Wall clock time and date at job start Tue Mar 31 2020 18:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.50789 * 2 1 4 4 C 1.53097 * 109.50950 * 120.08517 * 2 1 3 5 5 N 1.47020 * 109.26166 * 176.78309 * 4 2 1 6 6 C 1.46898 * 110.99823 * 177.60685 * 5 4 2 7 7 C 1.50702 * 109.46571 * 189.99911 * 6 5 4 8 8 O 1.21278 * 120.00165 * 6.25996 * 7 6 5 9 9 N 1.34782 * 119.99701 * 186.26268 * 7 6 5 10 10 C 1.46501 * 119.99940 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47266 * 89.99756 * 10 9 7 12 12 H 1.08001 * 119.99846 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00043 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00140 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00095 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47184 * 59.99775 * 15 13 11 17 17 H 1.48495 * 109.47172 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47230 * 300.00091 * 15 13 11 19 19 C 1.46495 * 120.00264 * 0.02562 * 9 7 6 20 20 C 1.52993 * 109.47241 * 89.99677 * 19 9 7 21 21 C 1.47206 * 109.47141 * 180.02562 * 20 19 9 22 22 N 8.47948 * 109.26897 * 134.65774 * 2 1 3 23 23 C 1.47008 * 110.74862 * 301.38671 * 5 4 2 24 24 C 1.53093 * 109.26147 * 58.61407 * 23 5 4 25 25 H 1.09005 * 109.50845 * 63.12974 * 24 23 5 26 26 C 1.52999 * 109.50763 * 183.21055 * 24 23 5 27 27 C 1.53003 * 117.51729 * 116.28412 * 26 24 23 28 28 C 1.53001 * 60.00039 * 107.48556 * 27 26 24 29 29 O 1.43012 * 109.26188 * 303.14782 * 24 23 5 30 30 H 1.08999 * 109.46925 * 299.91371 * 1 2 3 31 31 H 1.08996 * 109.47292 * 59.91732 * 1 2 3 32 32 H 1.09000 * 109.47169 * 179.91589 * 1 2 3 33 33 H 1.09004 * 109.50951 * 56.84983 * 4 2 1 34 34 H 1.09005 * 109.54320 * 296.74048 * 4 2 1 35 35 H 1.08998 * 109.47355 * 309.99560 * 6 5 4 36 36 H 1.08994 * 109.47266 * 70.00195 * 6 5 4 37 37 H 1.09000 * 109.47168 * 210.00440 * 10 9 7 38 38 H 1.09009 * 109.46860 * 330.00097 * 10 9 7 39 39 H 0.96992 * 120.00381 * 179.97438 * 14 13 11 40 40 H 1.09002 * 109.47446 * 210.00401 * 19 9 7 41 41 H 1.09008 * 109.46946 * 329.99980 * 19 9 7 42 42 H 1.08997 * 109.47437 * 299.99947 * 20 19 9 43 43 H 1.09000 * 109.47514 * 60.00323 * 20 19 9 44 44 H 1.08997 * 109.50956 * 298.67386 * 23 5 4 45 45 H 1.09009 * 109.50211 * 178.55060 * 23 5 4 46 46 H 1.09004 * 115.55446 * 330.58967 * 26 24 23 47 47 H 1.08999 * 117.50035 * 214.97544 * 27 26 24 48 48 H 1.09004 * 117.49762 * 359.97438 * 27 26 24 49 49 H 1.09003 * 117.49094 * 252.51291 * 28 27 26 50 50 H 1.08998 * 117.51705 * 107.48746 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7234 1.2487 5 7 3.5094 -0.7880 1.2048 6 6 4.0446 -1.4259 2.4149 7 6 5.5416 -1.2563 2.4517 8 8 6.0945 -0.5673 1.6208 9 7 6.2660 -1.8703 3.4082 10 6 7.7212 -1.7051 3.4444 11 6 8.0704 -0.5137 4.2987 12 1 7.2867 0.0624 4.7681 13 6 9.3904 -0.1599 4.4819 14 7 10.3447 -0.8618 3.9108 15 14 9.8232 1.3164 5.5414 16 1 9.3145 1.1025 6.9200 17 1 11.2982 1.4839 5.5780 18 1 9.2009 2.5368 4.9679 19 6 5.5982 -2.7030 4.4116 20 6 5.5178 -4.1448 3.9062 21 6 4.8462 -4.9814 4.9142 22 7 4.3282 -5.6261 5.6937 23 6 3.9639 -1.4884 -0.0052 24 6 3.4334 -0.7573 -1.2413 25 1 3.8540 0.2477 -1.2783 26 6 3.8358 -1.5261 -2.5014 27 6 2.7135 -2.1124 -3.3604 28 6 3.4971 -0.8940 -3.8530 29 8 2.0075 -0.6767 -1.1660 30 1 -0.3633 0.5125 0.8908 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6332 -1.7338 1.2767 34 1 1.7273 -0.1793 2.1395 35 1 3.6044 -0.9598 3.2964 36 1 3.7994 -2.4878 2.4046 37 1 8.1782 -2.6006 3.8654 38 1 8.0943 -1.5482 2.4323 39 1 11.2732 -0.6127 4.0393 40 1 6.1649 -2.6753 5.3423 41 1 4.5918 -2.3231 4.5876 42 1 4.9510 -4.1726 2.9756 43 1 6.5241 -4.5249 3.7301 44 1 3.5867 -2.5109 0.0027 45 1 5.0536 -1.5020 -0.0301 46 1 4.7635 -2.0938 -2.4297 47 1 2.9030 -3.0657 -3.8537 48 1 1.6882 -1.9508 -3.0275 49 1 2.9871 0.0693 -3.8444 50 1 4.2021 -1.0455 -4.6704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369389510.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:14 Heat of formation + Delta-G solvation = -37.538040 kcal Electronic energy + Delta-G solvation = -29836.501289 eV Core-core repulsion = 25864.252878 eV Total energy + Delta-G solvation = -3972.248411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.30994 -40.32708 -38.04784 -37.79991 -36.77653 -36.21866 -34.83005 -33.36199 -32.15970 -30.84596 -29.39881 -28.08116 -26.02137 -25.29708 -24.65606 -23.32674 -23.20412 -21.68872 -21.12776 -19.86538 -18.80943 -18.32565 -18.04345 -17.40864 -17.26599 -16.89998 -16.65411 -16.37649 -16.17230 -15.70905 -15.67039 -15.59984 -15.13291 -14.78866 -14.61872 -14.28542 -14.14718 -13.79861 -13.59703 -13.54569 -13.39428 -13.23207 -13.12221 -12.99987 -12.84152 -12.74195 -12.59918 -12.49958 -12.34365 -12.23945 -12.14420 -12.06369 -11.86629 -11.67647 -11.59752 -11.21558 -10.99966 -10.60960 -10.56853 -10.29646 -9.46535 -9.26607 -8.16404 -6.28391 1.40673 1.43814 1.50207 1.67454 1.82246 1.92881 2.20128 2.44339 2.61740 2.80081 3.00257 3.13186 3.16743 3.65623 3.84371 3.88955 3.94875 4.04352 4.06586 4.11043 4.17455 4.23235 4.24199 4.31540 4.39053 4.47159 4.55317 4.57307 4.60487 4.75182 4.77107 4.83227 4.84580 4.90500 5.00660 5.04680 5.07981 5.12451 5.15511 5.27399 5.32276 5.35758 5.39816 5.63077 5.84243 5.92280 6.01468 6.15305 6.29544 6.59084 6.78230 6.84468 7.37124 7.58204 8.89959 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009520 B = 0.003310 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.486233 B = 8456.543431 C = 9740.183021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.084 3.916 3 H 0.052 0.948 4 C 0.028 3.972 5 N -0.544 5.544 6 C 0.046 3.954 7 C 0.502 3.498 8 O -0.569 6.569 9 N -0.600 5.600 10 C 0.263 3.737 11 C -0.540 4.540 12 H 0.053 0.947 13 C 0.012 3.988 14 N -0.926 5.926 15 Si 0.956 3.044 16 H -0.263 1.263 17 H -0.283 1.283 18 H -0.280 1.280 19 C 0.114 3.886 20 C -0.037 4.037 21 C 0.245 3.755 22 N -0.488 5.488 23 C 0.035 3.965 24 C 0.134 3.866 25 H 0.046 0.954 26 C -0.168 4.168 27 C -0.152 4.152 28 C -0.171 4.171 29 O -0.382 6.382 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.091 0.909 37 H 0.033 0.967 38 H 0.003 0.997 39 H 0.265 0.735 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.132 0.868 43 H 0.120 0.880 44 H 0.048 0.952 45 H 0.073 0.927 46 H 0.115 0.885 47 H 0.104 0.896 48 H 0.099 0.901 49 H 0.089 0.911 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.759 -3.609 -8.806 21.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.026 3.974 3 H 0.070 0.930 4 C -0.100 4.100 5 N -0.269 5.269 6 C -0.085 4.085 7 C 0.290 3.710 8 O -0.447 6.447 9 N -0.331 5.331 10 C 0.141 3.859 11 C -0.578 4.578 12 H 0.071 0.929 13 C -0.187 4.187 14 N -0.566 5.566 15 Si 0.781 3.219 16 H -0.187 1.187 17 H -0.208 1.208 18 H -0.206 1.206 19 C -0.011 4.011 20 C -0.079 4.079 21 C -0.072 4.072 22 N -0.166 5.166 23 C -0.093 4.093 24 C 0.076 3.924 25 H 0.064 0.936 26 C -0.187 4.187 27 C -0.189 4.189 28 C -0.208 4.208 29 O -0.302 6.302 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.120 0.880 35 H 0.142 0.858 36 H 0.109 0.891 37 H 0.051 0.949 38 H 0.021 0.979 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.150 0.850 43 H 0.138 0.862 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.133 0.867 47 H 0.122 0.878 48 H 0.117 0.883 49 H 0.108 0.892 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.984 -3.820 -8.237 21.950 hybrid contribution 1.255 0.451 0.541 1.439 sum -18.729 -3.370 -7.697 20.527 Atomic orbital electron populations 1.21708 0.90575 1.03359 1.03538 1.22284 0.96181 0.94988 0.83944 0.92956 1.22912 0.85797 1.01053 1.00209 1.61727 1.09741 1.53919 1.01470 1.22099 0.90690 1.00590 0.95099 1.21076 0.90182 0.79062 0.80646 1.90660 1.73645 1.39821 1.40606 1.48100 1.08347 1.47632 1.29043 1.18756 0.75650 0.95773 0.95672 1.21735 0.92105 1.13756 1.30239 0.92874 1.25702 0.96392 0.99382 0.97246 1.70010 1.00335 1.41197 1.45050 0.85644 0.77012 0.79642 0.79575 1.18750 1.20806 1.20617 1.21508 0.99749 0.87918 0.91913 1.19824 1.02155 0.91707 0.94166 1.29146 0.92034 0.92781 0.93229 1.81277 1.11956 1.11591 1.11733 1.22691 1.01145 0.95635 0.89804 1.21318 0.80949 0.97361 0.92808 0.93611 1.22263 1.01097 1.04872 0.90459 1.22848 0.96887 0.97578 1.01611 1.22983 1.03691 0.97945 0.96162 1.87921 1.20430 1.78385 1.43469 0.89110 0.91662 0.91514 0.92774 0.87984 0.85830 0.89115 0.94885 0.97909 0.92624 0.89744 0.87587 0.85037 0.86202 0.93382 0.90872 0.86686 0.87758 0.88308 0.89233 0.87596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.57 71.98 0.69 -1.08 16 2 C 0.08 1.64 3.43 30.62 0.10 1.74 16 3 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 4 C 0.03 0.52 4.93 86.31 0.43 0.94 16 5 N -0.54 -14.04 4.42 -899.78 -3.98 -18.01 16 6 C 0.05 1.08 3.91 85.56 0.33 1.41 16 7 C 0.50 17.85 7.24 87.66 0.63 18.48 16 8 O -0.57 -26.68 14.26 -3.02 -0.04 -26.73 16 9 N -0.60 -21.00 2.46 -826.15 -2.03 -23.03 16 10 C 0.26 12.54 5.16 85.63 0.44 12.98 16 11 C -0.54 -29.00 9.39 25.60 0.24 -28.76 16 12 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 13 C 0.01 0.66 5.46 84.66 0.46 1.12 16 14 N -0.93 -53.64 13.29 21.45 0.28 -53.36 16 15 Si 0.96 43.64 29.54 68.60 2.03 45.66 16 16 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 19 C 0.11 2.67 5.08 86.38 0.44 3.11 16 20 C -0.04 -0.66 5.97 28.79 0.17 -0.48 16 21 C 0.25 5.17 15.44 89.44 1.38 6.55 16 22 N -0.49 -13.19 18.54 20.01 0.37 -12.81 16 23 C 0.04 0.94 4.54 86.31 0.39 1.34 16 24 C 0.13 3.40 3.15 30.63 0.10 3.50 16 25 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 26 C -0.17 -3.69 5.74 -10.79 -0.06 -3.75 16 27 C -0.15 -2.79 9.87 30.60 0.30 -2.48 16 28 C -0.17 -3.24 10.24 30.60 0.31 -2.93 16 29 O -0.38 -8.81 8.48 -148.98 -1.26 -10.07 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.10 1.56 8.09 -2.38 -0.02 1.54 16 35 H 0.12 2.39 7.61 -2.39 -0.02 2.38 16 36 H 0.09 1.53 6.83 -2.39 -0.02 1.52 16 37 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 38 H 0.00 0.16 7.42 -2.38 -0.02 0.14 16 39 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 40 H 0.08 2.21 8.07 -2.39 -0.02 2.19 16 41 H 0.11 1.84 6.61 -2.38 -0.02 1.82 16 42 H 0.13 1.67 7.12 -2.39 -0.02 1.65 16 43 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.07 2.44 6.10 -2.38 -0.01 2.42 16 46 H 0.12 2.51 8.08 -2.39 -0.02 2.49 16 47 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.10 1.93 7.03 -2.39 -0.02 1.92 16 49 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -73.65 408.12 2.66 -70.99 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.92 Total: 15.68 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 6.37 Total: 11.69 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -5.35 Total: -107.22 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -1.31 Total: -36.80 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -73.65 2.66 -70.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369389510.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.451 kcal (2) G-P(sol) polarization free energy of solvation -73.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds