Wall clock time and date at job start Tue Mar 31 2020 18:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.50789 * 2 1 4 4 C 1.53097 * 109.50950 * 120.08517 * 2 1 3 5 5 N 1.47020 * 109.26166 * 176.78309 * 4 2 1 6 6 C 1.46898 * 110.99823 * 177.60685 * 5 4 2 7 7 C 1.50702 * 109.46571 * 189.99911 * 6 5 4 8 8 O 1.21278 * 120.00165 * 6.25996 * 7 6 5 9 9 N 1.34782 * 119.99701 * 186.26268 * 7 6 5 10 10 C 1.46501 * 119.99940 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47266 * 89.99756 * 10 9 7 12 12 H 1.08001 * 119.99846 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00043 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00140 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00095 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47184 * 59.99775 * 15 13 11 17 17 H 1.48495 * 109.47172 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47230 * 300.00091 * 15 13 11 19 19 C 1.46495 * 120.00264 * 0.02562 * 9 7 6 20 20 C 1.52993 * 109.47241 * 89.99677 * 19 9 7 21 21 C 1.47206 * 109.47141 * 180.02562 * 20 19 9 22 22 N 8.47948 * 109.26897 * 134.65774 * 2 1 3 23 23 C 1.47008 * 110.74862 * 301.38671 * 5 4 2 24 24 C 1.53093 * 109.26147 * 58.61407 * 23 5 4 25 25 H 1.09005 * 109.50845 * 63.12974 * 24 23 5 26 26 C 1.52999 * 109.50763 * 183.21055 * 24 23 5 27 27 C 1.53003 * 117.51729 * 116.28412 * 26 24 23 28 28 C 1.53001 * 60.00039 * 107.48556 * 27 26 24 29 29 O 1.43012 * 109.26188 * 303.14782 * 24 23 5 30 30 H 1.08999 * 109.46925 * 299.91371 * 1 2 3 31 31 H 1.08996 * 109.47292 * 59.91732 * 1 2 3 32 32 H 1.09000 * 109.47169 * 179.91589 * 1 2 3 33 33 H 1.09004 * 109.50951 * 56.84983 * 4 2 1 34 34 H 1.09005 * 109.54320 * 296.74048 * 4 2 1 35 35 H 1.08998 * 109.47355 * 309.99560 * 6 5 4 36 36 H 1.08994 * 109.47266 * 70.00195 * 6 5 4 37 37 H 1.09000 * 109.47168 * 210.00440 * 10 9 7 38 38 H 1.09009 * 109.46860 * 330.00097 * 10 9 7 39 39 H 0.96992 * 120.00381 * 179.97438 * 14 13 11 40 40 H 1.09002 * 109.47446 * 210.00401 * 19 9 7 41 41 H 1.09008 * 109.46946 * 329.99980 * 19 9 7 42 42 H 1.08997 * 109.47437 * 299.99947 * 20 19 9 43 43 H 1.09000 * 109.47514 * 60.00323 * 20 19 9 44 44 H 1.08997 * 109.50956 * 298.67386 * 23 5 4 45 45 H 1.09009 * 109.50211 * 178.55060 * 23 5 4 46 46 H 1.09004 * 115.55446 * 330.58967 * 26 24 23 47 47 H 1.08999 * 117.50035 * 214.97544 * 27 26 24 48 48 H 1.09004 * 117.49762 * 359.97438 * 27 26 24 49 49 H 1.09003 * 117.49094 * 252.51291 * 28 27 26 50 50 H 1.08998 * 117.51705 * 107.48746 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7234 1.2487 5 7 3.5094 -0.7880 1.2048 6 6 4.0446 -1.4259 2.4149 7 6 5.5416 -1.2563 2.4517 8 8 6.0945 -0.5673 1.6208 9 7 6.2660 -1.8703 3.4082 10 6 7.7212 -1.7051 3.4444 11 6 8.0704 -0.5137 4.2987 12 1 7.2867 0.0624 4.7681 13 6 9.3904 -0.1599 4.4819 14 7 10.3447 -0.8618 3.9108 15 14 9.8232 1.3164 5.5414 16 1 9.3145 1.1025 6.9200 17 1 11.2982 1.4839 5.5780 18 1 9.2009 2.5368 4.9679 19 6 5.5982 -2.7030 4.4116 20 6 5.5178 -4.1448 3.9062 21 6 4.8462 -4.9814 4.9142 22 7 4.3282 -5.6261 5.6937 23 6 3.9639 -1.4884 -0.0052 24 6 3.4334 -0.7573 -1.2413 25 1 3.8540 0.2477 -1.2783 26 6 3.8358 -1.5261 -2.5014 27 6 2.7135 -2.1124 -3.3604 28 6 3.4971 -0.8940 -3.8530 29 8 2.0075 -0.6767 -1.1660 30 1 -0.3633 0.5125 0.8908 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6332 -1.7338 1.2767 34 1 1.7273 -0.1793 2.1395 35 1 3.6044 -0.9598 3.2964 36 1 3.7994 -2.4878 2.4046 37 1 8.1782 -2.6006 3.8654 38 1 8.0943 -1.5482 2.4323 39 1 11.2732 -0.6127 4.0393 40 1 6.1649 -2.6753 5.3423 41 1 4.5918 -2.3231 4.5876 42 1 4.9510 -4.1726 2.9756 43 1 6.5241 -4.5249 3.7301 44 1 3.5867 -2.5109 0.0027 45 1 5.0536 -1.5020 -0.0301 46 1 4.7635 -2.0938 -2.4297 47 1 2.9030 -3.0657 -3.8537 48 1 1.6882 -1.9508 -3.0275 49 1 2.9871 0.0693 -3.8444 50 1 4.2021 -1.0455 -4.6704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369389510.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:15 Heat of formation + Delta-G solvation = -17.496294 kcal Electronic energy + Delta-G solvation = -29835.632213 eV Core-core repulsion = 25864.252878 eV Total energy + Delta-G solvation = -3971.379336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.24054 -39.09043 -37.05869 -36.83408 -35.58186 -35.01047 -32.89631 -32.55082 -30.86678 -29.70306 -28.13850 -26.75311 -24.96726 -24.04231 -23.28357 -22.46743 -22.06722 -20.79865 -20.20912 -18.51840 -17.64771 -16.88493 -16.46851 -16.43570 -16.18601 -15.80776 -15.50871 -15.30649 -14.83737 -14.66117 -14.50475 -14.36474 -14.06215 -13.61245 -13.50433 -13.13078 -12.90083 -12.62603 -12.55032 -12.47926 -12.42411 -12.15830 -11.94517 -11.81889 -11.68350 -11.56112 -11.29572 -11.27721 -11.19498 -11.02745 -10.87683 -10.75158 -10.61658 -10.38196 -10.19757 -10.13918 -9.72744 -9.55537 -8.97801 -8.47574 -8.31041 -7.84743 -6.09460 -4.14033 2.68515 2.76774 3.26993 3.30293 3.34920 3.37415 3.41744 3.46889 3.77744 3.86506 4.20119 4.41471 4.56559 4.72113 4.81783 4.89189 4.92616 4.95398 5.04406 5.04810 5.09371 5.21665 5.23567 5.24804 5.27373 5.37198 5.40134 5.41962 5.44548 5.50910 5.60504 5.61338 5.74996 5.78644 5.79919 5.94426 5.98432 6.02680 6.04853 6.08825 6.20148 6.75626 6.92587 7.00518 7.20245 7.33917 7.42025 7.53369 7.86647 8.16414 8.24479 8.83750 8.99001 9.51614 10.98626 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009520 B = 0.003310 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.486233 B = 8456.543431 C = 9740.183021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.091 3.909 3 H 0.067 0.933 4 C 0.024 3.976 5 N -0.518 5.518 6 C 0.034 3.966 7 C 0.508 3.492 8 O -0.512 6.512 9 N -0.599 5.599 10 C 0.247 3.753 11 C -0.529 4.529 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.118 3.882 20 C -0.050 4.050 21 C 0.216 3.784 22 N -0.445 5.445 23 C 0.027 3.973 24 C 0.128 3.872 25 H 0.073 0.927 26 C -0.152 4.152 27 C -0.165 4.165 28 C -0.174 4.174 29 O -0.380 6.380 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.056 0.944 37 H 0.034 0.966 38 H 0.046 0.954 39 H 0.264 0.736 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.118 0.882 44 H 0.037 0.963 45 H 0.105 0.895 46 H 0.116 0.884 47 H 0.088 0.912 48 H 0.104 0.896 49 H 0.094 0.906 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.273 -3.078 -9.411 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.034 3.966 3 H 0.085 0.915 4 C -0.104 4.104 5 N -0.243 5.243 6 C -0.097 4.097 7 C 0.294 3.706 8 O -0.387 6.387 9 N -0.332 5.332 10 C 0.128 3.872 11 C -0.568 4.568 12 H 0.076 0.924 13 C -0.139 4.139 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.008 4.008 20 C -0.092 4.092 21 C -0.102 4.102 22 N -0.122 5.122 23 C -0.101 4.101 24 C 0.071 3.929 25 H 0.091 0.909 26 C -0.170 4.170 27 C -0.202 4.202 28 C -0.211 4.211 29 O -0.300 6.300 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.136 0.864 44 H 0.055 0.945 45 H 0.123 0.877 46 H 0.134 0.866 47 H 0.107 0.893 48 H 0.122 0.878 49 H 0.112 0.888 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.450 -3.263 -8.874 19.847 hybrid contribution 0.486 0.249 0.762 0.937 sum -16.964 -3.014 -8.112 19.044 Atomic orbital electron populations 1.21732 0.92937 1.02777 1.02558 1.22081 0.94440 0.95851 0.84276 0.91484 1.22847 0.87892 1.00097 0.99564 1.61794 1.07745 1.53228 1.01488 1.22137 0.94995 0.98216 0.94326 1.20145 0.88072 0.80477 0.81943 1.90678 1.72119 1.37389 1.38523 1.48238 1.10298 1.46847 1.27811 1.19325 0.72039 0.96907 0.98913 1.21378 0.92097 1.12962 1.30330 0.92432 1.24905 0.96235 0.96813 0.95951 1.69902 1.00099 1.39622 1.43669 0.86583 0.77215 0.83177 0.80607 1.20273 1.21215 1.20146 1.21286 0.98865 0.87023 0.93673 1.19908 1.01571 0.93933 0.93777 1.29128 0.93241 0.93676 0.94116 1.81232 1.10297 1.10219 1.10457 1.22867 1.03064 0.94928 0.89206 1.21486 0.80539 0.98637 0.92270 0.90936 1.22266 1.00403 1.03924 0.90446 1.22832 0.97762 0.96998 1.02643 1.22924 1.03557 0.97976 0.96611 1.87916 1.21162 1.78310 1.42567 0.90991 0.91674 0.91988 0.94079 0.89719 0.88123 0.92590 0.94804 0.93598 0.92621 0.88672 0.90845 0.87842 0.86417 0.94530 0.87711 0.86571 0.89334 0.87784 0.88768 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.57 37.15 0.36 -0.77 16 2 C 0.09 0.96 3.43 -26.68 -0.09 0.87 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 4 C 0.02 0.26 4.93 -3.71 -0.02 0.24 16 5 N -0.52 -7.05 4.42 -235.75 -1.04 -8.09 16 6 C 0.03 0.45 3.91 -4.98 -0.02 0.43 16 7 C 0.51 9.11 7.24 -10.98 -0.08 9.03 16 8 O -0.51 -11.55 14.26 5.56 0.08 -11.47 16 9 N -0.60 -10.64 2.46 -175.06 -0.43 -11.07 16 10 C 0.25 5.73 5.16 -5.19 -0.03 5.70 16 11 C -0.53 -13.98 9.39 -34.44 -0.32 -14.30 16 12 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 15 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.12 1.52 5.08 -4.05 -0.02 1.50 16 20 C -0.05 -0.51 5.97 -29.52 -0.18 -0.69 16 21 C 0.22 2.56 15.44 -20.74 -0.32 2.24 16 22 N -0.44 -6.44 18.54 42.17 0.78 -5.66 16 23 C 0.03 0.37 4.54 -3.72 -0.02 0.35 16 24 C 0.13 1.61 3.15 -26.68 -0.08 1.53 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 C -0.15 -1.67 5.74 -90.62 -0.52 -2.19 16 27 C -0.17 -1.62 9.87 -26.73 -0.26 -1.89 16 28 C -0.17 -1.70 10.24 -26.73 -0.27 -1.97 16 29 O -0.38 -4.55 8.48 -35.23 -0.30 -4.84 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 35 H 0.10 1.18 7.61 -51.93 -0.40 0.78 16 36 H 0.06 0.60 6.83 -51.93 -0.35 0.24 16 37 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 38 H 0.05 1.22 7.42 -51.92 -0.39 0.84 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 41 H 0.07 0.78 6.61 -51.92 -0.34 0.44 16 42 H 0.10 0.87 7.12 -51.93 -0.37 0.50 16 43 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.10 1.67 6.10 -51.92 -0.32 1.35 16 46 H 0.12 1.24 8.08 -51.93 -0.42 0.82 16 47 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.10 1.10 7.03 -51.93 -0.36 0.73 16 49 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 408.12 15.07 6.15 6.15 Total: -1.00 -32.34 408.12 -9.42 -41.77 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -8.40 Total: -0.03 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -1.98 Total: 1.72 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.05 Total: -49.42 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.22 Total: -16.32 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.34 -9.42 -41.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369389510.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.270 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds