Wall clock time and date at job start Tue Mar 31 2020 18:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47040 * 2 1 4 4 O 1.42905 * 109.47068 * 119.99772 * 2 1 3 5 5 C 1.42895 * 113.99875 * 270.00470 * 4 2 1 6 6 C 1.50706 * 109.47299 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99252 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00052 * 179.97438 * 6 5 4 9 9 C 1.46922 * 120.63232 * 359.72136 * 8 6 5 10 10 C 1.53627 * 108.54009 * 126.36695 * 9 8 6 11 11 C 1.53039 * 109.24350 * 54.85733 * 10 9 8 12 12 C 1.53001 * 109.46233 * 178.48600 * 11 10 9 13 13 C 1.50695 * 109.47040 * 295.07020 * 12 11 10 14 14 H 1.08000 * 120.00295 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99811 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99782 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99838 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47061 * 60.00061 * 17 15 13 19 19 H 1.48507 * 109.47002 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47413 * 299.99835 * 17 15 13 21 21 C 1.53040 * 109.53707 * 298.51014 * 11 10 9 22 22 C 1.46935 * 120.62795 * 179.97438 * 8 6 5 23 23 C 1.50694 * 109.47307 * 239.99872 * 2 1 3 24 24 N 1.30502 * 125.64996 * 285.17773 * 23 2 1 25 25 C 1.34128 * 109.25609 * 180.29462 * 24 23 2 26 26 C 1.34670 * 108.02237 * 359.72151 * 25 24 23 27 27 N 1.35046 * 125.65115 * 105.00393 * 23 2 1 28 28 C 1.46499 * 126.39639 * 359.97025 * 27 23 2 29 29 H 1.08999 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47508 * 300.00355 * 1 2 3 31 31 H 1.09002 * 109.46975 * 60.00349 * 1 2 3 32 32 H 1.09001 * 109.47135 * 299.99149 * 5 4 2 33 33 H 1.09000 * 109.47795 * 59.99748 * 5 4 2 34 34 H 1.09000 * 109.58243 * 246.19932 * 9 8 6 35 35 H 1.08988 * 109.58915 * 6.62508 * 9 8 6 36 36 H 1.08990 * 109.63450 * 294.86284 * 10 9 8 37 37 H 1.09002 * 109.45663 * 174.73720 * 10 9 8 38 38 H 1.09007 * 109.45103 * 58.51838 * 11 10 9 39 39 H 1.09001 * 109.46904 * 55.06686 * 12 11 10 40 40 H 1.08996 * 109.47353 * 175.06548 * 12 11 10 41 41 H 0.97010 * 119.99827 * 180.02562 * 16 15 13 42 42 H 1.09004 * 109.49632 * 301.41116 * 21 11 10 43 43 H 1.09007 * 109.52389 * 181.33451 * 21 11 10 44 44 H 1.09003 * 109.58614 * 353.37646 * 22 8 6 45 45 H 1.09000 * 109.58593 * 113.65765 * 22 8 6 46 46 H 1.07999 * 125.99228 * 179.72379 * 25 24 23 47 47 H 1.07997 * 126.59514 * 179.97438 * 26 25 24 48 48 H 1.09002 * 109.47391 * 269.71816 * 28 27 23 49 49 H 1.09001 * 109.46813 * 149.71873 * 28 27 23 50 50 H 1.09004 * 109.47041 * 29.72000 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1999 0.1830 2.2941 6 6 2.7001 -0.6283 3.4615 7 8 2.8732 -1.8225 3.3401 8 7 2.9550 -0.0267 4.6403 9 6 2.7560 1.4201 4.8008 10 6 1.8415 1.6559 6.0125 11 6 2.4410 0.9643 7.2391 12 6 1.5536 1.2276 8.4573 13 6 1.5681 2.6994 8.7806 14 1 2.1521 3.3790 8.1778 15 6 0.8356 3.1784 9.8461 16 7 0.1240 2.3508 10.5798 17 14 0.8541 5.0027 10.2473 18 1 0.3403 5.7704 9.0847 19 1 -0.0083 5.2584 11.4290 20 1 2.2445 5.4296 10.5470 21 6 2.5262 -0.5427 6.9864 22 6 3.4426 -0.8044 5.7876 23 6 2.0323 -0.7104 -1.2304 24 7 2.0241 -2.0016 -1.4198 25 6 2.5524 -2.2757 -2.6218 26 6 2.8956 -1.1097 -3.2018 27 7 2.5626 -0.1162 -2.3210 28 6 2.7516 1.3227 -2.5215 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.9319 0.9513 2.0451 33 1 1.2537 0.6547 2.5589 34 1 3.7181 1.9051 4.9658 35 1 2.2886 1.8264 3.9040 36 1 0.8525 1.2450 5.8103 37 1 1.7590 2.7260 6.2024 38 1 3.4401 1.3582 7.4257 39 1 0.5330 0.9138 8.2380 40 1 1.9314 0.6644 9.3106 41 1 -0.3916 2.6879 11.3293 42 1 1.5306 -0.9329 6.7751 43 1 2.9312 -1.0377 7.8690 44 1 3.4283 -1.8663 5.5419 45 1 4.4605 -0.4991 6.0299 46 1 2.6802 -3.2590 -3.0496 47 1 3.3473 -0.9829 -4.1745 48 1 1.8648 1.7431 -2.9956 49 1 3.6189 1.4896 -3.1604 50 1 2.9120 1.8058 -1.5577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584840733.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:34 Heat of formation + Delta-G solvation = -46.959577 kcal Electronic energy + Delta-G solvation = -28933.542759 eV Core-core repulsion = 24960.885799 eV Total energy + Delta-G solvation = -3972.656960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.05199 -41.27175 -39.29936 -38.37083 -35.68997 -34.94983 -34.05432 -33.30231 -32.15726 -30.06404 -29.62871 -28.69898 -27.79837 -26.14289 -24.58346 -24.10332 -23.39416 -22.27804 -21.33276 -20.82999 -19.97042 -18.55295 -18.36529 -18.01758 -17.55351 -17.11396 -16.80333 -16.50703 -16.47041 -15.77230 -15.54494 -15.26622 -15.02204 -14.88689 -14.50620 -14.48223 -14.27100 -14.20500 -13.98935 -13.75582 -13.59029 -13.45567 -13.39896 -13.18271 -12.98538 -12.93454 -12.71924 -12.46311 -12.31009 -12.11040 -12.02669 -11.75126 -11.33515 -11.11346 -10.92913 -10.83606 -10.80223 -10.71124 -10.53803 -10.48534 -9.62166 -9.38423 -8.13132 -6.22979 0.99596 1.44361 1.46836 1.53612 1.54226 1.60352 1.94707 2.18100 2.45523 2.88033 3.20598 3.35861 3.50376 3.81344 3.92084 3.95878 4.04620 4.07951 4.10218 4.13700 4.14755 4.22362 4.29440 4.42977 4.45040 4.54781 4.56191 4.65286 4.70085 4.71225 4.75601 4.82769 4.83362 4.91063 4.97483 5.12375 5.21569 5.31075 5.33165 5.35360 5.43369 5.56464 5.61099 5.81842 5.84808 5.92450 5.99936 6.24976 6.31157 6.42755 6.94173 7.14744 7.20774 7.45849 8.98620 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.002089 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.710334 B =13399.503372 C =14153.131480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.173 3.827 3 H 0.115 0.885 4 O -0.377 6.377 5 C 0.044 3.956 6 C 0.507 3.493 7 O -0.579 6.579 8 N -0.605 5.605 9 C 0.109 3.891 10 C -0.115 4.115 11 C -0.074 4.074 12 C 0.031 3.969 13 C -0.524 4.524 14 H 0.071 0.929 15 C -0.007 4.007 16 N -0.939 5.939 17 Si 0.962 3.038 18 H -0.262 1.262 19 H -0.293 1.293 20 H -0.267 1.267 21 C -0.122 4.122 22 C 0.120 3.880 23 C 0.181 3.819 24 N -0.520 5.520 25 C -0.069 4.069 26 C -0.038 4.038 27 N -0.453 5.453 28 C 0.057 3.943 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.065 0.935 39 H -0.017 1.017 40 H -0.017 1.017 41 H 0.260 0.740 42 H 0.043 0.957 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.178 0.822 47 H 0.216 0.784 48 H 0.097 0.903 49 H 0.109 0.891 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.663 4.348 -29.903 30.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.114 3.886 3 H 0.132 0.868 4 O -0.295 6.295 5 C -0.034 4.034 6 C 0.296 3.704 7 O -0.459 6.459 8 N -0.339 5.339 9 C -0.013 4.013 10 C -0.153 4.153 11 C -0.092 4.092 12 C -0.006 4.006 13 C -0.562 4.562 14 H 0.089 0.911 15 C -0.204 4.204 16 N -0.580 5.580 17 Si 0.787 3.213 18 H -0.187 1.187 19 H -0.219 1.219 20 H -0.192 1.192 21 C -0.160 4.160 22 C -0.003 4.003 23 C -0.082 4.082 24 N -0.239 5.239 25 C -0.217 4.217 26 C -0.171 4.171 27 N -0.136 5.136 28 C -0.084 4.084 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.128 0.872 34 H 0.110 0.890 35 H 0.134 0.866 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.002 0.998 40 H 0.001 0.999 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.195 0.805 47 H 0.232 0.768 48 H 0.115 0.885 49 H 0.128 0.872 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.408 3.120 -29.290 30.145 hybrid contribution -0.175 0.790 0.485 0.943 sum 6.232 3.909 -28.805 29.730 Atomic orbital electron populations 1.22209 0.93101 1.02741 1.04062 1.20331 0.94496 0.94373 0.79398 0.86776 1.88174 1.86897 1.34906 1.19534 1.22515 1.03560 0.92428 0.84941 1.20882 0.77214 0.87814 0.84462 1.90704 1.53894 1.17485 1.83783 1.48206 1.65218 1.10199 1.10258 1.22182 1.01117 0.78254 0.99704 1.21884 0.98058 1.01736 0.93654 1.21050 0.99268 0.93485 0.95436 1.19029 0.93504 0.95479 0.92572 1.21641 1.27515 0.94251 1.12793 0.91057 1.26018 0.95341 1.02565 0.96453 1.70123 1.31510 1.36829 1.19530 0.85541 0.78226 0.79820 0.77694 1.18655 1.21885 1.19198 1.21902 0.99169 0.97414 0.97514 1.21525 0.97618 0.96534 0.84592 1.23072 1.04060 0.88996 0.92053 1.70195 1.20726 1.14224 1.18779 1.22777 1.06107 1.00054 0.92785 1.23282 1.07580 0.87228 0.99054 1.45542 1.44914 1.09486 1.13683 1.22510 1.05418 0.74885 1.05584 0.93722 0.89694 0.89613 0.86399 0.87207 0.89044 0.86638 0.93464 0.90010 0.91614 0.99833 0.99897 0.93167 0.93790 0.91259 0.90879 0.89731 0.80516 0.76786 0.88450 0.87223 0.88186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.51 71.98 0.68 -1.98 16 2 C 0.17 3.15 3.09 29.85 0.09 3.24 16 3 H 0.11 1.01 6.38 -2.39 -0.02 0.99 16 4 O -0.38 -10.13 9.50 -129.94 -1.23 -11.36 16 5 C 0.04 0.89 4.57 71.24 0.33 1.21 16 6 C 0.51 15.11 7.78 87.66 0.68 15.79 16 7 O -0.58 -23.59 15.91 16.01 0.25 -23.33 16 8 N -0.60 -16.25 2.97 -818.15 -2.43 -18.68 16 9 C 0.11 2.28 6.37 86.51 0.55 2.83 16 10 C -0.12 -3.51 5.21 30.82 0.16 -3.35 16 11 C -0.07 -2.74 2.10 -10.77 -0.02 -2.76 16 12 C 0.03 1.57 4.45 29.85 0.13 1.70 16 13 C -0.52 -27.71 8.39 25.60 0.21 -27.50 16 14 H 0.07 3.47 7.06 -2.91 -0.02 3.44 16 15 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 16 N -0.94 -56.57 13.29 21.45 0.28 -56.28 16 17 Si 0.96 42.37 29.54 68.60 2.03 44.39 16 18 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 19 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 C -0.12 -4.14 5.36 30.66 0.16 -3.98 16 22 C 0.12 3.53 6.43 86.34 0.55 4.09 16 23 C 0.18 4.06 6.79 138.13 0.94 5.00 16 24 N -0.52 -15.46 11.25 -188.13 -2.12 -17.58 16 25 C -0.07 -1.55 11.87 83.52 0.99 -0.56 16 26 C -0.04 -0.55 11.58 83.09 0.96 0.41 16 27 N -0.45 -6.54 3.15 -537.61 -1.69 -8.24 16 28 C 0.06 0.19 10.94 127.77 1.40 1.58 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.10 7.87 -2.39 -0.02 1.08 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.12 1.37 7.87 -2.39 -0.02 1.35 16 33 H 0.11 1.59 7.43 -2.39 -0.02 1.58 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.12 1.51 5.93 -2.39 -0.01 1.50 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 2.57 6.91 -2.39 -0.02 2.55 16 38 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 39 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 40 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 41 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 42 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 44 H 0.07 2.38 7.01 -2.39 -0.02 2.37 16 45 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.18 3.23 8.06 -2.91 -0.02 3.21 16 47 H 0.22 1.18 8.06 -2.91 -0.02 1.15 16 48 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 49 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 50 H 0.10 0.08 6.90 -2.38 -0.02 0.06 16 Total: -1.00 -87.57 402.30 4.30 -83.27 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.92 Total: 11.99 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 8.29 Total: -4.17 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -5.95 Total: -100.78 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.98 Total: -34.70 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -87.57 4.30 -83.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584840733.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.315 kcal (2) G-P(sol) polarization free energy of solvation -87.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds