Wall clock time and date at job start Tue Mar 31 2020 18:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.50664 * 2 1 4 4 C 1.53094 * 109.50934 * 120.08488 * 2 1 3 5 5 N 1.47011 * 109.25755 * 63.08567 * 4 2 1 6 6 C 1.46902 * 110.99905 * 182.39307 * 5 4 2 7 7 C 1.50703 * 109.47092 * 66.04900 * 6 5 4 8 8 O 1.21281 * 119.99837 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00021 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99786 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.46992 * 90.00095 * 10 9 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99594 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99875 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47061 * 90.00257 * 15 13 11 17 17 H 1.48497 * 109.46906 * 209.99430 * 15 13 11 18 18 H 1.48498 * 109.47403 * 329.99876 * 15 13 11 19 19 C 1.46504 * 119.99832 * 0.02562 * 9 7 6 20 20 C 1.53002 * 109.46810 * 269.99624 * 19 9 7 21 21 C 1.47198 * 109.46913 * 180.02562 * 20 19 9 22 22 N 9.06218 * 102.34435 * 144.19994 * 2 1 3 23 23 C 1.47010 * 110.75073 * 58.62030 * 5 4 2 24 24 C 1.53098 * 109.25911 * 301.38179 * 23 5 4 25 25 H 1.08997 * 109.50215 * 296.91631 * 24 23 5 26 26 C 1.53002 * 109.54420 * 176.80441 * 24 23 5 27 27 C 1.52999 * 117.49984 * 248.94502 * 26 24 23 28 28 C 1.52995 * 117.49993 * 180.28026 * 26 24 23 29 29 O 1.43012 * 109.25687 * 56.85111 * 24 23 5 30 30 H 1.08999 * 109.47503 * 299.91374 * 1 2 3 31 31 H 1.08998 * 109.46912 * 59.91846 * 1 2 3 32 32 H 1.09000 * 109.46936 * 179.91586 * 1 2 3 33 33 H 1.09005 * 109.50237 * 303.15405 * 4 2 1 34 34 H 1.09005 * 109.50922 * 183.02702 * 4 2 1 35 35 H 1.09000 * 109.47155 * 306.05010 * 6 5 4 36 36 H 1.08999 * 109.47484 * 186.04605 * 6 5 4 37 37 H 1.09002 * 109.47391 * 330.00086 * 10 9 7 38 38 H 1.09001 * 109.46813 * 210.00142 * 10 9 7 39 39 H 0.97002 * 119.99739 * 180.02562 * 14 13 11 40 40 H 1.08992 * 109.47334 * 29.99480 * 19 9 7 41 41 H 1.08994 * 109.46680 * 150.00103 * 19 9 7 42 42 H 1.09000 * 109.47431 * 300.00525 * 20 19 9 43 43 H 1.09004 * 109.47052 * 59.99943 * 20 19 9 44 44 H 1.09004 * 109.50978 * 61.31885 * 23 5 4 45 45 H 1.09007 * 109.50742 * 181.44623 * 23 5 4 46 46 H 1.09003 * 115.54667 * 34.61235 * 26 24 23 47 47 H 1.08994 * 117.49759 * 359.97438 * 27 26 24 48 48 H 1.09000 * 117.49576 * 145.02443 * 27 26 24 49 49 H 1.09001 * 117.49978 * 214.97934 * 28 26 24 50 50 H 1.09000 * 117.49814 * 0.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7234 1.2486 5 7 1.6110 -2.1285 1.2053 6 6 2.0337 -2.8460 2.4155 7 6 1.3075 -2.2855 3.6112 8 8 0.5156 -1.3780 3.4691 9 7 1.5375 -2.7934 4.8383 10 6 0.8320 -2.2481 6.0007 11 6 -0.4564 -3.0025 6.2057 12 1 -0.7228 -3.8079 5.5373 13 6 -1.2945 -2.6652 7.2473 14 7 -2.4185 -3.3239 7.4265 15 14 -0.8332 -1.2727 8.4038 16 1 -1.3767 0.0063 7.8801 17 1 -1.4022 -1.5380 9.7495 18 1 0.6456 -1.1793 8.5012 19 6 2.4937 -3.8900 5.0097 20 6 1.7649 -5.2283 4.8725 21 6 2.7255 -6.3301 5.0454 22 7 3.4673 -7.1801 5.1784 23 6 2.1186 -2.7915 -0.0046 24 6 1.6066 -2.0474 -1.2408 25 1 0.5189 -2.1070 -1.2768 26 6 2.1953 -2.6838 -2.5015 27 6 3.2170 -1.8663 -3.2944 28 6 1.8053 -2.0732 -3.8491 29 8 2.0076 -0.6767 -1.1659 30 1 -0.3634 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6331 -0.2450 2.1391 34 1 3.1300 -0.6767 1.2763 35 1 3.1081 -2.7247 2.5532 36 1 1.7980 -3.9051 2.3110 37 1 0.6127 -1.1939 5.8310 38 1 1.4583 -2.3509 6.8868 39 1 -3.0084 -3.0864 8.1590 40 1 3.2690 -3.8186 4.2470 41 1 2.9489 -3.8238 5.9979 42 1 0.9895 -5.2996 5.6352 43 1 1.3096 -5.2943 3.8843 44 1 3.2085 -2.7780 0.0029 45 1 1.7670 -3.8230 -0.0291 46 1 2.3374 -3.7637 -2.4606 47 1 3.4695 -0.8750 -2.9181 48 1 4.0311 -2.4085 -3.7755 49 1 1.6914 -2.7513 -4.6948 50 1 1.1297 -1.2179 -3.8375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369389507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:06 Heat of formation + Delta-G solvation = -9.721397 kcal Electronic energy + Delta-G solvation = -30065.614779 eV Core-core repulsion = 26094.572588 eV Total energy + Delta-G solvation = -3971.042191 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.40227 -39.23745 -37.11190 -36.74176 -35.59920 -35.08572 -32.77708 -31.97419 -30.94864 -29.96053 -28.42092 -26.98271 -25.10960 -23.98735 -23.42432 -22.52215 -22.19249 -20.90251 -19.30300 -18.65445 -17.66104 -16.93005 -16.86411 -16.67585 -16.12076 -15.65104 -15.58769 -15.10046 -14.90224 -14.60336 -14.49728 -14.40975 -13.85527 -13.76364 -13.64999 -13.29683 -12.90899 -12.63757 -12.53252 -12.43801 -12.31624 -12.07308 -11.88052 -11.76531 -11.64331 -11.63273 -11.50146 -11.35443 -11.21785 -11.02647 -10.78027 -10.72350 -10.58394 -10.45000 -10.21333 -10.11323 -9.65350 -9.55257 -9.05319 -8.65265 -8.29515 -7.93241 -6.15500 -4.15085 2.78757 2.90854 3.19097 3.24158 3.29323 3.31882 3.38024 3.50127 3.72726 3.88863 4.26075 4.33694 4.48622 4.71143 4.80180 4.81993 4.87921 4.98992 5.06257 5.07131 5.13833 5.16548 5.22235 5.23501 5.32098 5.35692 5.37371 5.40138 5.50888 5.54529 5.66465 5.72958 5.83591 5.87269 5.88614 5.95297 6.02354 6.06765 6.15310 6.18767 6.47374 6.54540 6.78802 6.89210 6.95191 7.17417 7.19780 7.52435 7.66266 8.05241 8.37611 8.82015 8.87862 9.44678 10.97209 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.003273 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.332397 B = 8551.869376 C =10156.874121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.094 3.906 3 H 0.102 0.898 4 C 0.019 3.981 5 N -0.513 5.513 6 C 0.035 3.965 7 C 0.512 3.488 8 O -0.512 6.512 9 N -0.595 5.595 10 C 0.216 3.784 11 C -0.531 4.531 12 H 0.079 0.921 13 C 0.075 3.925 14 N -0.894 5.894 15 Si 0.873 3.127 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.266 1.266 19 C 0.124 3.876 20 C -0.054 4.054 21 C 0.219 3.781 22 N -0.453 5.453 23 C 0.028 3.972 24 C 0.123 3.877 25 H 0.075 0.925 26 C -0.154 4.154 27 C -0.166 4.166 28 C -0.173 4.173 29 O -0.378 6.378 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.033 0.967 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.038 0.962 38 H 0.031 0.969 39 H 0.265 0.735 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.135 0.865 43 H 0.106 0.894 44 H 0.042 0.958 45 H 0.085 0.915 46 H 0.114 0.886 47 H 0.105 0.895 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.222 2.728 -16.862 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.037 3.963 3 H 0.120 0.880 4 C -0.109 4.109 5 N -0.238 5.238 6 C -0.096 4.096 7 C 0.298 3.702 8 O -0.387 6.387 9 N -0.328 5.328 10 C 0.095 3.905 11 C -0.570 4.570 12 H 0.097 0.903 13 C -0.128 4.128 14 N -0.532 5.532 15 Si 0.700 3.300 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.191 1.191 19 C -0.003 4.003 20 C -0.095 4.095 21 C -0.099 4.099 22 N -0.130 5.130 23 C -0.100 4.100 24 C 0.065 3.935 25 H 0.093 0.907 26 C -0.173 4.173 27 C -0.203 4.203 28 C -0.210 4.210 29 O -0.298 6.298 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.127 0.873 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.153 0.847 43 H 0.124 0.876 44 H 0.060 0.940 45 H 0.103 0.897 46 H 0.132 0.868 47 H 0.123 0.877 48 H 0.106 0.894 49 H 0.110 0.890 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.322 2.046 -16.755 20.325 hybrid contribution 0.454 0.620 1.030 1.285 sum 11.776 2.666 -15.725 19.826 Atomic orbital electron populations 1.22228 0.95074 1.03712 1.01857 1.22229 0.94811 0.95475 0.83794 0.88045 1.22989 0.97566 0.89303 1.01021 1.61808 1.59497 1.02008 1.00492 1.22117 0.97863 0.99669 0.89995 1.20148 0.82914 0.83652 0.83499 1.90653 1.34353 1.29369 1.84303 1.47927 1.42415 1.34184 1.08260 1.19730 0.92734 0.95733 0.82274 1.21308 1.02909 1.18848 1.13901 0.90309 1.24841 0.94619 0.96048 0.97310 1.69883 1.11161 1.40839 1.31325 0.86901 0.79189 0.83307 0.80560 1.19964 1.21181 1.19086 1.21276 0.90805 0.84847 1.03331 1.20003 0.95210 0.87561 1.06770 1.29278 0.93780 0.94236 0.92566 1.81186 1.10916 1.11171 1.09775 1.22761 0.98135 0.98910 0.90183 1.21480 0.98595 0.81666 0.91766 0.90713 1.22272 1.05215 0.98562 0.91243 1.22859 0.92280 1.02304 1.02837 1.22927 0.98980 1.03212 0.95887 1.87965 1.75557 1.22821 1.43410 0.91094 0.93065 0.90917 0.87275 0.94867 0.92384 0.88069 0.94389 0.95100 0.92504 0.90877 0.89489 0.84738 0.87624 0.94022 0.89700 0.86781 0.87693 0.89358 0.89020 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 8.89 37.16 0.33 -1.80 16 2 C 0.09 1.12 3.92 -26.68 -0.10 1.01 16 3 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.02 0.25 4.70 -3.71 -0.02 0.23 16 5 N -0.51 -6.64 3.83 -235.75 -0.90 -7.54 16 6 C 0.03 0.43 4.00 -4.97 -0.02 0.41 16 7 C 0.51 8.70 7.38 -10.98 -0.08 8.62 16 8 O -0.51 -10.83 13.90 5.56 0.08 -10.75 16 9 N -0.60 -10.01 2.46 -175.06 -0.43 -10.44 16 10 C 0.22 4.57 4.27 -5.19 -0.02 4.55 16 11 C -0.53 -13.49 9.48 -34.44 -0.33 -13.82 16 12 H 0.08 2.15 7.67 -52.49 -0.40 1.75 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 14 N -0.89 -25.89 13.96 55.43 0.77 -25.11 16 15 Si 0.87 20.21 27.47 -169.99 -4.67 15.55 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -5.74 6.54 56.52 0.37 -5.37 16 19 C 0.12 1.52 5.21 -4.04 -0.02 1.50 16 20 C -0.05 -0.66 6.03 -29.52 -0.18 -0.83 16 21 C 0.22 2.85 15.43 -20.76 -0.32 2.53 16 22 N -0.45 -6.94 18.54 42.15 0.78 -6.16 16 23 C 0.03 0.30 4.92 -3.71 -0.02 0.28 16 24 C 0.12 1.30 2.76 -26.68 -0.07 1.23 16 25 H 0.08 0.86 6.49 -51.93 -0.34 0.53 16 26 C -0.15 -1.37 5.71 -90.62 -0.52 -1.88 16 27 C -0.17 -1.43 9.88 -26.69 -0.26 -1.70 16 28 C -0.17 -1.44 10.19 -26.69 -0.27 -1.71 16 29 O -0.38 -4.44 8.64 -35.23 -0.30 -4.74 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.00 6.12 -51.93 -0.32 0.69 16 33 H 0.11 1.67 5.85 -51.93 -0.30 1.37 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.61 7.38 -51.93 -0.38 0.23 16 36 H 0.10 1.08 7.09 -51.93 -0.37 0.71 16 37 H 0.04 0.88 6.85 -51.93 -0.36 0.53 16 38 H 0.03 0.63 6.95 -51.93 -0.36 0.27 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.07 0.69 6.44 -51.93 -0.33 0.35 16 41 H 0.09 1.02 7.89 -51.93 -0.41 0.61 16 42 H 0.13 1.96 7.27 -51.93 -0.38 1.58 16 43 H 0.11 1.13 7.22 -51.93 -0.37 0.76 16 44 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 46 H 0.11 0.86 8.12 -51.93 -0.42 0.44 16 47 H 0.10 1.04 7.06 -51.93 -0.37 0.67 16 48 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 397.73 15.07 5.99 5.99 Total: -1.00 -31.60 397.73 -8.77 -40.37 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.08 Total: 2.32 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -2.00 Total: 0.52 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.22 Total: -49.26 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.23 Total: -15.49 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.55 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.60 -8.77 -40.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369389507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.648 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds