 4.8622 -1.6946 -5.6901 38 1 5.2749 -3.8343 -4.2339 39 1 3.6643 -4.0893 -1.3832 40 1 5.4232 -4.2280 -1.6184 41 1 4.7652 -2.9690 -0.5460 42 1 2.2491 -1.6318 1.1526 43 1 2.5447 0.8911 4.7815 44 1 2.5907 -1.5626 6.1794 45 1 4.2625 -1.1334 5.7447 46 1 3.9875 1.0643 6.8604 47 1 2.3158 0.6344 7.2948 48 1 3.1533 -1.3011 8.5996 49 1 4.8248 -0.8707 8.1648 50 1 4.6572 0.6104 12.6243 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286777911.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:19 Heat of formation + Delta-G solvation = -66.367083 kcal Electronic energy + Delta-G solvation = -27843.329774 eV Core-core repulsion = 23869.831242 eV Total energy + Delta-G solvation = -3973.498532 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.11081 -41.73469 -39.84663 -37.75270 -37.09205 -35.21447 -33.98471 -33.66279 -33.28376 -31.73950 -29.32628 -28.47064 -27.14641 -26.35764 -24.76479 -23.93794 -22.29895 -21.89185 -21.50043 -21.29747 -19.93634 -19.55606 -18.84397 -18.06613 -17.75451 -17.18425 -16.91290 -16.51092 -16.18679 -16.13149 -15.92720 -15.41618 -15.14385 -14.92268 -14.77721 -14.68488 -14.46759 -14.03739 -13.92130 -13.81843 -13.62491 -13.30242 -13.29430 -13.11462 -12.88065 -12.85752 -12.73780 -12.70853 -12.68387 -12.40092 -11.91666 -11.88056 -11.79611 -11.77449 -11.60748 -11.33795 -10.75646 -10.69403 -10.36137 -10.26065 -9.46341 -8.87268 -8.28512 -6.33093 0.32701 1.30766 1.36183 1.38215 1.39958 1.51611 2.12623 2.13301 2.15089 2.37333 2.63160 3.07249 3.40945 3.57574 3.95800 3.99702 4.01821 4.03500 4.17210 4.20250 4.30371 4.41386 4.44152 4.47718 4.57306 4.65820 4.72961 4.76903 4.77402 4.80616 4.81718 4.86198 4.91570 4.99316 5.01466 5.18030 5.21684 5.28413 5.34418 5.42906 5.46269 5.49777 5.55188 5.64997 5.92199 6.15758 6.27902 6.33878 6.36625 6.55082 6.71544 6.75444 6.92659 7.31679 8.88047 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017508 B = 0.001789 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.926741 B =15650.551100 C =16680.847209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.086 0.914 4 C -0.106 4.106 5 C -0.049 4.049 6 C 0.008 3.992 7 C -0.220 4.220 8 C -0.223 4.223 9 C -0.026 4.026 10 N -0.451 5.451 11 C 0.062 3.938 12 N -0.683 5.683 13 C 0.514 3.486 14 O -0.540 6.540 15 C 0.502 3.498 16 O -0.545 6.545 17 N -0.690 5.690 18 C 0.125 3.875 19 C -0.105 4.105 20 C -0.010 4.010 21 C -0.534 4.534 22 H 0.034 0.966 23 C 0.003 3.997 24 N -0.952 5.952 25 Si 0.950 3.050 26 H -0.267 1.267 27 H -0.286 1.286 28 H -0.243 1.243 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.181 0.819 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.417 0.583 43 H 0.418 0.582 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.025 0.975 49 H 0.024 0.976 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.852 -9.471 -35.187 36.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.105 0.895 4 C -0.144 4.144 5 C -0.087 4.087 6 C -0.104 4.104 7 C -0.244 4.244 8 C -0.247 4.247 9 C -0.156 4.156 10 N -0.127 5.127 11 C -0.079 4.079 12 N -0.336 5.336 13 C 0.294 3.706 14 O -0.417 6.417 15 C 0.282 3.718 16 O -0.423 6.423 17 N -0.342 5.342 18 C 0.002 3.998 19 C -0.143 4.143 20 C -0.048 4.048 21 C -0.572 4.572 22 H 0.052 0.948 23 C -0.194 4.194 24 N -0.592 5.592 25 Si 0.774 3.226 26 H -0.192 1.192 27 H -0.212 1.212 28 H -0.166 1.166 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.198 0.802 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.255 0.745 43 H 0.255 0.745 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.044 0.956 49 H 0.042 0.958 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.791 -9.703 -34.719 36.248 hybrid contribution 0.377 -0.215 0.760 0.875 sum -3.414 -9.917 -33.958 35.541 Atomic orbital electron populations 1.22160 0.93988 1.02984 1.02877 1.21258 0.94871 0.97405 0.82754 0.89548 1.21797 0.94192 1.01677 0.96702 1.20133 0.95611 1.00198 0.92784 1.20498 1.06881 0.85672 0.97338 1.20919 1.09945 1.00684 0.92888 1.21140 1.09117 0.94334 1.00138 1.22206 1.08375 1.01551 0.83432 1.44187 1.48915 1.10937 1.08659 1.22237 1.04583 0.93370 0.87680 1.45899 1.64270 1.15061 1.08386 1.19975 0.79043 0.86651 0.84950 1.90772 1.49770 1.16164 1.85044 1.20332 0.79463 0.86896 0.85060 1.90734 1.50203 1.16003 1.85380 1.45915 1.63894 1.15410 1.08982 1.21535 0.99981 0.95507 0.82797 1.21526 1.01720 0.97909 0.93171 1.19456 0.96758 0.95868 0.92763 1.21487 1.43653 0.97122 0.94934 0.94782 1.26035 0.95192 1.02594 0.95599 1.70071 1.49310 1.37548 1.02293 0.85653 0.79523 0.79754 0.77703 1.19185 1.21223 1.16650 0.93759 0.89453 0.91439 0.90540 0.88410 0.89738 0.91311 0.84482 0.84128 0.80187 0.89688 0.88490 0.89632 0.74547 0.74513 0.90953 0.90844 0.91868 0.91886 0.95642 0.95758 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.48 71.98 0.68 -1.19 16 2 C 0.14 1.71 2.57 44.99 0.12 1.82 16 3 H 0.09 1.28 7.58 -2.39 -0.02 1.26 16 4 C -0.11 -0.93 4.74 30.60 0.14 -0.78 16 5 C -0.05 -0.57 5.38 29.85 0.16 -0.41 16 6 C 0.01 0.12 6.14 41.08 0.25 0.37 16 7 C -0.22 -3.67 10.76 22.14 0.24 -3.43 16 8 C -0.22 -3.58 10.86 22.14 0.24 -3.33 16 9 C -0.03 -0.36 11.44 83.21 0.95 0.59 16 10 N -0.45 -6.12 3.15 -533.26 -1.68 -7.80 16 11 C 0.06 0.49 10.91 127.77 1.39 1.88 16 12 N -0.68 -10.49 4.52 -443.86 -2.01 -12.50 16 13 C 0.51 11.40 7.85 87.27 0.69 12.08 16 14 O -0.54 -14.40 16.14 -3.24 -0.05 -14.45 16 15 C 0.50 12.81 7.89 87.27 0.69 13.49 16 16 O -0.54 -15.55 16.48 -3.24 -0.05 -15.60 16 17 N -0.69 -18.05 5.55 -464.43 -2.58 -20.62 16 18 C 0.12 3.66 5.67 86.38 0.49 4.15 16 19 C -0.11 -3.73 5.27 30.59 0.16 -3.57 16 20 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 21 C -0.53 -30.14 9.66 25.60 0.25 -29.90 16 22 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 23 C 0.00 0.14 5.47 84.66 0.46 0.61 16 24 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 25 Si 0.95 43.49 27.47 68.60 1.88 45.37 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 28 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 0.81 6.52 -2.39 -0.02 0.80 16 36 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.10 0.49 8.14 -2.39 -0.02 0.48 16 41 H 0.08 0.67 6.94 -2.39 -0.02 0.65 16 42 H 0.42 5.36 8.07 -92.71 -0.75 4.61 16 43 H 0.42 10.21 7.94 -92.71 -0.74 9.48 16 44 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 47 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.03 1.10 7.20 -2.39 -0.02 1.08 16 49 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 50 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -72.78 416.17 2.25 -70.53 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -0.60 Total: 22.12 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 7.04 Total: -7.95 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -5.96 Total: -100.01 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.11 Total: -30.06 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.37 kcal Total: -72.78 2.25 -70.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286777911.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.161 kcal (2) G-P(sol) polarization free energy of solvation -72.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds