Wall clock time and date at job start Tue Mar 31 2020 18:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.60734 * 2 1 4 4 C 1.53374 * 109.60676 * 239.48635 * 2 1 3 5 5 N 1.47005 * 108.76541 * 190.92288 * 4 2 1 6 6 C 1.34775 * 120.61245 * 235.15630 * 5 4 2 7 7 O 1.21277 * 119.99972 * 179.76162 * 6 5 4 8 8 C 1.50708 * 119.99987 * 359.76349 * 6 5 4 9 9 C 1.52996 * 109.46947 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47154 * 180.02562 * 9 8 6 11 11 C 1.47204 * 109.47289 * 180.02562 * 10 9 8 12 12 N 8.75235 * 124.37288 * 285.61292 * 2 1 3 13 13 C 1.46961 * 118.79345 * 54.92186 * 5 4 2 14 14 C 1.53364 * 108.77799 * 305.07688 * 13 5 4 15 15 H 1.09003 * 109.60930 * 289.42114 * 14 13 5 16 16 C 1.52994 * 109.61319 * 169.08067 * 14 13 5 17 17 N 1.46963 * 109.60959 * 120.33995 * 2 1 3 18 18 C 1.34783 * 120.59392 * 354.99461 * 17 2 1 19 19 O 1.21279 * 120.00048 * 20.49776 * 18 17 2 20 20 C 1.50695 * 119.99558 * 200.49693 * 18 17 2 21 21 C 1.53004 * 109.46915 * 166.73473 * 20 18 17 22 22 C 1.50700 * 109.47406 * 180.02562 * 21 20 18 23 23 H 1.08006 * 119.99742 * 359.97438 * 22 21 20 24 24 C 1.37881 * 120.00165 * 179.97438 * 22 21 20 25 25 N 1.31511 * 119.99631 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 119.99840 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47246 * 60.00091 * 26 24 22 28 28 H 1.48502 * 109.47019 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47312 * 299.99773 * 26 24 22 30 30 H 1.08996 * 109.47217 * 295.59534 * 1 2 3 31 31 H 1.08999 * 109.47015 * 55.59481 * 1 2 3 32 32 H 1.09005 * 109.46847 * 175.59384 * 1 2 3 33 33 H 1.08993 * 109.61097 * 310.57627 * 4 2 1 34 34 H 1.08997 * 109.60487 * 70.91945 * 4 2 1 35 35 H 1.09001 * 109.46920 * 299.99667 * 8 6 5 36 36 H 1.09000 * 109.46928 * 60.00049 * 8 6 5 37 37 H 1.09007 * 109.47357 * 299.99887 * 9 8 6 38 38 H 1.09005 * 109.47580 * 59.99923 * 9 8 6 39 39 H 1.08995 * 109.47125 * 299.99905 * 10 9 8 40 40 H 1.08997 * 109.47402 * 60.00002 * 10 9 8 41 41 H 1.08995 * 109.61099 * 185.24047 * 13 5 4 42 42 H 1.09004 * 109.60539 * 64.90039 * 13 5 4 43 43 H 1.09008 * 109.47161 * 52.19744 * 16 14 13 44 44 H 1.09000 * 109.47845 * 172.20148 * 16 14 13 45 45 H 1.09004 * 109.47236 * 292.20216 * 16 14 13 46 46 H 1.08994 * 109.47395 * 286.73142 * 20 18 17 47 47 H 1.09003 * 109.47233 * 46.73997 * 20 18 17 48 48 H 1.09008 * 109.46933 * 300.00176 * 21 20 18 49 49 H 1.09001 * 109.47136 * 59.99558 * 21 20 18 50 50 H 0.97000 * 119.99527 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0447 -0.7336 -1.2447 5 7 3.4908 -0.9542 -1.0995 6 6 4.3493 -0.5221 -2.0444 7 8 5.5406 -0.7062 -1.9112 8 6 3.8288 0.1898 -3.2665 9 6 5.0013 0.5718 -4.1722 10 6 4.4730 1.2951 -5.4126 11 6 5.6010 1.6621 -6.2843 12 7 6.4714 1.9443 -6.9575 13 6 3.9841 -1.6498 0.0974 14 6 3.4693 -0.9163 1.3420 15 1 3.9779 0.0431 1.4377 16 6 3.7370 -1.7656 2.5861 17 7 2.0233 -0.6993 1.1948 18 6 1.1647 -1.1343 2.1384 19 8 -0.0058 -1.2955 1.8652 20 6 1.6594 -1.4203 3.5328 21 6 0.4648 -1.5733 4.4764 22 6 0.9594 -1.8587 5.8710 23 1 2.0199 -1.9247 6.0649 24 6 0.0582 -2.0355 6.8994 25 7 -1.2330 -1.9545 6.6634 26 14 0.6714 -2.3885 8.6282 27 1 1.5261 -1.2650 9.0893 28 1 -0.4881 -2.5359 9.5442 29 1 1.4636 -3.6445 8.6256 30 1 -0.3633 0.4439 0.9268 31 1 -0.3633 0.5807 -0.8479 32 1 -0.3633 -1.0247 -0.0790 33 1 1.5383 -1.6942 -1.3387 34 1 1.8512 -0.1297 -2.1313 35 1 3.1498 -0.4683 -3.8087 36 1 3.2962 1.0910 -2.9627 37 1 5.6800 1.2300 -3.6297 38 1 5.5344 -0.3292 -4.4760 39 1 3.7941 0.6373 -5.9552 40 1 3.9403 2.1961 -5.1085 41 1 5.0741 -1.6498 0.0974 42 1 3.6182 -2.6766 0.1005 43 1 4.7880 -2.0541 2.6099 44 1 3.4986 -1.1877 3.4789 45 1 3.1153 -2.6605 2.5558 46 1 2.2407 -2.3423 3.5302 47 1 2.2869 -0.5960 3.8719 48 1 -0.1166 -0.6512 4.4790 49 1 -0.1628 -2.3975 4.1372 50 1 -1.8670 -2.0785 7.3870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291715833.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:03 Heat of formation + Delta-G solvation = 1.507442 kcal Electronic energy + Delta-G solvation = -29411.756646 eV Core-core repulsion = 25441.201374 eV Total energy + Delta-G solvation = -3970.555272 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.05005 -39.74535 -37.47613 -37.02207 -35.43406 -34.74132 -34.00207 -33.12963 -31.13249 -29.80661 -29.16244 -27.35739 -26.55414 -25.13344 -23.25657 -22.49310 -21.82491 -20.60064 -19.85697 -18.82980 -18.06912 -17.15778 -16.63484 -16.60903 -16.27346 -16.17114 -15.83665 -15.44004 -14.87843 -14.48388 -14.41706 -14.15584 -14.12276 -13.92562 -13.62129 -13.36303 -13.17523 -13.01994 -12.73352 -12.41740 -12.33532 -12.18477 -12.06463 -11.98299 -11.89341 -11.82080 -11.74634 -11.65153 -11.44066 -11.29608 -11.14386 -10.82335 -10.77087 -10.34266 -10.09613 -9.69952 -9.34798 -9.30184 -8.99754 -8.74679 -8.35153 -8.20178 -5.99243 -4.03553 2.27931 2.29832 2.37334 2.57831 3.05515 3.14318 3.31968 3.37291 3.38589 3.50360 4.02366 4.39772 4.43018 4.46474 4.49840 4.54833 4.71961 4.77430 4.83869 4.89922 4.93002 4.96193 5.00842 5.08234 5.22565 5.35453 5.36461 5.38953 5.47210 5.50538 5.58925 5.70025 5.72526 5.79825 5.89884 6.04009 6.09124 6.12558 6.28500 6.32892 6.49542 6.78304 6.86113 7.05170 7.14369 7.67932 7.69921 7.82157 7.83341 8.03235 8.35208 8.65537 9.04716 9.60246 11.11586 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029084 B = 0.002096 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.499347 B =13354.402316 C =14049.382407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.133 3.867 3 H 0.071 0.929 4 C 0.094 3.906 5 N -0.612 5.612 6 C 0.514 3.486 7 O -0.542 6.542 8 C -0.141 4.141 9 C -0.102 4.102 10 C -0.027 4.027 11 C 0.206 3.794 12 N -0.438 5.438 13 C 0.101 3.899 14 C 0.137 3.863 15 H 0.075 0.925 16 C -0.198 4.198 17 N -0.630 5.630 18 C 0.520 3.480 19 O -0.519 6.519 20 C -0.157 4.157 21 C 0.032 3.968 22 C -0.527 4.527 23 H 0.055 0.945 24 C 0.059 3.941 25 N -0.890 5.890 26 Si 0.892 3.108 27 H -0.277 1.277 28 H -0.288 1.288 29 H -0.277 1.277 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.083 0.917 48 H 0.016 0.984 49 H 0.025 0.975 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.008 4.868 -21.205 23.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.028 3.972 3 H 0.089 0.911 4 C -0.029 4.029 5 N -0.345 5.345 6 C 0.303 3.697 7 O -0.419 6.419 8 C -0.181 4.181 9 C -0.142 4.142 10 C -0.067 4.067 11 C -0.112 4.112 12 N -0.115 5.115 13 C -0.023 4.023 14 C 0.032 3.968 15 H 0.092 0.908 16 C -0.254 4.254 17 N -0.368 5.368 18 C 0.311 3.689 19 O -0.394 6.394 20 C -0.196 4.196 21 C -0.005 4.005 22 C -0.565 4.565 23 H 0.073 0.927 24 C -0.143 4.143 25 N -0.528 5.528 26 Si 0.719 3.281 27 H -0.203 1.203 28 H -0.213 1.213 29 H -0.202 1.202 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.125 0.875 45 H 0.099 0.901 46 H 0.127 0.873 47 H 0.101 0.899 48 H 0.035 0.965 49 H 0.044 0.956 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.113 5.083 -22.202 24.532 hybrid contribution -0.126 -0.221 1.254 1.279 sum 8.987 4.862 -20.949 23.308 Atomic orbital electron populations 1.22172 0.91670 1.04072 1.01861 1.21516 0.96349 0.94981 0.84331 0.91110 1.22367 0.79832 1.01797 0.98951 1.48109 1.07212 1.57820 1.21324 1.20648 0.86214 0.78641 0.84206 1.90717 1.15701 1.57136 1.78319 1.21691 0.99735 1.01967 0.94672 1.21291 0.97551 1.01766 0.93553 1.19340 0.91058 1.02992 0.93302 1.29182 0.94687 0.93385 0.93907 1.81257 1.10860 1.09033 1.10357 1.22138 1.01201 0.95733 0.83193 1.21414 0.81022 0.99219 0.95121 0.90750 1.23497 1.02305 1.01297 0.98346 1.48380 1.06389 1.60447 1.21593 1.21502 0.85563 0.74842 0.86971 1.90680 1.18321 1.49056 1.81325 1.23246 1.03022 1.02957 0.90330 1.19002 0.91459 0.98126 0.91911 1.21167 0.92783 1.49244 0.93309 0.92674 1.25013 0.94873 0.95429 0.98988 1.69980 1.00877 1.49520 1.32437 0.86674 0.78206 0.78806 0.84367 1.20288 1.21320 1.20235 0.90687 0.93633 0.90179 0.90413 0.88736 0.88177 0.88129 0.90109 0.90146 0.87141 0.87100 0.87918 0.90859 0.91625 0.87485 0.90122 0.87331 0.89922 0.96534 0.95636 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 7.62 37.16 0.28 -1.38 16 2 C 0.13 1.37 3.65 -67.48 -0.25 1.12 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 4 C 0.09 0.71 5.81 -3.57 -0.02 0.69 16 5 N -0.61 -5.35 2.96 -172.46 -0.51 -5.86 16 6 C 0.51 4.43 7.70 -10.98 -0.08 4.34 16 7 O -0.54 -6.73 15.39 5.56 0.09 -6.65 16 8 C -0.14 -0.53 4.04 -27.88 -0.11 -0.65 16 9 C -0.10 -0.43 4.46 -26.73 -0.12 -0.55 16 10 C -0.03 -0.05 5.70 -29.52 -0.17 -0.22 16 11 C 0.21 1.38 15.43 -20.76 -0.32 1.06 16 12 N -0.44 -4.62 18.54 42.15 0.78 -3.84 16 13 C 0.10 0.99 5.90 -3.60 -0.02 0.97 16 14 C 0.14 1.48 3.62 -67.49 -0.24 1.23 16 15 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 16 C -0.20 -2.17 7.08 37.15 0.26 -1.91 16 17 N -0.63 -8.16 2.95 -157.47 -0.46 -8.62 16 18 C 0.52 9.02 6.87 -10.99 -0.08 8.94 16 19 O -0.52 -10.64 11.84 5.56 0.07 -10.58 16 20 C -0.16 -2.92 3.25 -27.88 -0.09 -3.01 16 21 C 0.03 0.83 4.36 -27.88 -0.12 0.71 16 22 C -0.53 -14.32 9.11 -34.44 -0.31 -14.63 16 23 H 0.06 1.40 7.74 -52.48 -0.41 1.00 16 24 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 25 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 26 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 30 H 0.07 1.14 6.74 -51.93 -0.35 0.79 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 1.11 6.79 -51.93 -0.35 0.76 16 33 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.09 0.38 5.93 -51.93 -0.31 0.07 16 35 H 0.10 0.17 7.92 -51.93 -0.41 -0.24 16 36 H 0.10 0.18 7.72 -51.93 -0.40 -0.22 16 37 H 0.08 0.47 8.10 -51.92 -0.42 0.05 16 38 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 39 H 0.11 -0.03 8.14 -51.93 -0.42 -0.45 16 40 H 0.11 -0.02 8.14 -51.93 -0.42 -0.44 16 41 H 0.10 1.05 6.99 -51.93 -0.36 0.69 16 42 H 0.07 0.74 8.11 -51.93 -0.42 0.31 16 43 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 44 H 0.11 1.33 4.54 -51.93 -0.24 1.09 16 45 H 0.08 0.98 5.75 -51.93 -0.30 0.68 16 46 H 0.11 1.85 4.56 -51.93 -0.24 1.61 16 47 H 0.08 1.43 6.32 -51.93 -0.33 1.10 16 48 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 49 H 0.03 0.72 7.96 -51.93 -0.41 0.30 16 50 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 392.55 15.07 5.92 5.92 Total: -1.00 -36.65 392.55 -7.78 -44.43 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -7.88 Total: -3.24 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -1.49 Total: -1.73 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.54 Total: -44.26 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.15 Total: -17.22 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.65 -7.78 -44.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291715833.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.942 kcal (2) G-P(sol) polarization free energy of solvation -36.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds