Wall clock time and date at job start Tue Mar 31 2020 19:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46556 * 2 1 4 4 C 1.50692 * 109.47530 * 240.00335 * 2 1 3 5 5 H 1.07998 * 119.99829 * 239.99809 * 4 2 1 6 6 C 1.37880 * 120.00524 * 59.99582 * 4 2 1 7 7 N 1.31521 * 119.99451 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00259 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47119 * 89.99897 * 8 6 4 10 10 H 1.48501 * 109.46863 * 210.00298 * 8 6 4 11 11 H 1.48499 * 109.46831 * 329.99874 * 8 6 4 12 12 N 1.46496 * 109.47011 * 119.99354 * 2 1 3 13 13 C 1.46502 * 119.99491 * 60.00898 * 12 2 1 14 14 C 1.34774 * 120.00770 * 240.00502 * 12 2 1 15 15 O 1.21588 * 119.99507 * 0.02562 * 14 12 2 16 16 N 1.34773 * 120.00557 * 180.02562 * 14 12 2 17 17 C 1.39944 * 120.00195 * 184.47012 * 16 14 12 18 18 C 1.38922 * 120.03762 * 143.51238 * 17 16 14 19 19 C 1.38124 * 120.03613 * 179.97438 * 18 17 16 20 20 C 1.38216 * 120.12441 * 359.74880 * 19 18 17 21 21 C 1.38757 * 120.08266 * 0.50832 * 20 19 18 22 22 O 1.35905 * 120.02385 * 179.76793 * 21 20 19 23 23 C 1.42903 * 116.99583 * 359.72017 * 22 21 20 24 24 C 1.52998 * 109.47001 * 179.97438 * 23 22 21 25 25 N 1.46900 * 109.46735 * 62.85745 * 24 23 22 26 26 C 1.46896 * 111.00255 * 75.92556 * 25 24 23 27 27 C 1.46905 * 110.99771 * 199.87593 * 25 24 23 28 28 C 1.38635 * 119.96077 * 359.48908 * 21 20 19 29 29 H 1.08991 * 109.47721 * 299.99827 * 1 2 3 30 30 H 1.09009 * 109.47163 * 60.00458 * 1 2 3 31 31 H 1.09008 * 109.47168 * 179.97438 * 1 2 3 32 32 H 0.96995 * 119.99425 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47314 * 269.99373 * 13 12 2 34 34 H 1.09003 * 109.47676 * 29.99527 * 13 12 2 35 35 H 1.09005 * 109.47216 * 149.99540 * 13 12 2 36 36 H 0.97003 * 119.99570 * 4.47447 * 16 14 12 37 37 H 1.07992 * 119.98440 * 0.02562 * 18 17 16 38 38 H 1.08001 * 119.93795 * 180.02562 * 19 18 17 39 39 H 1.07998 * 119.95806 * 180.24730 * 20 19 18 40 40 H 1.08994 * 109.47218 * 299.99925 * 23 22 21 41 41 H 1.09002 * 109.46751 * 60.00210 * 23 22 21 42 42 H 1.08997 * 109.47073 * 182.85427 * 24 23 22 43 43 H 1.09002 * 109.47257 * 302.85811 * 24 23 22 44 44 H 1.09004 * 109.47283 * 59.99640 * 26 25 24 45 45 H 1.09003 * 109.47169 * 179.97438 * 26 25 24 46 46 H 1.09003 * 109.46792 * 299.99865 * 26 25 24 47 47 H 1.09003 * 109.47187 * 64.46163 * 27 25 24 48 48 H 1.09000 * 109.47079 * 184.45919 * 27 25 24 49 49 H 1.09000 * 109.47318 * 304.46007 * 27 25 24 50 50 H 1.07997 * 120.06237 * 180.23216 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3216 -1.1202 -4.0079 9 1 1.3431 -2.1617 -4.4118 10 1 2.4868 -0.1412 -5.1122 11 1 3.6296 -1.7581 -3.7120 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4280 14 6 2.7930 -0.0355 2.0835 15 8 3.0863 1.1287 1.8913 16 7 3.2426 -0.6709 3.1837 17 6 3.9682 0.0334 4.1511 18 6 3.8034 -0.2649 5.4979 19 6 4.5200 0.4299 6.4526 20 6 5.4062 1.4195 6.0709 21 6 5.5708 1.7253 4.7275 22 8 6.4390 2.7018 4.3538 23 6 7.1444 3.3768 5.3973 24 6 8.0681 4.4333 4.7879 25 7 7.2625 5.4425 4.0873 26 6 6.6171 6.3552 5.0403 27 6 8.0773 6.1852 3.1164 28 6 4.8535 1.0301 3.7662 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 0.7089 1.1614 -3.4844 33 1 0.7376 -2.1444 1.9993 34 1 1.5295 -2.5968 0.4708 35 1 2.4629 -2.5818 1.9864 36 1 3.0633 -1.6165 3.3049 37 1 3.1153 -1.0410 5.7985 38 1 4.3909 0.1964 7.4992 39 1 5.9680 1.9584 6.8194 40 1 6.4309 3.8592 6.0652 41 1 7.7384 2.6561 5.9594 42 1 8.6433 4.9133 5.5796 43 1 8.7485 3.9574 4.0817 44 1 7.3799 6.8643 5.6295 45 1 6.0275 7.0923 4.4951 46 1 5.9652 5.7864 5.7035 47 1 8.4219 5.5062 2.3364 48 1 7.4771 6.9776 2.6692 49 1 8.9374 6.6228 3.6232 50 1 4.9831 1.2641 2.7199 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444396684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:47 Heat of formation + Delta-G solvation = -38.354485 kcal Electronic energy + Delta-G solvation = -29088.572344 eV Core-core repulsion = 25116.288529 eV Total energy + Delta-G solvation = -3972.283815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.76137 -40.72804 -38.96445 -37.90590 -37.11419 -35.63026 -34.60090 -32.02946 -31.52917 -30.26029 -29.74126 -28.51014 -27.62395 -27.29608 -25.52221 -24.29998 -23.40223 -22.75046 -21.65711 -20.72306 -19.70925 -18.80152 -18.31743 -17.43375 -17.30215 -17.10022 -16.79080 -16.64121 -16.36645 -15.94634 -15.83324 -15.65240 -15.33197 -14.92732 -14.58140 -14.38932 -14.22652 -14.04360 -13.55048 -13.53955 -13.42711 -13.33166 -13.14203 -12.92663 -12.75045 -12.72463 -12.69249 -12.61240 -12.59016 -12.49354 -12.19946 -12.12399 -11.82121 -11.75979 -11.21627 -11.15984 -10.90166 -10.51504 -9.52507 -9.27019 -9.21992 -8.89926 -8.13801 -6.30580 0.37078 0.56060 1.41128 1.43459 1.53004 1.71993 2.15822 2.33897 2.43960 2.91389 2.99014 3.11594 3.14082 3.87567 4.01014 4.08835 4.15785 4.26869 4.32326 4.34064 4.36271 4.42119 4.43387 4.55265 4.58709 4.62776 4.70203 4.71259 4.71724 4.80240 4.87702 4.91519 4.98153 4.98439 4.99875 5.06429 5.32956 5.39968 5.42180 5.48647 5.56292 5.58650 5.66312 5.97562 5.98879 6.05517 6.10723 6.15848 6.25815 6.63412 6.76968 7.08291 7.36681 7.63583 8.90668 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010781 B = 0.002845 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.487805 B = 9838.149457 C =11648.552671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.278 3.722 3 H 0.006 0.994 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.967 3.033 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.612 5.612 13 C 0.079 3.921 14 C 0.689 3.311 15 O -0.627 6.627 16 N -0.675 5.675 17 C 0.191 3.809 18 C -0.183 4.183 19 C -0.052 4.052 20 C -0.227 4.227 21 C 0.136 3.864 22 O -0.325 6.325 23 C 0.059 3.941 24 C 0.055 3.945 25 N -0.576 5.576 26 C 0.024 3.976 27 C 0.028 3.972 28 C -0.192 4.192 29 H 0.018 0.982 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.265 0.735 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.421 0.579 37 H 0.155 0.845 38 H 0.170 0.830 39 H 0.155 0.845 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.042 0.958 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.579 0.119 22.708 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.176 3.824 3 H 0.024 0.976 4 C -0.578 4.578 5 H 0.080 0.920 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.792 3.208 9 H -0.190 1.190 10 H -0.212 1.212 11 H -0.197 1.197 12 N -0.346 5.346 13 C -0.063 4.063 14 C 0.390 3.610 15 O -0.507 6.507 16 N -0.326 5.326 17 C 0.095 3.905 18 C -0.204 4.204 19 C -0.070 4.070 20 C -0.246 4.246 21 C 0.090 3.910 22 O -0.239 6.239 23 C -0.016 4.016 24 C -0.072 4.072 25 N -0.301 5.301 26 C -0.124 4.124 27 C -0.120 4.120 28 C -0.214 4.214 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.262 0.738 37 H 0.173 0.827 38 H 0.187 0.813 39 H 0.173 0.827 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.061 0.939 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.305 0.846 21.884 24.646 hybrid contribution 0.615 0.084 -0.974 1.155 sum 11.921 0.930 20.910 24.087 Atomic orbital electron populations 1.21874 0.96934 1.00247 0.99872 1.18457 0.91519 0.91863 0.80564 0.97571 1.21584 1.31942 1.13145 0.91096 0.92030 1.25754 0.95085 0.95639 1.02046 1.70035 1.37340 1.23824 1.24447 0.85423 0.78809 0.78247 0.78320 1.18964 1.21204 1.19704 1.47474 1.51009 1.13417 1.22664 1.21827 1.00906 0.80436 1.03135 1.16227 0.79553 0.84567 0.80611 1.90879 1.64067 1.18104 1.77675 1.42601 1.56671 1.13448 1.19906 1.17482 0.90596 0.93560 0.88854 1.21096 1.04809 1.05449 0.89043 1.21146 0.92651 0.92661 1.00581 1.21462 1.05759 1.04020 0.93353 1.18918 0.90220 0.88626 0.93227 1.86185 1.53457 1.47232 1.37046 1.23112 0.94884 0.94319 0.89283 1.22263 0.94053 0.92135 0.98799 1.61829 1.33600 1.16368 1.18270 1.22445 0.98977 0.95673 0.95272 1.22360 0.96187 0.97957 0.95491 1.20381 1.00212 1.01596 0.99210 0.96340 0.91269 0.93154 0.92618 0.91295 0.90552 0.89871 0.73785 0.82721 0.81254 0.82735 0.91292 0.89291 0.89533 0.90350 0.93790 0.91684 0.91603 0.92160 0.91416 0.93917 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.52 8.97 71.98 0.65 -5.87 16 2 C 0.28 15.15 2.64 44.24 0.12 15.26 16 3 H 0.01 0.41 6.90 -2.39 -0.02 0.40 16 4 C -0.54 -30.18 7.99 25.60 0.20 -29.97 16 5 H 0.06 3.33 7.33 -2.91 -0.02 3.31 16 6 C 0.01 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -54.30 11.32 21.45 0.24 -54.06 16 8 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 9 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 10 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 N -0.61 -27.31 2.75 -844.86 -2.33 -29.64 16 13 C 0.08 2.51 9.24 127.77 1.18 3.69 16 14 C 0.69 31.59 8.12 179.06 1.45 33.05 16 15 O -0.63 -35.52 13.20 -3.99 -0.05 -35.57 16 16 N -0.67 -22.94 5.21 -317.23 -1.65 -24.59 16 17 C 0.19 6.32 6.27 38.13 0.24 6.56 16 18 C -0.18 -4.25 9.96 22.41 0.22 -4.02 16 19 C -0.05 -0.99 10.03 22.24 0.22 -0.77 16 20 C -0.23 -5.04 9.04 22.39 0.20 -4.84 16 21 C 0.14 4.34 6.68 22.49 0.15 4.49 16 22 O -0.33 -10.27 10.05 -92.49 -0.93 -11.20 16 23 C 0.06 1.15 4.92 71.98 0.35 1.51 16 24 C 0.06 0.98 5.39 86.30 0.47 1.45 16 25 N -0.58 -12.91 4.86 -948.83 -4.61 -17.52 16 26 C 0.02 0.43 9.39 127.69 1.20 1.63 16 27 C 0.03 0.53 9.52 127.69 1.22 1.75 16 28 C -0.19 -7.53 8.62 22.49 0.19 -7.34 16 29 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 3.81 6.07 -2.38 -0.01 3.80 16 31 H 0.05 2.24 7.67 -2.38 -0.02 2.22 16 32 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.08 2.59 7.02 -2.39 -0.02 2.57 16 35 H 0.08 1.98 6.30 -2.38 -0.02 1.97 16 36 H 0.42 10.55 6.52 -92.71 -0.60 9.95 16 37 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 38 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 39 H 0.16 2.34 6.29 -2.91 -0.02 2.32 16 40 H 0.07 1.20 6.38 -2.39 -0.02 1.19 16 41 H 0.09 1.24 7.65 -2.39 -0.02 1.22 16 42 H 0.09 1.00 7.96 -2.39 -0.02 0.98 16 43 H 0.08 1.47 7.94 -2.39 -0.02 1.45 16 44 H 0.04 0.58 8.09 -2.38 -0.02 0.56 16 45 H 0.06 1.19 8.07 -2.39 -0.02 1.17 16 46 H 0.07 1.17 6.85 -2.39 -0.02 1.15 16 47 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.07 1.28 8.04 -2.39 -0.02 1.26 16 49 H 0.04 0.62 8.13 -2.39 -0.02 0.61 16 50 H 0.10 4.76 6.33 -2.91 -0.02 4.74 16 Total: -1.00 -81.62 398.72 1.55 -80.07 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.34 Total: 28.59 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 8.52 Total: 17.83 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -8.35 Total: -125.81 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -0.98 Total: -46.77 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -81.62 1.55 -80.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444396684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.716 kcal (2) G-P(sol) polarization free energy of solvation -81.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds