Wall clock time and date at job start Tue Mar 31 2020 18:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47040 * 2 1 4 4 O 1.42905 * 109.47068 * 119.99772 * 2 1 3 5 5 C 1.42895 * 113.99875 * 270.00470 * 4 2 1 6 6 C 1.50706 * 109.47299 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99252 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00052 * 179.97438 * 6 5 4 9 9 C 1.46922 * 120.63232 * 359.72136 * 8 6 5 10 10 C 1.53627 * 108.54009 * 126.36695 * 9 8 6 11 11 C 1.53039 * 109.24350 * 54.85733 * 10 9 8 12 12 C 1.53001 * 109.46233 * 178.48600 * 11 10 9 13 13 C 1.50695 * 109.47040 * 295.07020 * 12 11 10 14 14 H 1.08000 * 120.00295 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99811 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99782 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99838 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47061 * 60.00061 * 17 15 13 19 19 H 1.48507 * 109.47002 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47413 * 299.99835 * 17 15 13 21 21 C 1.53040 * 109.53707 * 298.51014 * 11 10 9 22 22 C 1.46935 * 120.62795 * 179.97438 * 8 6 5 23 23 C 1.50694 * 109.47307 * 239.99872 * 2 1 3 24 24 N 1.30502 * 125.64996 * 285.17773 * 23 2 1 25 25 C 1.34128 * 109.25609 * 180.29462 * 24 23 2 26 26 C 1.34670 * 108.02237 * 359.72151 * 25 24 23 27 27 N 1.35046 * 125.65115 * 105.00393 * 23 2 1 28 28 C 1.46499 * 126.39639 * 359.97025 * 27 23 2 29 29 H 1.08999 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47508 * 300.00355 * 1 2 3 31 31 H 1.09002 * 109.46975 * 60.00349 * 1 2 3 32 32 H 1.09001 * 109.47135 * 299.99149 * 5 4 2 33 33 H 1.09000 * 109.47795 * 59.99748 * 5 4 2 34 34 H 1.09000 * 109.58243 * 246.19932 * 9 8 6 35 35 H 1.08988 * 109.58915 * 6.62508 * 9 8 6 36 36 H 1.08990 * 109.63450 * 294.86284 * 10 9 8 37 37 H 1.09002 * 109.45663 * 174.73720 * 10 9 8 38 38 H 1.09007 * 109.45103 * 58.51838 * 11 10 9 39 39 H 1.09001 * 109.46904 * 55.06686 * 12 11 10 40 40 H 1.08996 * 109.47353 * 175.06548 * 12 11 10 41 41 H 0.97010 * 119.99827 * 180.02562 * 16 15 13 42 42 H 1.09004 * 109.49632 * 301.41116 * 21 11 10 43 43 H 1.09007 * 109.52389 * 181.33451 * 21 11 10 44 44 H 1.09003 * 109.58614 * 353.37646 * 22 8 6 45 45 H 1.09000 * 109.58593 * 113.65765 * 22 8 6 46 46 H 1.07999 * 125.99228 * 179.72379 * 25 24 23 47 47 H 1.07997 * 126.59514 * 179.97438 * 26 25 24 48 48 H 1.09002 * 109.47391 * 269.71816 * 28 27 23 49 49 H 1.09001 * 109.46813 * 149.71873 * 28 27 23 50 50 H 1.09004 * 109.47041 * 29.72000 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1999 0.1830 2.2941 6 6 2.7001 -0.6283 3.4615 7 8 2.8732 -1.8225 3.3401 8 7 2.9550 -0.0267 4.6403 9 6 2.7560 1.4201 4.8008 10 6 1.8415 1.6559 6.0125 11 6 2.4410 0.9643 7.2391 12 6 1.5536 1.2276 8.4573 13 6 1.5681 2.6994 8.7806 14 1 2.1521 3.3790 8.1778 15 6 0.8356 3.1784 9.8461 16 7 0.1240 2.3508 10.5798 17 14 0.8541 5.0027 10.2473 18 1 0.3403 5.7704 9.0847 19 1 -0.0083 5.2584 11.4290 20 1 2.2445 5.4296 10.5470 21 6 2.5262 -0.5427 6.9864 22 6 3.4426 -0.8044 5.7876 23 6 2.0323 -0.7104 -1.2304 24 7 2.0241 -2.0016 -1.4198 25 6 2.5524 -2.2757 -2.6218 26 6 2.8956 -1.1097 -3.2018 27 7 2.5626 -0.1162 -2.3210 28 6 2.7516 1.3227 -2.5215 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.9319 0.9513 2.0451 33 1 1.2537 0.6547 2.5589 34 1 3.7181 1.9051 4.9658 35 1 2.2886 1.8264 3.9040 36 1 0.8525 1.2450 5.8103 37 1 1.7590 2.7260 6.2024 38 1 3.4401 1.3582 7.4257 39 1 0.5330 0.9138 8.2380 40 1 1.9314 0.6644 9.3106 41 1 -0.3916 2.6879 11.3293 42 1 1.5306 -0.9329 6.7751 43 1 2.9312 -1.0377 7.8690 44 1 3.4283 -1.8663 5.5419 45 1 4.4605 -0.4991 6.0299 46 1 2.6802 -3.2590 -3.0496 47 1 3.3473 -0.9829 -4.1745 48 1 1.8648 1.7431 -2.9956 49 1 3.6189 1.4896 -3.1604 50 1 2.9120 1.8058 -1.5577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584840733.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:35 Heat of formation + Delta-G solvation = -23.749569 kcal Electronic energy + Delta-G solvation = -28932.536297 eV Core-core repulsion = 24960.885799 eV Total energy + Delta-G solvation = -3971.650498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.38581 -40.10449 -38.32121 -37.08884 -34.37087 -34.03400 -32.63262 -32.15518 -30.91750 -28.96627 -28.59670 -27.44409 -27.34110 -24.52506 -23.82223 -22.86359 -21.87010 -21.55681 -20.13526 -19.92421 -18.74422 -17.73749 -17.17382 -16.62650 -16.31121 -16.26788 -16.00447 -15.50914 -14.99673 -14.67538 -14.55241 -14.23099 -13.83212 -13.71120 -13.64315 -13.41100 -13.24877 -13.15412 -13.09964 -12.91565 -12.70117 -12.41945 -12.24969 -12.21202 -11.81197 -11.32425 -11.21524 -11.02477 -10.83939 -10.71016 -10.49449 -10.16125 -10.15174 -10.03022 -9.88227 -9.76146 -9.53853 -9.28850 -9.00634 -8.69892 -8.39208 -8.35921 -6.02416 -4.04819 1.65457 2.25201 2.69154 2.76080 3.00369 3.28920 3.34793 3.35588 3.66754 4.03548 4.21422 4.30484 4.42074 4.57096 4.60153 4.64059 4.77851 4.83071 4.88369 5.00733 5.08036 5.14298 5.28840 5.31646 5.37845 5.39830 5.43782 5.46690 5.51457 5.62693 5.72042 5.88751 5.95736 5.97157 6.05927 6.33997 6.35745 6.46332 6.49793 6.61525 6.74630 6.87188 6.93679 6.96279 7.07674 7.52554 7.64162 7.79037 7.90823 7.97139 8.29320 8.38947 9.01495 9.58859 11.08680 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.002089 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.710334 B =13399.503372 C =14153.131480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.177 3.823 3 H 0.073 0.927 4 O -0.336 6.336 5 C 0.042 3.958 6 C 0.515 3.485 7 O -0.523 6.523 8 N -0.606 5.606 9 C 0.102 3.898 10 C -0.119 4.119 11 C -0.081 4.081 12 C 0.027 3.973 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.130 4.130 22 C 0.114 3.886 23 C 0.203 3.797 24 N -0.457 5.457 25 C -0.028 4.028 26 C -0.057 4.057 27 N -0.458 5.458 28 C 0.068 3.932 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.261 0.739 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.064 0.936 46 H 0.171 0.829 47 H 0.176 0.824 48 H 0.079 0.921 49 H 0.088 0.912 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.261 0.358 -27.226 27.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.116 3.884 3 H 0.090 0.910 4 O -0.252 6.252 5 C -0.038 4.038 6 C 0.301 3.699 7 O -0.399 6.399 8 N -0.341 5.341 9 C -0.021 4.021 10 C -0.157 4.157 11 C -0.100 4.100 12 C -0.010 4.010 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.168 4.168 22 C -0.007 4.007 23 C -0.059 4.059 24 N -0.175 5.175 25 C -0.177 4.177 26 C -0.190 4.190 27 N -0.143 5.143 28 C -0.075 4.075 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.083 0.917 46 H 0.188 0.812 47 H 0.193 0.807 48 H 0.098 0.902 49 H 0.107 0.893 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.995 -0.928 -26.594 27.075 hybrid contribution 0.268 2.079 -0.345 2.124 sum 5.263 1.151 -26.940 27.473 Atomic orbital electron populations 1.22241 0.93427 1.04474 1.02444 1.20038 0.94215 0.92943 0.81166 0.90951 1.88213 1.86366 1.32632 1.18013 1.22381 1.01400 0.93014 0.86973 1.20031 0.78350 0.88108 0.83381 1.90727 1.51490 1.14860 1.82774 1.48102 1.65925 1.09349 1.10731 1.22060 1.00599 0.79505 0.99903 1.21985 0.97877 1.02652 0.93205 1.21194 1.00255 0.91953 0.96550 1.19121 0.94252 0.96496 0.91088 1.21187 1.28140 0.93255 1.13000 0.92677 1.25033 0.95592 0.97520 0.96364 1.69954 1.30191 1.34442 1.18756 0.86702 0.77925 0.85795 0.77803 1.20326 1.21381 1.20314 1.22026 0.99570 0.98710 0.96466 1.21664 0.97212 0.96767 0.85095 1.22804 1.03222 0.89234 0.90652 1.70307 1.18696 1.11820 1.16718 1.22426 1.04274 0.98280 0.92732 1.22719 1.09797 0.88173 0.98295 1.45270 1.46471 1.07658 1.14853 1.22102 1.03587 0.77748 1.04071 0.90304 0.91091 0.91593 0.90495 0.89823 0.91247 0.90854 0.92134 0.89649 0.92312 0.96608 0.96552 0.92965 0.91981 0.91029 0.89569 0.91740 0.81151 0.80679 0.90213 0.89297 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 9.51 37.16 0.35 -1.14 16 2 C 0.18 1.80 3.09 -27.89 -0.09 1.71 16 3 H 0.07 0.49 6.38 -51.93 -0.33 0.16 16 4 O -0.34 -4.71 9.50 -55.14 -0.52 -5.24 16 5 C 0.04 0.49 4.57 36.01 0.16 0.65 16 6 C 0.51 8.03 7.78 -10.98 -0.09 7.94 16 7 O -0.52 -10.45 15.91 -14.35 -0.23 -10.67 16 8 N -0.61 -8.77 2.97 -172.53 -0.51 -9.28 16 9 C 0.10 1.27 6.37 -3.49 -0.02 1.25 16 10 C -0.12 -1.93 5.21 -26.39 -0.14 -2.06 16 11 C -0.08 -1.51 2.10 -90.58 -0.19 -1.70 16 12 C 0.03 0.67 4.45 -27.88 -0.12 0.54 16 13 C -0.52 -13.69 8.39 -34.44 -0.29 -13.98 16 14 H 0.06 1.39 7.06 -52.49 -0.37 1.02 16 15 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 17 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.13 -2.16 5.36 -26.64 -0.14 -2.31 16 22 C 0.11 1.72 6.43 -3.73 -0.02 1.70 16 23 C 0.20 2.39 6.79 -155.41 -1.05 1.33 16 24 N -0.46 -6.59 11.25 -10.82 -0.12 -6.71 16 25 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 26 C -0.06 -0.48 11.58 -16.56 -0.19 -0.67 16 27 N -0.46 -3.90 3.15 -121.28 -0.38 -4.29 16 28 C 0.07 0.26 10.94 59.85 0.65 0.91 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16 33 H 0.08 0.79 7.43 -51.93 -0.39 0.40 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.69 5.93 -51.94 -0.31 0.39 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.09 1.45 6.91 -51.93 -0.36 1.09 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.09 1.37 7.01 -51.93 -0.36 1.01 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16 47 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 48 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 49 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 50 H 0.09 0.25 6.90 -51.93 -0.36 -0.11 16 LS Contribution 402.30 15.07 6.06 6.06 Total: -1.00 -36.91 402.30 -9.82 -46.74 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -8.35 Total: -2.06 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -1.48 Total: -4.89 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.28 Total: -45.77 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.75 Total: -15.91 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.91 -9.82 -46.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584840733.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.987 kcal (2) G-P(sol) polarization free energy of solvation -36.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds