Wall clock time and date at job start Tue Mar 31 2020 18:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.60734 * 2 1 4 4 C 1.53374 * 109.60676 * 239.48635 * 2 1 3 5 5 N 1.47005 * 108.76541 * 190.92288 * 4 2 1 6 6 C 1.34775 * 120.61245 * 235.15630 * 5 4 2 7 7 O 1.21277 * 119.99972 * 179.76162 * 6 5 4 8 8 C 1.50708 * 119.99987 * 359.76349 * 6 5 4 9 9 C 1.52996 * 109.46947 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47154 * 180.02562 * 9 8 6 11 11 C 1.47204 * 109.47289 * 180.02562 * 10 9 8 12 12 N 8.75235 * 124.37288 * 285.61292 * 2 1 3 13 13 C 1.46961 * 118.79345 * 54.92186 * 5 4 2 14 14 C 1.53364 * 108.77799 * 305.07688 * 13 5 4 15 15 H 1.09003 * 109.60930 * 289.42114 * 14 13 5 16 16 C 1.52994 * 109.61319 * 169.08067 * 14 13 5 17 17 N 1.46963 * 109.60959 * 120.33995 * 2 1 3 18 18 C 1.34783 * 120.59392 * 354.99461 * 17 2 1 19 19 O 1.21279 * 120.00048 * 20.49776 * 18 17 2 20 20 C 1.50695 * 119.99558 * 200.49693 * 18 17 2 21 21 C 1.53004 * 109.46915 * 166.73473 * 20 18 17 22 22 C 1.50700 * 109.47406 * 180.02562 * 21 20 18 23 23 H 1.08006 * 119.99742 * 359.97438 * 22 21 20 24 24 C 1.37881 * 120.00165 * 179.97438 * 22 21 20 25 25 N 1.31511 * 119.99631 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 119.99840 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47246 * 60.00091 * 26 24 22 28 28 H 1.48502 * 109.47019 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47312 * 299.99773 * 26 24 22 30 30 H 1.08996 * 109.47217 * 295.59534 * 1 2 3 31 31 H 1.08999 * 109.47015 * 55.59481 * 1 2 3 32 32 H 1.09005 * 109.46847 * 175.59384 * 1 2 3 33 33 H 1.08993 * 109.61097 * 310.57627 * 4 2 1 34 34 H 1.08997 * 109.60487 * 70.91945 * 4 2 1 35 35 H 1.09001 * 109.46920 * 299.99667 * 8 6 5 36 36 H 1.09000 * 109.46928 * 60.00049 * 8 6 5 37 37 H 1.09007 * 109.47357 * 299.99887 * 9 8 6 38 38 H 1.09005 * 109.47580 * 59.99923 * 9 8 6 39 39 H 1.08995 * 109.47125 * 299.99905 * 10 9 8 40 40 H 1.08997 * 109.47402 * 60.00002 * 10 9 8 41 41 H 1.08995 * 109.61099 * 185.24047 * 13 5 4 42 42 H 1.09004 * 109.60539 * 64.90039 * 13 5 4 43 43 H 1.09008 * 109.47161 * 52.19744 * 16 14 13 44 44 H 1.09000 * 109.47845 * 172.20148 * 16 14 13 45 45 H 1.09004 * 109.47236 * 292.20216 * 16 14 13 46 46 H 1.08994 * 109.47395 * 286.73142 * 20 18 17 47 47 H 1.09003 * 109.47233 * 46.73997 * 20 18 17 48 48 H 1.09008 * 109.46933 * 300.00176 * 21 20 18 49 49 H 1.09001 * 109.47136 * 59.99558 * 21 20 18 50 50 H 0.97000 * 119.99527 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0447 -0.7336 -1.2447 5 7 3.4908 -0.9542 -1.0995 6 6 4.3493 -0.5221 -2.0444 7 8 5.5406 -0.7062 -1.9112 8 6 3.8288 0.1898 -3.2665 9 6 5.0013 0.5718 -4.1722 10 6 4.4730 1.2951 -5.4126 11 6 5.6010 1.6621 -6.2843 12 7 6.4714 1.9443 -6.9575 13 6 3.9841 -1.6498 0.0974 14 6 3.4693 -0.9163 1.3420 15 1 3.9779 0.0431 1.4377 16 6 3.7370 -1.7656 2.5861 17 7 2.0233 -0.6993 1.1948 18 6 1.1647 -1.1343 2.1384 19 8 -0.0058 -1.2955 1.8652 20 6 1.6594 -1.4203 3.5328 21 6 0.4648 -1.5733 4.4764 22 6 0.9594 -1.8587 5.8710 23 1 2.0199 -1.9247 6.0649 24 6 0.0582 -2.0355 6.8994 25 7 -1.2330 -1.9545 6.6634 26 14 0.6714 -2.3885 8.6282 27 1 1.5261 -1.2650 9.0893 28 1 -0.4881 -2.5359 9.5442 29 1 1.4636 -3.6445 8.6256 30 1 -0.3633 0.4439 0.9268 31 1 -0.3633 0.5807 -0.8479 32 1 -0.3633 -1.0247 -0.0790 33 1 1.5383 -1.6942 -1.3387 34 1 1.8512 -0.1297 -2.1313 35 1 3.1498 -0.4683 -3.8087 36 1 3.2962 1.0910 -2.9627 37 1 5.6800 1.2300 -3.6297 38 1 5.5344 -0.3292 -4.4760 39 1 3.7941 0.6373 -5.9552 40 1 3.9403 2.1961 -5.1085 41 1 5.0741 -1.6498 0.0974 42 1 3.6182 -2.6766 0.1005 43 1 4.7880 -2.0541 2.6099 44 1 3.4986 -1.1877 3.4789 45 1 3.1153 -2.6605 2.5558 46 1 2.2407 -2.3423 3.5302 47 1 2.2869 -0.5960 3.8719 48 1 -0.1166 -0.6512 4.4790 49 1 -0.1628 -2.3975 4.1372 50 1 -1.8670 -2.0785 7.3870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291715833.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:02 Heat of formation + Delta-G solvation = -23.139440 kcal Electronic energy + Delta-G solvation = -29412.825415 eV Core-core repulsion = 25441.201374 eV Total energy + Delta-G solvation = -3971.624041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.01858 -40.63585 -38.24868 -37.81118 -36.55852 -35.37496 -35.15125 -34.58670 -32.74372 -30.61648 -29.93976 -28.57982 -27.43923 -26.46983 -24.38658 -23.24800 -22.71065 -22.03744 -20.69318 -19.70996 -18.68138 -18.41737 -17.77387 -17.53853 -17.03895 -17.02052 -16.83889 -16.46013 -16.24785 -15.71818 -15.26765 -15.07556 -14.99679 -14.73159 -14.59466 -14.25977 -14.19241 -13.92150 -13.79143 -13.66477 -13.60552 -13.16597 -13.07406 -12.86108 -12.70212 -12.61830 -12.60949 -12.48326 -12.41008 -12.36902 -12.17720 -12.10462 -12.05077 -11.52067 -11.32969 -11.26518 -10.86898 -10.65740 -10.50492 -10.16254 -10.09030 -9.18925 -8.15359 -6.28403 1.43326 1.46946 1.54449 1.63749 1.73906 1.75491 1.89784 1.91450 2.21923 2.44827 3.17772 3.17882 3.49848 3.68418 3.74984 3.90679 4.06542 4.12700 4.14255 4.20553 4.22744 4.27912 4.38676 4.46581 4.47957 4.57235 4.70805 4.75738 4.77443 4.80328 4.83617 4.88873 4.94214 4.96633 5.06562 5.11185 5.16881 5.27298 5.32375 5.39061 5.47004 5.47995 5.54028 5.68572 5.79869 5.89426 6.22159 6.39229 6.50001 6.70943 6.90548 7.21485 7.33699 7.41752 8.96755 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029084 B = 0.002096 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.499347 B =13354.402316 C =14049.382407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.125 3.875 3 H 0.092 0.908 4 C 0.102 3.898 5 N -0.613 5.613 6 C 0.509 3.491 7 O -0.587 6.587 8 C -0.134 4.134 9 C -0.099 4.099 10 C -0.019 4.019 11 C 0.234 3.766 12 N -0.519 5.519 13 C 0.104 3.896 14 C 0.138 3.862 15 H 0.086 0.914 16 C -0.196 4.196 17 N -0.622 5.622 18 C 0.520 3.480 19 O -0.561 6.561 20 C -0.146 4.146 21 C 0.040 3.960 22 C -0.540 4.540 23 H 0.075 0.925 24 C -0.005 4.005 25 N -0.936 5.936 26 Si 0.969 3.031 27 H -0.264 1.264 28 H -0.289 1.289 29 H -0.263 1.263 30 H 0.032 0.968 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.066 0.934 46 H 0.129 0.871 47 H 0.101 0.899 48 H -0.025 1.025 49 H -0.017 1.017 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.965 5.639 -22.448 24.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.022 3.978 3 H 0.110 0.890 4 C -0.021 4.021 5 N -0.345 5.345 6 C 0.300 3.700 7 O -0.467 6.467 8 C -0.173 4.173 9 C -0.139 4.139 10 C -0.058 4.058 11 C -0.082 4.082 12 N -0.198 5.198 13 C -0.020 4.020 14 C 0.034 3.966 15 H 0.104 0.896 16 C -0.253 4.253 17 N -0.358 5.358 18 C 0.310 3.690 19 O -0.440 6.440 20 C -0.185 4.185 21 C 0.002 3.998 22 C -0.578 4.578 23 H 0.093 0.907 24 C -0.203 4.203 25 N -0.576 5.576 26 Si 0.793 3.207 27 H -0.188 1.188 28 H -0.215 1.215 29 H -0.188 1.188 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.163 0.837 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.118 0.882 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.085 0.915 46 H 0.146 0.854 47 H 0.118 0.882 48 H -0.006 1.006 49 H 0.001 0.999 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.109 5.870 -23.482 26.231 hybrid contribution -0.427 -0.457 1.623 1.739 sum 9.682 5.413 -21.859 24.512 Atomic orbital electron populations 1.21981 0.92914 1.02726 1.01335 1.21824 0.95397 0.96201 0.84337 0.88978 1.22409 0.78652 1.01996 0.98999 1.48201 1.07825 1.57549 1.20971 1.21571 0.85518 0.77850 0.85040 1.90709 1.17815 1.58844 1.79331 1.21801 0.99811 1.03405 0.92265 1.21186 0.97608 1.00660 0.94400 1.19668 0.89612 1.04935 0.91594 1.30140 0.94239 0.91169 0.92701 1.81281 1.13366 1.11933 1.13180 1.21969 1.00957 0.95562 0.83484 1.21556 0.79491 0.99882 0.95662 0.89617 1.23349 1.03679 1.00405 0.97847 1.48347 1.06841 1.59103 1.21542 1.21167 0.85362 0.75142 0.87318 1.90687 1.20100 1.51212 1.81974 1.23217 1.00096 1.04828 0.90328 1.18804 0.93106 0.94311 0.93560 1.21684 0.93788 1.48331 0.93990 0.90714 1.26076 0.94919 0.95169 1.04092 1.70163 1.02534 1.51030 1.33913 0.85447 0.77668 0.79370 0.78211 1.18833 1.21498 1.18789 0.94927 0.89512 0.92768 0.91149 0.83747 0.84798 0.84700 0.92239 0.92280 0.83603 0.83587 0.88200 0.91313 0.89107 0.88839 0.91521 0.85401 0.88155 1.00639 0.99862 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 7.62 71.98 0.55 -2.44 16 2 C 0.13 2.26 3.65 45.03 0.16 2.43 16 3 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 4 C 0.10 1.11 5.81 86.41 0.50 1.61 16 5 N -0.61 -8.69 2.96 -817.94 -2.42 -11.11 16 6 C 0.51 7.04 7.70 87.66 0.67 7.71 16 7 O -0.59 -13.65 15.39 -3.02 -0.05 -13.70 16 8 C -0.13 -0.28 4.04 29.85 0.12 -0.16 16 9 C -0.10 -0.50 4.46 30.59 0.14 -0.36 16 10 C -0.02 0.01 5.70 28.79 0.16 0.18 16 11 C 0.23 2.67 15.43 89.44 1.38 4.05 16 12 N -0.52 -10.88 18.54 20.01 0.37 -10.51 16 13 C 0.10 1.86 5.90 86.41 0.51 2.37 16 14 C 0.14 2.72 3.62 45.02 0.16 2.89 16 15 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 16 C -0.20 -4.05 7.08 71.98 0.51 -3.54 16 17 N -0.62 -15.47 2.95 -770.49 -2.27 -17.74 16 18 C 0.52 18.54 6.87 87.65 0.60 19.14 16 19 O -0.56 -24.45 11.84 -3.03 -0.04 -24.49 16 20 C -0.15 -5.59 3.25 29.85 0.10 -5.49 16 21 C 0.04 2.14 4.36 29.85 0.13 2.27 16 22 C -0.54 -29.97 9.11 25.60 0.23 -29.74 16 23 H 0.07 3.76 7.74 -2.91 -0.02 3.73 16 24 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 25 N -0.94 -58.42 13.29 21.45 0.28 -58.13 16 26 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 27 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 28 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 29 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 30 H 0.03 1.01 6.74 -2.39 -0.02 1.00 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.51 6.79 -2.38 -0.02 1.49 16 33 H 0.07 0.94 8.10 -2.39 -0.02 0.93 16 34 H 0.14 0.15 5.93 -2.39 -0.01 0.14 16 35 H 0.13 -0.50 7.92 -2.39 -0.02 -0.52 16 36 H 0.14 -0.52 7.72 -2.39 -0.02 -0.54 16 37 H 0.06 0.57 8.10 -2.38 -0.02 0.55 16 38 H 0.06 0.56 8.10 -2.38 -0.02 0.54 16 39 H 0.15 -0.99 8.14 -2.39 -0.02 -1.01 16 40 H 0.15 -0.98 8.14 -2.39 -0.02 -1.00 16 41 H 0.10 1.89 6.99 -2.39 -0.02 1.87 16 42 H 0.07 1.29 8.11 -2.39 -0.02 1.27 16 43 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 44 H 0.09 2.20 4.54 -2.39 -0.01 2.19 16 45 H 0.07 1.58 5.75 -2.38 -0.01 1.57 16 46 H 0.13 4.39 4.56 -2.39 -0.01 4.38 16 47 H 0.10 3.46 6.32 -2.39 -0.02 3.45 16 48 H -0.02 -1.52 8.14 -2.38 -0.02 -1.54 16 49 H -0.02 -1.05 7.96 -2.39 -0.02 -1.07 16 50 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -89.98 392.55 5.25 -84.72 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 0.94 Total: 4.24 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 6.40 Total: 1.09 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -4.03 Total: -97.49 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.08 Total: -38.19 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -89.98 5.25 -84.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291715833.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.585 kcal (2) G-P(sol) polarization free energy of solvation -89.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds