Wall clock time and date at job start Tue Mar 31 2020 19:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46852 * 2 1 4 4 C 1.50699 * 109.47086 * 119.99664 * 2 1 3 5 5 H 1.08001 * 119.99769 * 120.00789 * 4 2 1 6 6 C 1.37872 * 120.00484 * 300.00025 * 4 2 1 7 7 N 1.31508 * 120.00342 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 119.99624 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47114 * 90.00053 * 8 6 4 10 10 H 1.48504 * 109.47321 * 209.99493 * 8 6 4 11 11 H 1.48494 * 109.47399 * 329.99973 * 8 6 4 12 12 N 1.46499 * 109.47309 * 239.99954 * 2 1 3 13 13 C 1.46499 * 120.00004 * 299.99934 * 12 2 1 14 14 C 1.34774 * 120.00164 * 119.99399 * 12 2 1 15 15 O 1.21595 * 119.99895 * 0.02562 * 14 12 2 16 16 N 1.34771 * 120.00058 * 180.02562 * 14 12 2 17 17 C 1.39946 * 120.00023 * 175.42055 * 16 14 12 18 18 C 1.38927 * 120.04142 * 214.82213 * 17 16 14 19 19 C 1.38127 * 120.03918 * 179.76779 * 18 17 16 20 20 C 1.38216 * 120.12470 * 0.50779 * 19 18 17 21 21 C 1.38765 * 120.08153 * 359.74422 * 20 19 18 22 22 O 1.35897 * 120.02256 * 179.97438 * 21 20 19 23 23 C 1.42903 * 116.99881 * 0.02562 * 22 21 20 24 24 C 1.52998 * 109.47605 * 180.02562 * 23 22 21 25 25 N 1.46896 * 109.46908 * 64.99515 * 24 23 22 26 26 C 1.46903 * 110.99894 * 66.05320 * 25 24 23 27 27 C 1.46898 * 111.00116 * 190.00172 * 25 24 23 28 28 C 1.38628 * 119.96003 * 0.02562 * 21 20 19 29 29 H 1.08997 * 109.47205 * 299.99878 * 1 2 3 30 30 H 1.09000 * 109.47419 * 60.00249 * 1 2 3 31 31 H 1.09007 * 109.46852 * 180.02562 * 1 2 3 32 32 H 0.97003 * 120.00138 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47297 * 89.99853 * 13 12 2 34 34 H 1.08999 * 109.47331 * 209.99511 * 13 12 2 35 35 H 1.09000 * 109.47150 * 329.99638 * 13 12 2 36 36 H 0.96995 * 120.00407 * 355.42042 * 16 14 12 37 37 H 1.07996 * 119.98072 * 0.02562 * 18 17 16 38 38 H 1.07995 * 119.93729 * 180.25650 * 19 18 17 39 39 H 1.07997 * 119.95866 * 179.72848 * 20 19 18 40 40 H 1.09003 * 109.47085 * 300.00582 * 23 22 21 41 41 H 1.09007 * 109.47088 * 59.99869 * 23 22 21 42 42 H 1.08994 * 109.47543 * 185.00255 * 24 23 22 43 43 H 1.09005 * 109.46623 * 305.00083 * 24 23 22 44 44 H 1.09005 * 109.47251 * 59.99499 * 26 25 24 45 45 H 1.08994 * 109.47181 * 179.97438 * 26 25 24 46 46 H 1.09008 * 109.46854 * 299.99955 * 26 25 24 47 47 H 1.09001 * 109.47187 * 60.00408 * 27 25 24 48 48 H 1.09003 * 109.47374 * 180.02562 * 27 25 24 49 49 H 1.09006 * 109.47124 * 300.00739 * 27 25 24 50 50 H 1.08001 * 120.06153 * 180.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8589 3.5565 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8469 2.1764 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.7931 -0.0356 -2.0834 15 8 3.0871 1.1284 -1.8908 16 7 3.2420 -0.6708 -3.1840 17 6 3.9656 0.0341 -4.1525 18 6 3.8253 -0.2879 -5.4966 19 6 4.5360 0.4110 -6.4529 20 6 5.3959 1.4249 -6.0748 21 6 5.5438 1.7473 -4.7333 22 8 6.3900 2.7440 -4.3628 23 6 7.0949 3.4183 -5.4072 24 6 7.9926 4.4991 -4.8016 25 7 9.0310 3.8676 -3.9766 26 6 9.9496 3.0735 -4.8034 27 6 9.7628 4.8710 -3.1921 28 6 4.8287 1.0512 -3.7710 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.9034 -0.5277 4.4375 33 1 0.7377 -2.1444 -1.9993 34 1 2.4629 -2.5819 -1.9864 35 1 1.5296 -2.5969 -0.4708 36 1 3.0635 -1.6165 -3.3049 37 1 3.1571 -1.0824 -5.7944 38 1 4.4225 0.1621 -7.4976 39 1 5.9535 1.9667 -6.8244 40 1 7.7080 2.7013 -5.9534 41 1 6.3803 3.8791 -6.0892 42 1 8.4621 5.0717 -5.6014 43 1 7.3918 5.1653 -4.1823 44 1 10.4311 3.7211 -5.5361 45 1 10.7085 2.6174 -4.1678 46 1 9.3908 2.2930 -5.3201 47 1 9.0685 5.3974 -2.5373 48 1 10.5258 4.3765 -2.5909 49 1 10.2376 5.5839 -3.8665 50 1 4.9423 1.3011 -2.7265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444396685.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:51 Heat of formation + Delta-G solvation = -5.797297 kcal Electronic energy + Delta-G solvation = -29113.971918 eV Core-core repulsion = 25143.099889 eV Total energy + Delta-G solvation = -3970.872029 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.49833 -39.58661 -38.02660 -36.95569 -35.58983 -34.22992 -32.64705 -31.12446 -30.52501 -29.31003 -28.70299 -27.86512 -26.28005 -25.12018 -24.75468 -23.09508 -22.34661 -21.55764 -20.55393 -19.17092 -18.52400 -17.48373 -16.59553 -16.56018 -16.19764 -16.01623 -15.74703 -15.29158 -15.19785 -14.93952 -14.72392 -14.64775 -13.95557 -13.52500 -13.37330 -13.15275 -12.93999 -12.78910 -12.70780 -12.61583 -12.44107 -12.21744 -12.05837 -11.95627 -11.88987 -11.74192 -11.54700 -11.51145 -11.15921 -11.03177 -10.79729 -10.70025 -10.13218 -9.96812 -9.61664 -9.43677 -9.20898 -8.61580 -8.60137 -8.19853 -7.97386 -7.63987 -6.12908 -4.13587 1.45622 1.59539 2.98046 3.25831 3.30857 3.39893 3.43547 3.61505 3.65538 4.03937 4.37502 4.40135 4.60378 4.73701 4.87578 4.91879 5.05095 5.05613 5.06983 5.17621 5.20679 5.26951 5.29902 5.33574 5.44501 5.53412 5.57446 5.65575 5.66832 5.69047 5.88449 5.99035 6.21600 6.26333 6.33797 6.38583 6.40495 6.48159 6.54206 6.62588 6.70963 6.74126 6.84862 6.93085 7.13170 7.36358 7.54684 7.60741 7.64841 8.36679 8.51516 8.87339 9.09890 9.48220 10.99759 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.002840 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.863454 B = 9855.731979 C =11542.750420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.244 3.756 3 H 0.065 0.935 4 C -0.529 4.529 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.598 5.598 13 C 0.082 3.918 14 C 0.699 3.301 15 O -0.575 6.575 16 N -0.692 5.692 17 C 0.216 3.784 18 C -0.193 4.193 19 C -0.064 4.064 20 C -0.238 4.238 21 C 0.149 3.851 22 O -0.294 6.294 23 C 0.064 3.936 24 C 0.054 3.946 25 N -0.540 5.540 26 C 0.020 3.980 27 C 0.025 3.975 28 C -0.154 4.154 29 H 0.051 0.949 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.266 0.734 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.405 0.595 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.023 0.977 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.023 0.977 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.571 4.403 -22.336 24.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.142 3.858 3 H 0.083 0.917 4 C -0.567 4.567 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.332 5.332 13 C -0.062 4.062 14 C 0.401 3.599 15 O -0.452 6.452 16 N -0.341 5.341 17 C 0.119 3.881 18 C -0.214 4.214 19 C -0.083 4.083 20 C -0.258 4.258 21 C 0.103 3.897 22 O -0.206 6.206 23 C -0.012 4.012 24 C -0.074 4.074 25 N -0.264 5.264 26 C -0.128 4.128 27 C -0.123 4.123 28 C -0.175 4.175 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.243 0.757 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.107 0.893 44 H 0.042 0.958 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.041 0.959 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.519 4.980 -21.341 23.892 hybrid contribution -0.315 0.642 -0.624 0.950 sum 9.204 5.623 -21.965 24.470 Atomic orbital electron populations 1.22460 0.99077 1.01074 0.99262 1.19235 0.89774 0.95057 0.81722 0.91731 1.21167 1.32701 1.14335 0.88485 0.90293 1.24843 0.95663 0.96567 0.95585 1.69870 1.45173 1.40225 0.97975 0.86921 0.80347 0.83890 0.77579 1.20427 1.22131 1.18686 1.47171 1.51210 1.11673 1.23131 1.21615 0.98455 0.82994 1.03124 1.15933 0.79498 0.84930 0.79586 1.90891 1.62323 1.15563 1.76409 1.42903 1.57323 1.12863 1.21055 1.17191 0.90420 0.93042 0.87461 1.20725 1.05020 1.04823 0.90854 1.20566 0.94773 0.94264 0.98676 1.21082 1.06318 1.03846 0.94568 1.18800 0.90143 0.88487 0.92289 1.86218 1.54106 1.45845 1.34479 1.22814 0.94122 0.94525 0.89771 1.22198 0.93284 0.95166 0.96706 1.61891 1.13755 1.24802 1.25944 1.22470 0.96026 0.97781 0.96507 1.22392 0.98416 0.93994 0.97465 1.20601 0.97234 0.98545 1.01114 0.93106 0.94805 0.92597 0.92422 0.93636 0.93181 0.89104 0.75729 0.85935 0.85893 0.86114 0.92033 0.91734 0.92806 0.89309 0.95819 0.91126 0.91207 0.91002 0.91151 0.95879 0.82988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.67 37.16 0.32 -3.16 16 2 C 0.24 5.95 2.23 -69.08 -0.15 5.80 16 3 H 0.06 1.76 5.96 -51.92 -0.31 1.45 16 4 C -0.53 -14.63 8.57 -34.44 -0.30 -14.93 16 5 H 0.08 2.34 7.58 -52.49 -0.40 1.94 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -27.02 13.96 55.43 0.77 -26.25 16 8 Si 0.88 22.01 24.37 -169.99 -4.14 17.87 16 9 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 10 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.26 -6.50 6.53 56.52 0.37 -6.13 16 12 N -0.60 -12.41 2.75 -181.01 -0.50 -12.91 16 13 C 0.08 1.31 9.24 59.85 0.55 1.86 16 14 C 0.70 14.58 8.12 -86.93 -0.71 13.88 16 15 O -0.57 -14.17 13.10 5.28 0.07 -14.10 16 16 N -0.69 -11.22 5.22 -14.24 -0.07 -11.29 16 17 C 0.22 3.43 6.30 -83.71 -0.53 2.90 16 18 C -0.19 -2.42 9.96 -39.37 -0.39 -2.81 16 19 C -0.06 -0.72 10.03 -39.63 -0.40 -1.12 16 20 C -0.24 -2.89 9.04 -39.39 -0.36 -3.24 16 21 C 0.15 2.27 6.68 -39.24 -0.26 2.01 16 22 O -0.29 -4.35 10.08 -19.42 -0.20 -4.55 16 23 C 0.06 0.64 4.80 37.16 0.18 0.82 16 24 C 0.05 0.50 5.34 -3.83 -0.02 0.48 16 25 N -0.54 -5.61 4.97 -251.26 -1.25 -6.86 16 26 C 0.02 0.17 9.33 60.07 0.56 0.73 16 27 C 0.03 0.22 9.57 60.06 0.57 0.79 16 28 C -0.15 -2.73 8.63 -39.25 -0.34 -3.07 16 29 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 1.12 7.67 -51.92 -0.40 0.72 16 32 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.64 6.30 -51.93 -0.33 0.31 16 35 H 0.09 1.59 7.02 -51.93 -0.36 1.23 16 36 H 0.41 5.17 6.52 -40.82 -0.27 4.90 16 37 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.12 1.14 6.29 -52.49 -0.33 0.81 16 40 H 0.06 0.55 5.85 -51.93 -0.30 0.24 16 41 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 42 H 0.05 0.37 8.12 -51.93 -0.42 -0.05 16 43 H 0.09 0.86 8.06 -51.93 -0.42 0.44 16 44 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 46 H 0.07 0.59 6.37 -51.92 -0.33 0.26 16 47 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 48 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 49 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 50 H 0.15 3.22 6.22 -52.49 -0.33 2.90 16 LS Contribution 391.16 15.07 5.89 5.89 Total: -1.00 -34.66 391.16 -8.52 -43.19 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.74 Total: 6.00 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -1.36 Total: 3.01 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -1.05 Total: -57.31 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.13 Total: -18.65 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.87 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.66 -8.52 -43.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444396685.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.389 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds