Wall clock time and date at job start Tue Mar 31 2020 18:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.50664 * 2 1 4 4 C 1.53094 * 109.50934 * 120.08488 * 2 1 3 5 5 N 1.47011 * 109.25755 * 63.08567 * 4 2 1 6 6 C 1.46902 * 110.99905 * 182.39307 * 5 4 2 7 7 C 1.50703 * 109.47092 * 66.04900 * 6 5 4 8 8 O 1.21281 * 119.99837 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00021 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99786 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.46992 * 90.00095 * 10 9 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99594 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99875 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47061 * 90.00257 * 15 13 11 17 17 H 1.48497 * 109.46906 * 209.99430 * 15 13 11 18 18 H 1.48498 * 109.47403 * 329.99876 * 15 13 11 19 19 C 1.46504 * 119.99832 * 0.02562 * 9 7 6 20 20 C 1.53002 * 109.46810 * 269.99624 * 19 9 7 21 21 C 1.47198 * 109.46913 * 180.02562 * 20 19 9 22 22 N 9.06218 * 102.34435 * 144.19994 * 2 1 3 23 23 C 1.47010 * 110.75073 * 58.62030 * 5 4 2 24 24 C 1.53098 * 109.25911 * 301.38179 * 23 5 4 25 25 H 1.08997 * 109.50215 * 296.91631 * 24 23 5 26 26 C 1.53002 * 109.54420 * 176.80441 * 24 23 5 27 27 C 1.52999 * 117.49984 * 248.94502 * 26 24 23 28 28 C 1.52995 * 117.49993 * 180.28026 * 26 24 23 29 29 O 1.43012 * 109.25687 * 56.85111 * 24 23 5 30 30 H 1.08999 * 109.47503 * 299.91374 * 1 2 3 31 31 H 1.08998 * 109.46912 * 59.91846 * 1 2 3 32 32 H 1.09000 * 109.46936 * 179.91586 * 1 2 3 33 33 H 1.09005 * 109.50237 * 303.15405 * 4 2 1 34 34 H 1.09005 * 109.50922 * 183.02702 * 4 2 1 35 35 H 1.09000 * 109.47155 * 306.05010 * 6 5 4 36 36 H 1.08999 * 109.47484 * 186.04605 * 6 5 4 37 37 H 1.09002 * 109.47391 * 330.00086 * 10 9 7 38 38 H 1.09001 * 109.46813 * 210.00142 * 10 9 7 39 39 H 0.97002 * 119.99739 * 180.02562 * 14 13 11 40 40 H 1.08992 * 109.47334 * 29.99480 * 19 9 7 41 41 H 1.08994 * 109.46680 * 150.00103 * 19 9 7 42 42 H 1.09000 * 109.47431 * 300.00525 * 20 19 9 43 43 H 1.09004 * 109.47052 * 59.99943 * 20 19 9 44 44 H 1.09004 * 109.50978 * 61.31885 * 23 5 4 45 45 H 1.09007 * 109.50742 * 181.44623 * 23 5 4 46 46 H 1.09003 * 115.54667 * 34.61235 * 26 24 23 47 47 H 1.08994 * 117.49759 * 359.97438 * 27 26 24 48 48 H 1.09000 * 117.49576 * 145.02443 * 27 26 24 49 49 H 1.09001 * 117.49978 * 214.97934 * 28 26 24 50 50 H 1.09000 * 117.49814 * 0.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7234 1.2486 5 7 1.6110 -2.1285 1.2053 6 6 2.0337 -2.8460 2.4155 7 6 1.3075 -2.2855 3.6112 8 8 0.5156 -1.3780 3.4691 9 7 1.5375 -2.7934 4.8383 10 6 0.8320 -2.2481 6.0007 11 6 -0.4564 -3.0025 6.2057 12 1 -0.7228 -3.8079 5.5373 13 6 -1.2945 -2.6652 7.2473 14 7 -2.4185 -3.3239 7.4265 15 14 -0.8332 -1.2727 8.4038 16 1 -1.3767 0.0063 7.8801 17 1 -1.4022 -1.5380 9.7495 18 1 0.6456 -1.1793 8.5012 19 6 2.4937 -3.8900 5.0097 20 6 1.7649 -5.2283 4.8725 21 6 2.7255 -6.3301 5.0454 22 7 3.4673 -7.1801 5.1784 23 6 2.1186 -2.7915 -0.0046 24 6 1.6066 -2.0474 -1.2408 25 1 0.5189 -2.1070 -1.2768 26 6 2.1953 -2.6838 -2.5015 27 6 3.2170 -1.8663 -3.2944 28 6 1.8053 -2.0732 -3.8491 29 8 2.0076 -0.6767 -1.1659 30 1 -0.3634 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6331 -0.2450 2.1391 34 1 3.1300 -0.6767 1.2763 35 1 3.1081 -2.7247 2.5532 36 1 1.7980 -3.9051 2.3110 37 1 0.6127 -1.1939 5.8310 38 1 1.4583 -2.3509 6.8868 39 1 -3.0084 -3.0864 8.1590 40 1 3.2690 -3.8186 4.2470 41 1 2.9489 -3.8238 5.9979 42 1 0.9895 -5.2996 5.6352 43 1 1.3096 -5.2943 3.8843 44 1 3.2085 -2.7780 0.0029 45 1 1.7670 -3.8230 -0.0291 46 1 2.3374 -3.7637 -2.4606 47 1 3.4695 -0.8750 -2.9181 48 1 4.0311 -2.4085 -3.7755 49 1 1.6914 -2.7513 -4.6948 50 1 1.1297 -1.2179 -3.8375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369389507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:05 Heat of formation + Delta-G solvation = -29.385160 kcal Electronic energy + Delta-G solvation = -30066.467464 eV Core-core repulsion = 26094.572588 eV Total energy + Delta-G solvation = -3971.894876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.40374 -40.41841 -38.06952 -37.70750 -36.75680 -36.23121 -34.69802 -32.87729 -32.28599 -31.04188 -29.79276 -28.21193 -26.11685 -25.11286 -24.55187 -23.64493 -23.16832 -21.74656 -20.19273 -19.90388 -19.19606 -18.26363 -18.00431 -17.81911 -17.09798 -16.92503 -16.51467 -16.18385 -15.93909 -15.86924 -15.62956 -15.41914 -15.18090 -14.78760 -14.70471 -14.51922 -14.26881 -13.97900 -13.72331 -13.56640 -13.51511 -13.35964 -13.06527 -12.86384 -12.78533 -12.69242 -12.57378 -12.41525 -12.31511 -12.17409 -12.08232 -11.91272 -11.82177 -11.55124 -11.50401 -11.18151 -10.93491 -10.71977 -10.64110 -10.23525 -9.42011 -9.21786 -8.22622 -6.24737 1.39474 1.43201 1.49252 1.67753 1.84682 1.95972 2.18068 2.39088 2.70928 2.83302 3.05129 3.13174 3.16831 3.68577 3.79620 3.91502 4.00936 4.08121 4.09386 4.14575 4.18230 4.27108 4.29578 4.35484 4.43503 4.45030 4.51852 4.58278 4.63752 4.77169 4.83239 4.85751 4.89406 4.91977 4.97407 5.02163 5.06882 5.08331 5.14623 5.17477 5.32457 5.40811 5.45370 5.56555 5.69419 5.90434 6.04069 6.30668 6.35577 6.60973 6.74888 6.79625 7.35456 7.54126 8.93076 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.003273 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.332397 B = 8551.869376 C =10156.874121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 H 0.114 0.886 4 C 0.025 3.975 5 N -0.535 5.535 6 C 0.043 3.957 7 C 0.505 3.495 8 O -0.562 6.562 9 N -0.598 5.598 10 C 0.222 3.778 11 C -0.520 4.520 12 H 0.049 0.951 13 C 0.014 3.986 14 N -0.945 5.945 15 Si 0.933 3.067 16 H -0.282 1.282 17 H -0.286 1.286 18 H -0.236 1.236 19 C 0.119 3.881 20 C -0.043 4.043 21 C 0.247 3.753 22 N -0.488 5.488 23 C 0.033 3.967 24 C 0.119 3.881 25 H 0.060 0.940 26 C -0.156 4.156 27 C -0.165 4.165 28 C -0.173 4.173 29 O -0.381 6.381 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.089 0.911 36 H 0.126 0.874 37 H 0.019 0.981 38 H 0.051 0.949 39 H 0.264 0.736 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.124 0.876 44 H 0.051 0.949 45 H 0.101 0.899 46 H 0.133 0.867 47 H 0.090 0.910 48 H 0.104 0.896 49 H 0.108 0.892 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.035 2.369 -18.040 22.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.132 0.868 4 C -0.103 4.103 5 N -0.260 5.260 6 C -0.087 4.087 7 C 0.293 3.707 8 O -0.440 6.440 9 N -0.329 5.329 10 C 0.100 3.900 11 C -0.559 4.559 12 H 0.067 0.933 13 C -0.184 4.184 14 N -0.586 5.586 15 Si 0.758 3.242 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.159 1.159 19 C -0.005 4.005 20 C -0.084 4.084 21 C -0.070 4.070 22 N -0.166 5.166 23 C -0.095 4.095 24 C 0.061 3.939 25 H 0.078 0.922 26 C -0.174 4.174 27 C -0.202 4.202 28 C -0.210 4.210 29 O -0.301 6.301 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.107 0.893 36 H 0.143 0.857 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.126 0.874 43 H 0.142 0.858 44 H 0.070 0.930 45 H 0.119 0.881 46 H 0.150 0.850 47 H 0.108 0.892 48 H 0.122 0.878 49 H 0.126 0.874 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.192 1.659 -17.948 22.941 hybrid contribution -0.472 0.706 1.305 1.557 sum 13.719 2.365 -16.643 21.698 Atomic orbital electron populations 1.22131 0.95982 1.02507 1.01455 1.22215 0.94014 0.96173 0.83729 0.86802 1.22840 0.97815 0.89543 1.00125 1.61744 1.60581 1.02153 1.01492 1.22111 0.98687 1.00277 0.87629 1.21038 0.82331 0.82795 0.84488 1.90641 1.36675 1.31614 1.85102 1.47895 1.42635 1.35192 1.07186 1.19391 0.91620 0.94161 0.84817 1.21611 1.04344 1.17643 1.12312 0.93311 1.25690 0.94643 0.98615 0.99478 1.70034 1.12813 1.43200 1.32557 0.85934 0.80639 0.79530 0.78132 1.20847 1.21227 1.15873 1.21581 0.90423 0.82986 1.05530 1.19870 0.94277 0.87370 1.06910 1.29155 0.92892 0.93555 0.91359 1.81231 1.12167 1.12208 1.11029 1.22795 0.98601 0.99343 0.88743 1.21565 0.98019 0.81297 0.92977 0.92166 1.22326 1.05282 0.99362 0.90440 1.22860 0.92806 1.01717 1.02809 1.22972 0.98631 1.03125 0.96293 1.87975 1.75426 1.23584 1.43102 0.92803 0.92027 0.92489 0.90050 0.93902 0.89334 0.85662 0.96318 0.93125 0.92745 0.86784 0.88562 0.87367 0.85821 0.93041 0.88096 0.84964 0.89180 0.87786 0.87411 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.15 8.89 71.98 0.64 -3.51 16 2 C 0.10 2.22 3.92 30.62 0.12 2.34 16 3 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.02 0.62 4.70 86.31 0.41 1.02 16 5 N -0.53 -12.84 3.83 -899.77 -3.45 -16.29 16 6 C 0.04 0.95 4.00 85.56 0.34 1.29 16 7 C 0.51 16.54 7.38 87.66 0.65 17.19 16 8 O -0.56 -24.13 13.90 -3.03 -0.04 -24.17 16 9 N -0.60 -19.07 2.46 -826.15 -2.03 -21.10 16 10 C 0.22 9.24 4.27 85.63 0.37 9.61 16 11 C -0.52 -26.80 9.48 25.60 0.24 -26.56 16 12 H 0.05 2.74 7.67 -2.91 -0.02 2.72 16 13 C 0.01 0.74 5.47 84.66 0.46 1.21 16 14 N -0.95 -56.51 13.96 21.45 0.30 -56.21 16 15 Si 0.93 41.83 27.47 68.60 1.88 43.71 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 17 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.24 -9.30 6.54 99.48 0.65 -8.65 16 19 C 0.12 2.54 5.21 86.38 0.45 2.99 16 20 C -0.04 -0.94 6.03 28.79 0.17 -0.77 16 21 C 0.25 5.83 15.43 89.44 1.38 7.22 16 22 N -0.49 -13.98 18.54 20.01 0.37 -13.61 16 23 C 0.03 0.60 4.92 86.31 0.42 1.02 16 24 C 0.12 2.33 2.76 30.63 0.08 2.41 16 25 H 0.06 1.35 6.49 -2.39 -0.02 1.34 16 26 C -0.16 -2.37 5.71 -10.80 -0.06 -2.44 16 27 C -0.17 -2.48 9.88 30.62 0.30 -2.18 16 28 C -0.17 -2.56 10.19 30.62 0.31 -2.24 16 29 O -0.38 -8.46 8.64 -148.98 -1.29 -9.75 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.61 6.12 -2.39 -0.01 1.60 16 33 H 0.08 2.52 5.85 -2.38 -0.01 2.50 16 34 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.09 1.45 7.38 -2.39 -0.02 1.43 16 36 H 0.13 2.15 7.09 -2.39 -0.02 2.13 16 37 H 0.02 0.86 6.85 -2.39 -0.02 0.85 16 38 H 0.05 1.93 6.95 -2.39 -0.02 1.91 16 39 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 40 H 0.11 1.57 6.44 -2.39 -0.02 1.55 16 41 H 0.10 1.93 7.89 -2.39 -0.02 1.91 16 42 H 0.11 3.09 7.27 -2.39 -0.02 3.07 16 43 H 0.12 2.30 7.22 -2.39 -0.02 2.28 16 44 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.10 1.52 8.09 -2.38 -0.02 1.50 16 46 H 0.13 1.54 8.12 -2.39 -0.02 1.52 16 47 H 0.09 1.64 7.06 -2.39 -0.02 1.63 16 48 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -71.79 397.73 2.92 -68.88 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.88 Total: 19.94 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 6.29 Total: 8.60 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -4.81 Total: -107.20 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -1.33 Total: -33.93 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.88 Total: 43.71 kcal Total: -71.79 2.92 -68.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369389507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.490 kcal (2) G-P(sol) polarization free energy of solvation -71.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds