Wall clock time and date at job start Tue Mar 31 2020 18:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46891 * 2 1 4 4 C 1.52995 * 109.47403 * 239.99772 * 2 1 3 5 5 C 1.53003 * 109.47382 * 174.99823 * 4 2 1 6 6 C 1.50696 * 109.47121 * 179.97438 * 5 4 2 7 7 C 1.34854 * 125.89121 * 85.32750 * 6 5 4 8 8 C 1.40890 * 107.41722 * 180.15763 * 7 6 5 9 9 C 1.34856 * 107.41764 * 359.55980 * 8 7 6 10 10 N 1.36337 * 108.21648 * 0.27154 * 9 8 7 11 11 C 1.46501 * 125.63461 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.46984 * 119.99676 * 2 1 3 13 13 C 1.34779 * 119.99818 * 274.99836 * 12 2 1 14 14 O 1.21580 * 120.00039 * 0.02562 * 13 12 2 15 15 N 1.34778 * 119.99499 * 179.97438 * 13 12 2 16 16 C 1.47017 * 125.65499 * 0.02702 * 15 13 12 17 17 C 1.54320 * 107.27755 * 181.01969 * 16 15 13 18 18 C 1.55161 * 102.93820 * 22.19693 * 17 16 15 19 19 O 1.42897 * 111.00709 * 82.57175 * 18 17 16 20 20 C 1.50696 * 111.00351 * 206.38546 * 18 17 16 21 21 H 1.08003 * 120.00292 * 359.97438 * 20 18 17 22 22 C 1.37878 * 120.00398 * 179.97438 * 20 18 17 23 23 N 1.31518 * 119.99674 * 0.02562 * 22 20 18 24 24 Si 1.86795 * 120.00287 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47273 * 60.00190 * 24 22 20 26 26 H 1.48505 * 109.47114 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47379 * 300.00114 * 24 22 20 28 28 C 1.47433 * 125.64521 * 179.72111 * 15 13 12 29 29 H 1.09001 * 109.47305 * 60.00597 * 1 2 3 30 30 H 1.09000 * 109.46891 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47399 * 300.00195 * 1 2 3 32 32 H 1.09003 * 109.47129 * 55.00018 * 4 2 1 33 33 H 1.09007 * 109.47152 * 295.00165 * 4 2 1 34 34 H 1.09003 * 109.46829 * 60.00011 * 5 4 2 35 35 H 1.08993 * 109.47124 * 300.00112 * 5 4 2 36 36 H 1.07999 * 126.28920 * 0.02562 * 7 6 5 37 37 H 1.08002 * 126.29400 * 179.83402 * 8 7 6 38 38 H 1.07996 * 125.89292 * 180.28042 * 9 8 7 39 39 H 1.08998 * 109.47589 * 90.02245 * 11 10 9 40 40 H 1.09001 * 109.46859 * 210.01941 * 11 10 9 41 41 H 1.08998 * 109.47009 * 330.02029 * 11 10 9 42 42 H 0.97001 * 120.00395 * 95.00461 * 12 2 1 43 43 H 1.09004 * 109.88476 * 300.44465 * 16 15 13 44 44 H 1.09000 * 109.88096 * 61.60349 * 16 15 13 45 45 H 1.09001 * 110.71965 * 140.55474 * 17 16 15 46 46 H 1.08991 * 110.72599 * 263.65519 * 17 16 15 47 47 H 0.96697 * 114.00457 * 180.02562 * 19 18 17 48 48 H 0.96994 * 120.00060 * 179.97438 * 23 22 20 49 49 H 1.09000 * 110.36158 * 274.74744 * 28 15 13 50 50 H 1.08995 * 110.36624 * 37.06849 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3136 6 6 4.0673 -1.3242 -2.5437 7 6 4.1577 -0.7955 -3.7809 8 6 4.6705 -1.7956 -4.6305 9 6 4.8831 -2.8944 -3.8782 10 7 4.5146 -2.6112 -2.5965 11 6 4.5869 -3.5368 -1.4632 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8574 1.1615 2.4117 15 7 2.5957 -0.6536 3.4577 16 6 2.9795 -2.0708 3.5324 17 6 3.4023 -2.3550 4.9891 18 6 2.6953 -1.2247 5.7829 19 8 1.3342 -1.5642 6.0552 20 6 3.4370 -0.9145 7.0575 21 1 4.3358 -1.4595 7.3056 22 6 2.9682 0.0651 7.9070 23 7 1.8734 0.7284 7.6051 24 14 3.8872 0.4491 9.4873 25 1 5.2686 0.8868 9.1627 26 1 3.1829 1.5330 10.2185 27 1 3.9402 -0.7674 10.3372 28 6 2.7891 -0.0410 4.7847 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6054 -0.2618 -2.1369 33 1 1.7517 -1.7716 -1.2055 34 1 3.9995 -1.0727 -0.4258 35 1 3.8532 0.4369 -1.3573 36 1 3.8850 0.2093 -4.0681 37 1 4.8627 -1.6986 -5.6889 38 1 5.2773 -3.8362 -4.2302 39 1 5.5589 -3.4431 -0.9789 40 1 3.8000 -3.2975 -0.7479 41 1 4.4555 -4.5584 -1.8196 42 1 2.2490 -1.6317 1.1528 43 1 2.1305 -2.6994 3.2634 44 1 3.8147 -2.2646 2.8594 45 1 3.0452 -3.3334 5.3104 46 1 4.4847 -2.2867 5.0968 47 1 0.8513 -0.8876 6.5493 48 1 1.5434 1.4173 8.2029 49 1 3.7692 0.4322 4.8448 50 1 2.0027 0.6867 4.9849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591968562.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:30 Heat of formation + Delta-G solvation = -36.796162 kcal Electronic energy + Delta-G solvation = -29672.028992 eV Core-core repulsion = 25699.812751 eV Total energy + Delta-G solvation = -3972.216241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38217 -39.76030 -37.71814 -36.14642 -34.24835 -33.02653 -32.79400 -32.15153 -30.84378 -29.55215 -27.76359 -27.65255 -26.55821 -25.08527 -23.83183 -22.69481 -20.92924 -20.73691 -19.64600 -19.54887 -19.23831 -17.58622 -17.09176 -17.01441 -16.12898 -15.46783 -15.21837 -15.08111 -14.66685 -14.44901 -14.34352 -13.93602 -13.59092 -13.52730 -13.28840 -13.09706 -13.01408 -12.80662 -12.63106 -12.45267 -12.23841 -12.16155 -12.04915 -11.88927 -11.64261 -11.56252 -11.34645 -11.07307 -11.03548 -10.82299 -10.79229 -10.61102 -10.51244 -10.19120 -9.59781 -9.39820 -8.83381 -8.75259 -8.68486 -8.37553 -8.12285 -7.67995 -6.29442 -4.39199 2.08235 2.78161 2.89492 3.13624 3.22002 3.27276 3.28951 3.76931 4.24380 4.41693 4.49077 4.52668 4.77319 4.87095 4.94426 4.95806 4.97515 5.11108 5.15406 5.32997 5.38638 5.45073 5.51732 5.54766 5.56830 5.61855 5.71513 5.76098 5.79145 5.93729 5.99745 6.03885 6.15034 6.17422 6.23248 6.32870 6.49075 6.68881 6.84490 6.86391 6.89929 6.96764 7.09182 7.21568 7.23021 7.32102 7.64645 7.74028 7.99916 8.54836 8.65001 9.16091 9.30563 9.45925 10.77757 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018868 B = 0.002508 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.605236 B =11160.797989 C =11845.760562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.161 3.839 3 H 0.088 0.912 4 C -0.117 4.117 5 C -0.051 4.051 6 C 0.022 3.978 7 C -0.201 4.201 8 C -0.201 4.201 9 C -0.023 4.023 10 N -0.448 5.448 11 C 0.070 3.930 12 N -0.747 5.747 13 C 0.716 3.284 14 O -0.596 6.596 15 N -0.628 5.628 16 C 0.107 3.893 17 C -0.117 4.117 18 C 0.250 3.750 19 O -0.584 6.584 20 C -0.539 4.539 21 H 0.066 0.934 22 C 0.071 3.929 23 N -0.894 5.894 24 Si 0.905 3.095 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 C 0.112 3.888 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.158 0.842 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.389 0.611 43 H 0.054 0.946 44 H 0.047 0.953 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.386 0.614 48 H 0.272 0.728 49 H 0.056 0.944 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.163 -7.931 -19.715 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.055 3.945 3 H 0.106 0.894 4 C -0.155 4.155 5 C -0.089 4.089 6 C -0.089 4.089 7 C -0.225 4.225 8 C -0.226 4.226 9 C -0.152 4.152 10 N -0.124 5.124 11 C -0.072 4.072 12 N -0.403 5.403 13 C 0.419 3.581 14 O -0.475 6.475 15 N -0.365 5.365 16 C -0.016 4.016 17 C -0.155 4.155 18 C 0.209 3.791 19 O -0.395 6.395 20 C -0.577 4.577 21 H 0.084 0.916 22 C -0.132 4.132 23 N -0.533 5.533 24 Si 0.732 3.268 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.200 1.200 28 C -0.010 4.010 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.176 0.824 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.222 0.778 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.238 0.762 48 H 0.082 0.918 49 H 0.074 0.926 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.983 -7.640 -19.684 21.324 hybrid contribution 0.484 0.177 1.042 1.162 sum 3.467 -7.464 -18.642 20.377 Atomic orbital electron populations 1.22192 0.95620 1.01850 1.02525 1.20752 0.93706 0.97354 0.82687 0.89350 1.21887 0.94709 1.01107 0.97844 1.20137 0.95284 1.00418 0.93094 1.20402 1.06258 0.84965 0.97285 1.20684 1.09405 1.00098 0.92301 1.20856 1.08495 0.93908 0.99293 1.21752 1.09055 1.00916 0.83470 1.43948 1.49541 1.10768 1.08110 1.22018 1.03532 0.93209 0.88450 1.45245 1.72822 1.13187 1.09066 1.15538 0.78410 0.84634 0.79565 1.90879 1.57893 1.14480 1.84230 1.47904 1.67484 1.10808 1.10269 1.21886 0.97826 0.82954 0.98951 1.22594 1.00246 1.00520 0.92105 1.19611 0.81080 0.87472 0.90920 1.86051 1.25010 1.49680 1.78721 1.21453 1.11204 1.20146 1.04912 0.91575 1.25084 0.94906 0.94814 0.98428 1.69559 1.21751 1.24050 1.37936 0.86447 0.79815 0.78049 0.82498 1.20011 1.21052 1.20012 1.23183 1.00909 0.98830 0.78105 0.91994 0.92839 0.91669 0.89900 0.91806 0.91184 0.89566 0.84898 0.84979 0.82445 0.90881 0.89829 0.89907 0.77809 0.92778 0.93470 0.90851 0.90554 0.76159 0.91793 0.92559 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.48 37.16 0.35 -1.61 16 2 C 0.16 1.95 2.57 -67.93 -0.17 1.78 16 3 H 0.09 1.25 7.58 -51.93 -0.39 0.85 16 4 C -0.12 -1.08 4.74 -26.73 -0.13 -1.20 16 5 C -0.05 -0.50 5.19 -27.88 -0.14 -0.64 16 6 C 0.02 0.23 6.14 -81.79 -0.50 -0.27 16 7 C -0.20 -2.16 10.77 -39.78 -0.43 -2.58 16 8 C -0.20 -2.02 10.86 -39.78 -0.43 -2.45 16 9 C -0.02 -0.21 11.43 -16.75 -0.19 -0.40 16 10 N -0.45 -4.20 3.15 -119.90 -0.38 -4.58 16 11 C 0.07 0.45 10.70 59.85 0.64 1.09 16 12 N -0.75 -10.57 4.49 -58.68 -0.26 -10.83 16 13 C 0.72 14.11 8.45 -86.92 -0.73 13.37 16 14 O -0.60 -14.12 16.26 5.30 0.09 -14.04 16 15 N -0.63 -12.68 3.32 -176.10 -0.59 -13.26 16 16 C 0.11 1.79 6.15 -3.07 -0.02 1.77 16 17 C -0.12 -2.23 6.12 -24.90 -0.15 -2.39 16 18 C 0.25 5.96 0.89 -89.50 -0.08 5.88 16 19 O -0.58 -14.90 13.19 -35.23 -0.46 -15.37 16 20 C -0.54 -13.81 8.25 -34.44 -0.28 -14.09 16 21 H 0.07 1.65 7.77 -52.48 -0.41 1.24 16 22 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 23 N -0.89 -23.76 10.72 55.43 0.59 -23.16 16 24 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 C 0.11 2.67 5.64 -2.41 -0.01 2.66 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.70 7.08 -51.93 -0.37 0.34 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.50 7.52 -51.93 -0.39 0.11 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.39 4.58 7.59 -40.82 -0.31 4.28 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.08 1.37 8.02 -51.93 -0.42 0.95 16 47 H 0.39 10.27 6.93 45.56 0.32 10.59 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.06 1.38 8.04 -51.93 -0.42 0.96 16 50 H 0.08 2.19 7.64 -51.93 -0.40 1.80 16 LS Contribution 404.88 15.07 6.10 6.10 Total: -1.00 -31.30 404.88 -10.15 -41.46 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -7.84 Total: 15.87 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -2.39 Total: 2.66 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.63 Total: -51.84 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.38 Total: -29.41 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.30 -10.15 -41.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591968562.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.660 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds