Wall clock time and date at job start Tue Mar 31 2020 19:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46852 * 2 1 4 4 C 1.50699 * 109.47086 * 119.99664 * 2 1 3 5 5 H 1.08001 * 119.99769 * 120.00789 * 4 2 1 6 6 C 1.37872 * 120.00484 * 300.00025 * 4 2 1 7 7 N 1.31508 * 120.00342 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 119.99624 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47114 * 90.00053 * 8 6 4 10 10 H 1.48504 * 109.47321 * 209.99493 * 8 6 4 11 11 H 1.48494 * 109.47399 * 329.99973 * 8 6 4 12 12 N 1.46499 * 109.47309 * 239.99954 * 2 1 3 13 13 C 1.46499 * 120.00004 * 299.99934 * 12 2 1 14 14 C 1.34774 * 120.00164 * 119.99399 * 12 2 1 15 15 O 1.21595 * 119.99895 * 0.02562 * 14 12 2 16 16 N 1.34771 * 120.00058 * 180.02562 * 14 12 2 17 17 C 1.39946 * 120.00023 * 175.42055 * 16 14 12 18 18 C 1.38927 * 120.04142 * 214.82213 * 17 16 14 19 19 C 1.38127 * 120.03918 * 179.76779 * 18 17 16 20 20 C 1.38216 * 120.12470 * 0.50779 * 19 18 17 21 21 C 1.38765 * 120.08153 * 359.74422 * 20 19 18 22 22 O 1.35897 * 120.02256 * 179.97438 * 21 20 19 23 23 C 1.42903 * 116.99881 * 0.02562 * 22 21 20 24 24 C 1.52998 * 109.47605 * 180.02562 * 23 22 21 25 25 N 1.46896 * 109.46908 * 64.99515 * 24 23 22 26 26 C 1.46903 * 110.99894 * 66.05320 * 25 24 23 27 27 C 1.46898 * 111.00116 * 190.00172 * 25 24 23 28 28 C 1.38628 * 119.96003 * 0.02562 * 21 20 19 29 29 H 1.08997 * 109.47205 * 299.99878 * 1 2 3 30 30 H 1.09000 * 109.47419 * 60.00249 * 1 2 3 31 31 H 1.09007 * 109.46852 * 180.02562 * 1 2 3 32 32 H 0.97003 * 120.00138 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47297 * 89.99853 * 13 12 2 34 34 H 1.08999 * 109.47331 * 209.99511 * 13 12 2 35 35 H 1.09000 * 109.47150 * 329.99638 * 13 12 2 36 36 H 0.96995 * 120.00407 * 355.42042 * 16 14 12 37 37 H 1.07996 * 119.98072 * 0.02562 * 18 17 16 38 38 H 1.07995 * 119.93729 * 180.25650 * 19 18 17 39 39 H 1.07997 * 119.95866 * 179.72848 * 20 19 18 40 40 H 1.09003 * 109.47085 * 300.00582 * 23 22 21 41 41 H 1.09007 * 109.47088 * 59.99869 * 23 22 21 42 42 H 1.08994 * 109.47543 * 185.00255 * 24 23 22 43 43 H 1.09005 * 109.46623 * 305.00083 * 24 23 22 44 44 H 1.09005 * 109.47251 * 59.99499 * 26 25 24 45 45 H 1.08994 * 109.47181 * 179.97438 * 26 25 24 46 46 H 1.09008 * 109.46854 * 299.99955 * 26 25 24 47 47 H 1.09001 * 109.47187 * 60.00408 * 27 25 24 48 48 H 1.09003 * 109.47374 * 180.02562 * 27 25 24 49 49 H 1.09006 * 109.47124 * 300.00739 * 27 25 24 50 50 H 1.08001 * 120.06153 * 180.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8589 3.5565 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8469 2.1764 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.7931 -0.0356 -2.0834 15 8 3.0871 1.1284 -1.8908 16 7 3.2420 -0.6708 -3.1840 17 6 3.9656 0.0341 -4.1525 18 6 3.8253 -0.2879 -5.4966 19 6 4.5360 0.4110 -6.4529 20 6 5.3959 1.4249 -6.0748 21 6 5.5438 1.7473 -4.7333 22 8 6.3900 2.7440 -4.3628 23 6 7.0949 3.4183 -5.4072 24 6 7.9926 4.4991 -4.8016 25 7 9.0310 3.8676 -3.9766 26 6 9.9496 3.0735 -4.8034 27 6 9.7628 4.8710 -3.1921 28 6 4.8287 1.0512 -3.7710 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.9034 -0.5277 4.4375 33 1 0.7377 -2.1444 -1.9993 34 1 2.4629 -2.5819 -1.9864 35 1 1.5296 -2.5969 -0.4708 36 1 3.0635 -1.6165 -3.3049 37 1 3.1571 -1.0824 -5.7944 38 1 4.4225 0.1621 -7.4976 39 1 5.9535 1.9667 -6.8244 40 1 7.7080 2.7013 -5.9534 41 1 6.3803 3.8791 -6.0892 42 1 8.4621 5.0717 -5.6014 43 1 7.3918 5.1653 -4.1823 44 1 10.4311 3.7211 -5.5361 45 1 10.7085 2.6174 -4.1678 46 1 9.3908 2.2930 -5.3201 47 1 9.0685 5.3974 -2.5373 48 1 10.5258 4.3765 -2.5909 49 1 10.2376 5.5839 -3.8665 50 1 4.9423 1.3011 -2.7265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444396685.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:50 Heat of formation + Delta-G solvation = -31.383187 kcal Electronic energy + Delta-G solvation = -29115.081406 eV Core-core repulsion = 25143.099889 eV Total energy + Delta-G solvation = -3971.981517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.82350 -40.78072 -39.02773 -37.94519 -37.21582 -35.66605 -34.61575 -32.33331 -31.97479 -30.31773 -29.84967 -28.52139 -27.71711 -27.16636 -25.57578 -24.39439 -23.44183 -22.76758 -21.62147 -20.72662 -19.75139 -19.05547 -18.46733 -17.61318 -17.36838 -17.11157 -16.88978 -16.67106 -16.49447 -15.94429 -15.88790 -15.65385 -15.28677 -15.16554 -14.65118 -14.54847 -14.23227 -14.13008 -14.01444 -13.66730 -13.62190 -13.41120 -13.26629 -13.09713 -13.03707 -12.79293 -12.71401 -12.66695 -12.57913 -12.44742 -12.05265 -11.96133 -11.71514 -11.57306 -11.38200 -11.18795 -10.91708 -10.79667 -9.58366 -9.28655 -9.24640 -8.90790 -8.35570 -6.39913 0.35963 0.55429 1.25524 1.36010 1.44869 1.63504 2.10591 2.27721 2.31411 2.90674 2.97647 2.99493 3.03634 3.83838 3.99806 4.07710 4.14456 4.25037 4.27952 4.33000 4.35437 4.40459 4.42954 4.44132 4.53714 4.54859 4.57859 4.60477 4.65365 4.70404 4.75135 4.80689 4.85063 4.94968 4.98468 5.00844 5.06360 5.19845 5.38115 5.39914 5.45012 5.50627 5.55520 5.69106 5.95528 5.98623 6.04131 6.09187 6.31758 6.61486 6.61753 6.97926 7.24064 7.54524 8.80509 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.002840 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.863454 B = 9855.731979 C =11542.750420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.248 3.752 3 H 0.029 0.971 4 C -0.527 4.527 5 H 0.046 0.954 6 C 0.024 3.976 7 N -0.939 5.939 8 Si 0.940 3.060 9 H -0.250 1.250 10 H -0.296 1.296 11 H -0.265 1.265 12 N -0.606 5.606 13 C 0.078 3.922 14 C 0.692 3.308 15 O -0.623 6.623 16 N -0.673 5.673 17 C 0.191 3.809 18 C -0.182 4.182 19 C -0.052 4.052 20 C -0.227 4.227 21 C 0.136 3.864 22 O -0.326 6.326 23 C 0.057 3.943 24 C 0.055 3.945 25 N -0.573 5.573 26 C 0.022 3.978 27 C 0.027 3.973 28 C -0.194 4.194 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.269 0.731 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.422 0.578 37 H 0.156 0.844 38 H 0.170 0.830 39 H 0.154 0.846 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.042 0.958 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.070 0.930 49 H 0.040 0.960 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.714 4.141 -26.675 28.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.144 3.856 3 H 0.047 0.953 4 C -0.565 4.565 5 H 0.064 0.936 6 C -0.175 4.175 7 N -0.578 5.578 8 Si 0.767 3.233 9 H -0.175 1.175 10 H -0.223 1.223 11 H -0.190 1.190 12 N -0.340 5.340 13 C -0.064 4.064 14 C 0.394 3.606 15 O -0.503 6.503 16 N -0.324 5.324 17 C 0.095 3.905 18 C -0.203 4.203 19 C -0.070 4.070 20 C -0.246 4.246 21 C 0.090 3.910 22 O -0.240 6.240 23 C -0.018 4.018 24 C -0.073 4.073 25 N -0.298 5.298 26 C -0.125 4.125 27 C -0.121 4.121 28 C -0.216 4.216 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.263 0.737 37 H 0.174 0.826 38 H 0.187 0.813 39 H 0.172 0.828 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.059 0.941 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.663 4.661 -25.737 27.553 hybrid contribution 0.123 0.701 0.615 0.940 sum 8.787 5.362 -25.123 27.150 Atomic orbital electron populations 1.22296 0.96315 1.02457 0.99861 1.18876 0.91776 0.93040 0.81904 0.95331 1.21374 1.31736 1.13219 0.90197 0.93550 1.25613 0.97168 0.99416 0.95279 1.69994 1.47084 1.42167 0.98595 0.85995 0.80059 0.80187 0.77040 1.17489 1.22320 1.18994 1.47114 1.51350 1.13413 1.22125 1.21862 1.01318 0.80169 1.03059 1.16139 0.79319 0.84550 0.80559 1.90867 1.63820 1.17955 1.77685 1.42577 1.56563 1.13491 1.19776 1.17474 0.90820 0.93379 0.88798 1.21086 1.05004 1.05230 0.88977 1.21143 0.92714 0.92568 1.00577 1.21464 1.05997 1.03765 0.93411 1.18915 0.90226 0.88625 0.93237 1.86187 1.54485 1.46160 1.37161 1.23136 0.94513 0.94858 0.89275 1.22234 0.92934 0.94893 0.97219 1.61867 1.14863 1.25910 1.27196 1.22457 0.95672 0.97798 0.96615 1.22368 0.98113 0.94034 0.97594 1.20419 1.00436 1.01315 0.99394 0.93907 0.92665 0.90803 0.92216 0.90218 0.90012 0.91109 0.73694 0.82614 0.81280 0.82816 0.90495 0.89781 0.89885 0.90688 0.93965 0.91328 0.91476 0.92008 0.91131 0.94130 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.37 8.67 71.98 0.62 -5.75 16 2 C 0.25 12.35 2.23 44.24 0.10 12.44 16 3 H 0.03 1.64 5.96 -2.38 -0.01 1.62 16 4 C -0.53 -30.29 8.57 25.60 0.22 -30.07 16 5 H 0.05 2.90 7.58 -2.91 -0.02 2.87 16 6 C 0.02 1.41 5.45 84.65 0.46 1.88 16 7 N -0.94 -58.58 13.96 21.44 0.30 -58.28 16 8 Si 0.94 46.19 24.37 68.60 1.67 47.86 16 9 H -0.25 -11.11 6.87 99.48 0.68 -10.43 16 10 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 11 H -0.26 -13.06 6.53 99.48 0.65 -12.41 16 12 N -0.61 -25.47 2.75 -844.85 -2.33 -27.79 16 13 C 0.08 2.39 9.24 127.77 1.18 3.57 16 14 C 0.69 29.81 8.12 179.06 1.45 31.26 16 15 O -0.62 -32.79 13.10 -4.02 -0.05 -32.84 16 16 N -0.67 -21.63 5.22 -317.22 -1.65 -23.28 16 17 C 0.19 6.00 6.30 38.13 0.24 6.24 16 18 C -0.18 -3.94 9.96 22.41 0.22 -3.71 16 19 C -0.05 -0.92 10.03 22.24 0.22 -0.69 16 20 C -0.23 -4.79 9.04 22.39 0.20 -4.58 16 21 C 0.14 4.16 6.68 22.49 0.15 4.31 16 22 O -0.33 -9.97 10.08 -92.40 -0.93 -10.90 16 23 C 0.06 1.07 4.80 71.98 0.35 1.42 16 24 C 0.05 0.96 5.34 86.30 0.46 1.42 16 25 N -0.57 -11.82 4.97 -948.84 -4.71 -16.53 16 26 C 0.02 0.35 9.33 127.69 1.19 1.54 16 27 C 0.03 0.46 9.57 127.69 1.22 1.68 16 28 C -0.19 -7.29 8.63 22.49 0.19 -7.10 16 29 H 0.04 1.86 3.27 -2.39 -0.01 1.85 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.07 2.81 7.67 -2.38 -0.02 2.79 16 32 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 1.93 6.30 -2.39 -0.02 1.92 16 35 H 0.07 2.47 7.02 -2.39 -0.02 2.46 16 36 H 0.42 9.99 6.52 -92.71 -0.60 9.38 16 37 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 38 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.15 2.17 6.29 -2.91 -0.02 2.15 16 40 H 0.08 1.18 5.85 -2.39 -0.01 1.17 16 41 H 0.08 1.22 7.66 -2.38 -0.02 1.20 16 42 H 0.08 0.95 8.12 -2.39 -0.02 0.93 16 43 H 0.07 1.48 8.06 -2.38 -0.02 1.47 16 44 H 0.04 0.49 8.14 -2.38 -0.02 0.47 16 45 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 46 H 0.07 1.06 6.37 -2.38 -0.02 1.04 16 47 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 48 H 0.07 1.16 8.12 -2.39 -0.02 1.14 16 49 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 50 H 0.10 4.75 6.22 -2.91 -0.02 4.73 16 Total: -1.00 -83.01 391.16 1.05 -81.96 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.27 Total: 25.96 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 8.49 Total: 13.85 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -8.39 Total: -125.89 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -0.98 Total: -43.74 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.67 Total: 47.86 kcal Total: -83.01 1.05 -81.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444396685.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.577 kcal (2) G-P(sol) polarization free energy of solvation -83.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds