Wall clock time and date at job start Tue Mar 31 2020 18:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47045 * 2 1 4 4 O 1.42892 * 109.47542 * 240.00279 * 2 1 3 5 5 C 1.42899 * 114.00483 * 89.99593 * 4 2 1 6 6 C 1.50697 * 109.47650 * 180.02562 * 5 4 2 7 7 O 1.21290 * 119.99767 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00295 * 180.02562 * 6 5 4 9 9 C 1.46928 * 120.63152 * 359.72095 * 8 6 5 10 10 C 1.53619 * 108.54404 * 126.36836 * 9 8 6 11 11 C 1.53037 * 109.24214 * 54.85776 * 10 9 8 12 12 C 1.53000 * 109.45849 * 178.48859 * 11 10 9 13 13 C 1.50699 * 109.47445 * 295.06849 * 12 11 10 14 14 H 1.07997 * 119.99598 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00405 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99739 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00226 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47141 * 90.00140 * 17 15 13 19 19 H 1.48502 * 109.47415 * 209.99939 * 17 15 13 20 20 H 1.48502 * 109.47381 * 330.00125 * 17 15 13 21 21 C 1.53036 * 109.53841 * 298.50576 * 11 10 9 22 22 C 1.46930 * 120.62983 * 180.02562 * 8 6 5 23 23 C 1.50700 * 109.47181 * 119.99451 * 2 1 3 24 24 N 1.30502 * 125.64425 * 75.28055 * 23 2 1 25 25 C 1.34127 * 109.25683 * 180.14781 * 24 23 2 26 26 C 1.34672 * 108.01948 * 359.61488 * 25 24 23 27 27 N 1.35041 * 125.65474 * 255.00180 * 23 2 1 28 28 C 1.46499 * 126.39624 * 0.02562 * 27 23 2 29 29 H 1.09002 * 109.46580 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47234 * 299.99704 * 1 2 3 31 31 H 1.09000 * 109.46968 * 60.00631 * 1 2 3 32 32 H 1.09001 * 109.46957 * 300.00572 * 5 4 2 33 33 H 1.09001 * 109.46958 * 60.00319 * 5 4 2 34 34 H 1.09003 * 109.58448 * 246.20556 * 9 8 6 35 35 H 1.09005 * 109.58373 * 6.62274 * 9 8 6 36 36 H 1.09001 * 109.63736 * 294.86420 * 10 9 8 37 37 H 1.09000 * 109.45559 * 174.73989 * 10 9 8 38 38 H 1.09000 * 109.45010 * 58.52702 * 11 10 9 39 39 H 1.09008 * 109.47314 * 55.07164 * 12 11 10 40 40 H 1.09000 * 109.47259 * 175.06868 * 12 11 10 41 41 H 0.97007 * 120.00255 * 180.02562 * 16 15 13 42 42 H 1.09000 * 109.50197 * 301.42033 * 21 11 10 43 43 H 1.08999 * 109.52704 * 181.32983 * 21 11 10 44 44 H 1.08999 * 109.59004 * 353.36893 * 22 8 6 45 45 H 1.09001 * 109.58657 * 113.65662 * 22 8 6 46 46 H 1.08002 * 125.99481 * 179.88589 * 25 24 23 47 47 H 1.07997 * 126.59503 * 180.24939 * 26 25 24 48 48 H 1.09002 * 109.47096 * 269.97154 * 28 27 23 49 49 H 1.08994 * 109.47272 * 29.97187 * 28 27 23 50 50 H 1.09002 * 109.47111 * 149.97482 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 -1.1667 5 6 2.2001 0.1830 -2.2940 6 6 2.7004 -0.6283 -3.4613 7 8 2.8744 -1.8224 -3.3397 8 7 2.9554 -0.0267 -4.6401 9 6 2.7448 1.4181 -4.8043 10 6 4.0422 2.0433 -5.3388 11 6 4.4599 1.3197 -6.6210 12 6 5.7312 1.9631 -7.1783 13 6 5.4352 3.3802 -7.5968 14 1 4.4398 3.7817 -7.4776 15 6 6.4350 4.1640 -8.1328 16 7 7.6468 3.6746 -8.2793 17 14 6.0679 5.9203 -8.6521 18 1 6.3061 6.8352 -7.5069 19 1 6.9557 6.2986 -9.7808 20 1 4.6500 6.0235 -9.0815 21 6 4.7280 -0.1550 -6.3123 22 6 3.4431 -0.8045 -5.7874 23 6 2.0324 -0.7103 1.2305 24 7 2.0318 -2.0020 1.4165 25 6 2.5484 -2.2753 2.6238 26 6 2.8896 -1.1092 3.2046 27 7 2.5625 -0.1160 2.3211 28 6 2.7515 1.3228 2.5216 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.2538 0.6547 -2.5588 33 1 2.9320 0.9514 -2.0450 34 1 1.9339 1.5910 -5.5120 35 1 2.4930 1.8624 -3.8413 36 1 4.8306 1.9454 -4.5925 37 1 3.8746 3.0985 -5.5547 38 1 3.6607 1.3970 -7.3582 39 1 6.5044 1.9651 -6.4099 40 1 6.0781 1.3944 -8.0411 41 1 8.3504 4.2260 -8.6561 42 1 5.5098 -0.2323 -5.5568 43 1 5.0482 -0.6651 -7.2208 44 1 3.6523 -1.8270 -5.4733 45 1 2.6869 -0.8108 -6.5724 46 1 2.6733 -3.2585 3.0529 47 1 3.3359 -0.9819 4.1798 48 1 3.7345 1.6151 2.1520 49 1 1.9815 1.8697 1.9776 50 1 2.6794 1.5542 3.5843 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584840734.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:37 Heat of formation + Delta-G solvation = -47.421016 kcal Electronic energy + Delta-G solvation = -28984.852721 eV Core-core repulsion = 25012.175752 eV Total energy + Delta-G solvation = -3972.676969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.05730 -41.27078 -39.29866 -38.37051 -35.69513 -34.95741 -34.05904 -33.29966 -32.15515 -30.06918 -29.62669 -28.70004 -27.81534 -26.14740 -24.56346 -24.10779 -23.39753 -22.28876 -21.33397 -20.84402 -19.97671 -18.56175 -18.37700 -18.01558 -17.51185 -17.13229 -16.81306 -16.54779 -16.47775 -15.69904 -15.53791 -15.28653 -15.03819 -14.90818 -14.59148 -14.41101 -14.29837 -14.23468 -13.93220 -13.77129 -13.63048 -13.46139 -13.35839 -13.18069 -12.98157 -12.94199 -12.69131 -12.49454 -12.30154 -12.11502 -12.04047 -11.74428 -11.34480 -11.11754 -10.94125 -10.83530 -10.79583 -10.71251 -10.55833 -10.50091 -9.62181 -9.38987 -8.14120 -6.23930 0.98354 1.43602 1.44949 1.54172 1.55370 1.59874 1.94489 2.17503 2.44837 2.87706 3.19868 3.35791 3.50919 3.83896 3.91540 3.95643 4.03842 4.07047 4.11469 4.12724 4.15026 4.21931 4.29621 4.41354 4.42695 4.54648 4.55783 4.67500 4.69117 4.70188 4.74980 4.83085 4.84355 4.90868 4.96879 5.11768 5.22493 5.30963 5.32807 5.34541 5.42571 5.55871 5.60707 5.80957 5.84007 5.91715 6.00005 6.24236 6.30473 6.42696 6.93553 7.14710 7.19437 7.45131 8.97982 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015826 B = 0.002210 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.797336 B =12667.469815 C =13446.066793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.171 3.829 3 H 0.111 0.889 4 O -0.377 6.377 5 C 0.045 3.955 6 C 0.507 3.493 7 O -0.579 6.579 8 N -0.605 5.605 9 C 0.109 3.891 10 C -0.115 4.115 11 C -0.074 4.074 12 C 0.031 3.969 13 C -0.523 4.523 14 H 0.072 0.928 15 C -0.007 4.007 16 N -0.940 5.940 17 Si 0.962 3.038 18 H -0.272 1.272 19 H -0.291 1.291 20 H -0.258 1.258 21 C -0.122 4.122 22 C 0.120 3.880 23 C 0.180 3.820 24 N -0.518 5.518 25 C -0.069 4.069 26 C -0.039 4.039 27 N -0.454 5.454 28 C 0.056 3.944 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.066 0.934 39 H -0.017 1.017 40 H -0.017 1.017 41 H 0.260 0.740 42 H 0.042 0.958 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.178 0.822 47 H 0.214 0.786 48 H 0.086 0.914 49 H 0.106 0.894 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.988 0.379 23.038 28.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.112 3.888 3 H 0.128 0.872 4 O -0.295 6.295 5 C -0.034 4.034 6 C 0.296 3.704 7 O -0.459 6.459 8 N -0.339 5.339 9 C -0.013 4.013 10 C -0.153 4.153 11 C -0.092 4.092 12 C -0.006 4.006 13 C -0.561 4.561 14 H 0.090 0.910 15 C -0.203 4.203 16 N -0.581 5.581 17 Si 0.787 3.213 18 H -0.198 1.198 19 H -0.218 1.218 20 H -0.182 1.182 21 C -0.160 4.160 22 C -0.003 4.003 23 C -0.083 4.083 24 N -0.237 5.237 25 C -0.217 4.217 26 C -0.173 4.173 27 N -0.138 5.138 28 C -0.084 4.084 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.139 0.861 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.133 0.867 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.001 0.999 40 H 0.001 0.999 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.196 0.804 47 H 0.231 0.769 48 H 0.104 0.896 49 H 0.124 0.876 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.968 -0.805 22.496 27.599 hybrid contribution 1.195 1.027 -0.073 1.578 sum -14.773 0.222 22.423 26.853 Atomic orbital electron populations 1.22204 0.92502 1.02915 1.04246 1.20357 0.94879 0.94215 0.79322 0.87175 1.88171 1.86976 1.34804 1.19550 1.22513 1.03704 0.92247 0.84953 1.20885 0.77395 0.87847 0.84251 1.90706 1.53997 1.17603 1.83574 1.48206 1.64854 1.10232 1.10589 1.22188 0.97755 0.77436 1.03896 1.21884 0.96694 1.00524 0.96219 1.21048 0.98114 0.92917 0.97163 1.19031 0.92994 0.94792 0.93752 1.21674 0.96315 0.98256 1.39863 0.91032 1.26009 0.94963 1.03135 0.96231 1.70129 1.02757 1.38421 1.46782 0.85490 0.78536 0.79527 0.77748 1.19792 1.21758 1.18214 1.21916 0.96821 0.96801 1.00446 1.21548 0.95764 0.95251 0.87723 1.23152 1.03993 0.89012 0.92097 1.70187 1.20872 1.14123 1.18552 1.22781 1.06297 1.00011 0.92591 1.23285 1.07593 0.87342 0.99070 1.45547 1.44969 1.09469 1.13775 1.22497 1.04668 0.74985 1.06282 0.93514 0.89651 0.89196 0.86088 0.87548 0.88966 0.86650 0.93568 0.89965 0.91564 0.99891 0.99894 0.93153 0.93893 0.91255 0.90893 0.89637 0.80440 0.76907 0.89562 0.87578 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.51 71.98 0.68 -1.63 16 2 C 0.17 3.11 2.99 29.85 0.09 3.20 16 3 H 0.11 1.07 6.72 -2.38 -0.02 1.06 16 4 O -0.38 -10.14 9.50 -129.94 -1.23 -11.37 16 5 C 0.04 0.89 4.57 71.24 0.33 1.22 16 6 C 0.51 15.13 7.78 87.66 0.68 15.81 16 7 O -0.58 -23.61 15.91 15.98 0.25 -23.36 16 8 N -0.60 -16.26 2.97 -817.95 -2.43 -18.69 16 9 C 0.11 2.28 6.37 86.51 0.55 2.83 16 10 C -0.12 -3.49 5.21 30.81 0.16 -3.33 16 11 C -0.07 -2.74 2.10 -10.77 -0.02 -2.76 16 12 C 0.03 1.58 4.45 29.85 0.13 1.71 16 13 C -0.52 -27.62 8.39 25.60 0.21 -27.40 16 14 H 0.07 3.48 7.06 -2.91 -0.02 3.46 16 15 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 16 N -0.94 -56.52 13.29 21.45 0.28 -56.24 16 17 Si 0.96 42.28 29.54 68.60 2.03 44.30 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 19 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 21 C -0.12 -4.14 5.36 30.69 0.16 -3.98 16 22 C 0.12 3.53 6.43 86.38 0.56 4.08 16 23 C 0.18 4.16 6.79 138.13 0.94 5.10 16 24 N -0.52 -15.61 11.25 -188.13 -2.12 -17.73 16 25 C -0.07 -1.60 11.87 83.52 0.99 -0.60 16 26 C -0.04 -0.62 11.58 83.09 0.96 0.34 16 27 N -0.45 -7.14 3.15 -537.61 -1.69 -8.84 16 28 C 0.06 0.28 10.75 127.77 1.37 1.65 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.88 7.87 -2.39 -0.02 0.86 16 32 H 0.12 1.42 7.66 -2.39 -0.02 1.40 16 33 H 0.11 1.55 7.65 -2.39 -0.02 1.53 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.12 1.51 5.93 -2.38 -0.01 1.50 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 2.57 6.91 -2.39 -0.02 2.56 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 39 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 40 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 41 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.07 2.38 7.01 -2.39 -0.02 2.36 16 45 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.18 3.36 8.06 -2.91 -0.02 3.33 16 47 H 0.21 1.47 8.06 -2.91 -0.02 1.45 16 48 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 49 H 0.11 0.14 7.33 -2.39 -0.02 0.12 16 50 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 Total: -1.00 -87.38 402.78 4.27 -83.10 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.91 Total: 12.48 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 8.26 Total: -3.66 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -5.95 Total: -101.50 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.98 Total: -34.73 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -87.38 4.27 -83.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584840734.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.682 kcal (2) G-P(sol) polarization free energy of solvation -87.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds