Wall clock time and date at job start Tue Mar 31 2020 19:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46556 * 2 1 4 4 C 1.50692 * 109.47530 * 240.00335 * 2 1 3 5 5 H 1.07998 * 119.99829 * 239.99809 * 4 2 1 6 6 C 1.37880 * 120.00524 * 59.99582 * 4 2 1 7 7 N 1.31521 * 119.99451 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00259 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47119 * 89.99897 * 8 6 4 10 10 H 1.48501 * 109.46863 * 210.00298 * 8 6 4 11 11 H 1.48499 * 109.46831 * 329.99874 * 8 6 4 12 12 N 1.46496 * 109.47011 * 119.99354 * 2 1 3 13 13 C 1.46502 * 119.99491 * 60.00898 * 12 2 1 14 14 C 1.34774 * 120.00770 * 240.00502 * 12 2 1 15 15 O 1.21588 * 119.99507 * 0.02562 * 14 12 2 16 16 N 1.34773 * 120.00557 * 180.02562 * 14 12 2 17 17 C 1.39944 * 120.00195 * 184.47012 * 16 14 12 18 18 C 1.38922 * 120.03762 * 143.51238 * 17 16 14 19 19 C 1.38124 * 120.03613 * 179.97438 * 18 17 16 20 20 C 1.38216 * 120.12441 * 359.74880 * 19 18 17 21 21 C 1.38757 * 120.08266 * 0.50832 * 20 19 18 22 22 O 1.35905 * 120.02385 * 179.76793 * 21 20 19 23 23 C 1.42903 * 116.99583 * 359.72017 * 22 21 20 24 24 C 1.52998 * 109.47001 * 179.97438 * 23 22 21 25 25 N 1.46900 * 109.46735 * 62.85745 * 24 23 22 26 26 C 1.46896 * 111.00255 * 75.92556 * 25 24 23 27 27 C 1.46905 * 110.99771 * 199.87593 * 25 24 23 28 28 C 1.38635 * 119.96077 * 359.48908 * 21 20 19 29 29 H 1.08991 * 109.47721 * 299.99827 * 1 2 3 30 30 H 1.09009 * 109.47163 * 60.00458 * 1 2 3 31 31 H 1.09008 * 109.47168 * 179.97438 * 1 2 3 32 32 H 0.96995 * 119.99425 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47314 * 269.99373 * 13 12 2 34 34 H 1.09003 * 109.47676 * 29.99527 * 13 12 2 35 35 H 1.09005 * 109.47216 * 149.99540 * 13 12 2 36 36 H 0.97003 * 119.99570 * 4.47447 * 16 14 12 37 37 H 1.07992 * 119.98440 * 0.02562 * 18 17 16 38 38 H 1.08001 * 119.93795 * 180.02562 * 19 18 17 39 39 H 1.07998 * 119.95806 * 180.24730 * 20 19 18 40 40 H 1.08994 * 109.47218 * 299.99925 * 23 22 21 41 41 H 1.09002 * 109.46751 * 60.00210 * 23 22 21 42 42 H 1.08997 * 109.47073 * 182.85427 * 24 23 22 43 43 H 1.09002 * 109.47257 * 302.85811 * 24 23 22 44 44 H 1.09004 * 109.47283 * 59.99640 * 26 25 24 45 45 H 1.09003 * 109.47169 * 179.97438 * 26 25 24 46 46 H 1.09003 * 109.46792 * 299.99865 * 26 25 24 47 47 H 1.09003 * 109.47187 * 64.46163 * 27 25 24 48 48 H 1.09000 * 109.47079 * 184.45919 * 27 25 24 49 49 H 1.09000 * 109.47318 * 304.46007 * 27 25 24 50 50 H 1.07997 * 120.06237 * 180.23216 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3216 -1.1202 -4.0079 9 1 1.3431 -2.1617 -4.4118 10 1 2.4868 -0.1412 -5.1122 11 1 3.6296 -1.7581 -3.7120 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4280 14 6 2.7930 -0.0355 2.0835 15 8 3.0863 1.1287 1.8913 16 7 3.2426 -0.6709 3.1837 17 6 3.9682 0.0334 4.1511 18 6 3.8034 -0.2649 5.4979 19 6 4.5200 0.4299 6.4526 20 6 5.4062 1.4195 6.0709 21 6 5.5708 1.7253 4.7275 22 8 6.4390 2.7018 4.3538 23 6 7.1444 3.3768 5.3973 24 6 8.0681 4.4333 4.7879 25 7 7.2625 5.4425 4.0873 26 6 6.6171 6.3552 5.0403 27 6 8.0773 6.1852 3.1164 28 6 4.8535 1.0301 3.7662 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 0.7089 1.1614 -3.4844 33 1 0.7376 -2.1444 1.9993 34 1 1.5295 -2.5968 0.4708 35 1 2.4629 -2.5818 1.9864 36 1 3.0633 -1.6165 3.3049 37 1 3.1153 -1.0410 5.7985 38 1 4.3909 0.1964 7.4992 39 1 5.9680 1.9584 6.8194 40 1 6.4309 3.8592 6.0652 41 1 7.7384 2.6561 5.9594 42 1 8.6433 4.9133 5.5796 43 1 8.7485 3.9574 4.0817 44 1 7.3799 6.8643 5.6295 45 1 6.0275 7.0923 4.4951 46 1 5.9652 5.7864 5.7035 47 1 8.4219 5.5062 2.3364 48 1 7.4771 6.9776 2.6692 49 1 8.9374 6.6228 3.6232 50 1 4.9831 1.2641 2.7199 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444396684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:48 Heat of formation + Delta-G solvation = -15.148782 kcal Electronic energy + Delta-G solvation = -29087.566069 eV Core-core repulsion = 25116.288529 eV Total energy + Delta-G solvation = -3971.277540 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.39007 -39.45984 -37.91835 -36.87445 -35.38117 -34.10850 -32.70362 -31.08096 -29.84785 -29.17920 -28.40571 -27.78518 -26.11902 -25.18459 -24.65988 -22.96411 -22.26746 -21.47004 -20.50375 -19.09934 -18.45625 -17.26375 -16.46191 -16.42312 -16.08063 -15.82099 -15.68140 -15.20603 -14.92557 -14.88196 -14.74254 -14.42799 -13.94368 -13.53325 -13.15501 -13.09916 -12.78112 -12.70278 -12.60983 -12.50531 -12.40454 -11.94889 -11.82577 -11.80179 -11.58144 -11.53549 -11.47553 -11.04171 -10.89578 -10.81423 -10.78858 -10.64573 -10.23755 -10.13640 -9.85425 -9.28902 -9.07347 -8.53105 -8.40132 -8.12370 -7.88629 -7.49853 -6.03938 -4.11770 1.51933 1.65298 3.08300 3.28797 3.35936 3.37989 3.43361 3.69973 3.74844 4.12743 4.39129 4.58501 4.68419 4.77372 4.94740 4.97973 5.09724 5.10248 5.12038 5.22909 5.27315 5.32723 5.35901 5.40240 5.49534 5.56789 5.63192 5.71599 5.74685 5.75109 5.98417 6.07543 6.30341 6.44630 6.46466 6.59384 6.66346 6.77539 6.78338 6.81108 6.86229 7.06826 7.21462 7.22051 7.50969 7.66475 7.72002 7.86606 8.10628 8.24954 8.67267 8.89193 9.26090 9.55079 11.01408 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010781 B = 0.002845 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.487805 B = 9838.149457 C =11648.552671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.604 5.604 13 C 0.084 3.916 14 C 0.695 3.305 15 O -0.573 6.573 16 N -0.695 5.695 17 C 0.217 3.783 18 C -0.193 4.193 19 C -0.065 4.065 20 C -0.239 4.239 21 C 0.149 3.851 22 O -0.293 6.293 23 C 0.066 3.934 24 C 0.055 3.945 25 N -0.539 5.539 26 C 0.022 3.978 27 C 0.026 3.974 28 C -0.152 4.152 29 H 0.011 0.989 30 H 0.094 0.906 31 H 0.029 0.971 32 H 0.263 0.737 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.403 0.597 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.023 0.977 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.022 0.978 50 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.957 2.137 19.396 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.172 3.828 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.338 5.338 13 C -0.060 4.060 14 C 0.397 3.603 15 O -0.450 6.450 16 N -0.345 5.345 17 C 0.120 3.880 18 C -0.214 4.214 19 C -0.084 4.084 20 C -0.258 4.258 21 C 0.103 3.897 22 O -0.206 6.206 23 C -0.010 4.010 24 C -0.073 4.073 25 N -0.263 5.263 26 C -0.126 4.126 27 C -0.122 4.122 28 C -0.173 4.173 29 H 0.030 0.970 30 H 0.112 0.888 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.241 0.759 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.041 0.959 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.041 0.959 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.676 2.926 18.516 21.572 hybrid contribution 0.730 -0.617 -0.063 0.958 sum 11.406 2.309 18.453 21.816 Atomic orbital electron populations 1.22101 0.98211 0.99353 1.00842 1.18894 0.90655 0.94392 0.78841 0.91655 1.21330 1.31820 1.13051 0.90306 0.92262 1.24887 0.94978 0.94972 0.98924 1.69885 1.36358 1.22506 1.23749 0.86488 0.79156 0.79268 0.82429 1.20672 1.21096 1.19942 1.47609 1.50973 1.11487 1.23775 1.21546 0.98280 0.83552 1.02617 1.16017 0.79678 0.85042 0.79592 1.90907 1.62350 1.15422 1.76284 1.42979 1.57432 1.12795 1.21311 1.17189 0.90213 0.93101 0.87512 1.20741 1.04704 1.05062 0.90935 1.20564 0.94696 0.94445 0.98656 1.21070 1.06030 1.04209 0.94519 1.18802 0.90125 0.88517 0.92283 1.86213 1.53103 1.46964 1.34323 1.22766 0.94600 0.93756 0.89848 1.22197 0.94361 0.92620 0.98163 1.61858 1.32295 1.15172 1.16996 1.22466 0.98597 0.96013 0.95528 1.22399 0.95673 0.98369 0.95744 1.20561 0.97028 0.98777 1.00970 0.96975 0.88761 0.95213 0.92680 0.93832 0.89642 0.93569 0.75937 0.85997 0.85956 0.86141 0.92171 0.91882 0.92617 0.89635 0.95866 0.91075 0.91352 0.90973 0.91182 0.95924 0.83222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.97 37.16 0.33 -3.23 16 2 C 0.27 7.07 2.64 -69.09 -0.18 6.89 16 3 H 0.07 1.98 6.90 -51.93 -0.36 1.62 16 4 C -0.53 -14.32 7.99 -34.44 -0.28 -14.59 16 5 H 0.06 1.58 7.33 -52.49 -0.38 1.20 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.32 11.32 55.43 0.63 -24.69 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 12 N -0.60 -13.16 2.75 -181.01 -0.50 -13.66 16 13 C 0.08 1.40 9.24 59.85 0.55 1.95 16 14 C 0.69 15.22 8.12 -86.92 -0.71 14.52 16 15 O -0.57 -14.90 13.20 5.29 0.07 -14.84 16 16 N -0.70 -11.79 5.21 -14.24 -0.07 -11.87 16 17 C 0.22 3.59 6.27 -83.71 -0.52 3.06 16 18 C -0.19 -2.55 9.96 -39.37 -0.39 -2.94 16 19 C -0.06 -0.76 10.03 -39.63 -0.40 -1.16 16 20 C -0.24 -3.01 9.04 -39.40 -0.36 -3.37 16 21 C 0.15 2.34 6.68 -39.24 -0.26 2.08 16 22 O -0.29 -4.47 10.05 -19.44 -0.20 -4.67 16 23 C 0.07 0.69 4.92 37.16 0.18 0.87 16 24 C 0.05 0.51 5.39 -3.82 -0.02 0.49 16 25 N -0.54 -6.01 4.86 -251.25 -1.22 -7.23 16 26 C 0.02 0.20 9.39 60.06 0.56 0.77 16 27 C 0.03 0.25 9.52 60.07 0.57 0.82 16 28 C -0.15 -2.79 8.62 -39.25 -0.34 -3.13 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 2.50 6.07 -51.92 -0.32 2.19 16 31 H 0.03 0.66 7.67 -51.92 -0.40 0.26 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.50 7.02 -51.93 -0.36 1.14 16 35 H 0.05 0.61 6.30 -51.93 -0.33 0.28 16 36 H 0.40 5.42 6.52 -40.82 -0.27 5.15 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.12 1.19 6.29 -52.49 -0.33 0.86 16 40 H 0.06 0.59 6.38 -51.93 -0.33 0.25 16 41 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 42 H 0.06 0.39 7.96 -51.93 -0.41 -0.02 16 43 H 0.09 0.80 7.94 -51.93 -0.41 0.39 16 44 H 0.02 0.17 8.09 -51.93 -0.42 -0.25 16 45 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 46 H 0.07 0.63 6.85 -51.93 -0.36 0.27 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 49 H 0.02 0.17 8.13 -51.93 -0.42 -0.25 16 50 H 0.15 3.26 6.33 -52.49 -0.33 2.93 16 LS Contribution 398.72 15.07 6.01 6.01 Total: -1.00 -33.67 398.72 -9.56 -43.23 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.91 Total: 6.82 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -1.34 Total: 4.73 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -1.17 Total: -57.45 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.13 Total: -19.50 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.67 -9.56 -43.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444396684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.081 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds