Wall clock time and date at job start Tue Mar 31 2020 18:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46891 * 2 1 4 4 C 1.52995 * 109.47403 * 239.99772 * 2 1 3 5 5 C 1.53003 * 109.47382 * 174.99823 * 4 2 1 6 6 C 1.50696 * 109.47121 * 179.97438 * 5 4 2 7 7 C 1.34854 * 125.89121 * 85.32750 * 6 5 4 8 8 C 1.40890 * 107.41722 * 180.15763 * 7 6 5 9 9 C 1.34856 * 107.41764 * 359.55980 * 8 7 6 10 10 N 1.36337 * 108.21648 * 0.27154 * 9 8 7 11 11 C 1.46501 * 125.63461 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.46984 * 119.99676 * 2 1 3 13 13 C 1.34779 * 119.99818 * 274.99836 * 12 2 1 14 14 O 1.21580 * 120.00039 * 0.02562 * 13 12 2 15 15 N 1.34778 * 119.99499 * 179.97438 * 13 12 2 16 16 C 1.47017 * 125.65499 * 0.02702 * 15 13 12 17 17 C 1.54320 * 107.27755 * 181.01969 * 16 15 13 18 18 C 1.55161 * 102.93820 * 22.19693 * 17 16 15 19 19 O 1.42897 * 111.00709 * 82.57175 * 18 17 16 20 20 C 1.50696 * 111.00351 * 206.38546 * 18 17 16 21 21 H 1.08003 * 120.00292 * 359.97438 * 20 18 17 22 22 C 1.37878 * 120.00398 * 179.97438 * 20 18 17 23 23 N 1.31518 * 119.99674 * 0.02562 * 22 20 18 24 24 Si 1.86795 * 120.00287 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47273 * 60.00190 * 24 22 20 26 26 H 1.48505 * 109.47114 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47379 * 300.00114 * 24 22 20 28 28 C 1.47433 * 125.64521 * 179.72111 * 15 13 12 29 29 H 1.09001 * 109.47305 * 60.00597 * 1 2 3 30 30 H 1.09000 * 109.46891 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47399 * 300.00195 * 1 2 3 32 32 H 1.09003 * 109.47129 * 55.00018 * 4 2 1 33 33 H 1.09007 * 109.47152 * 295.00165 * 4 2 1 34 34 H 1.09003 * 109.46829 * 60.00011 * 5 4 2 35 35 H 1.08993 * 109.47124 * 300.00112 * 5 4 2 36 36 H 1.07999 * 126.28920 * 0.02562 * 7 6 5 37 37 H 1.08002 * 126.29400 * 179.83402 * 8 7 6 38 38 H 1.07996 * 125.89292 * 180.28042 * 9 8 7 39 39 H 1.08998 * 109.47589 * 90.02245 * 11 10 9 40 40 H 1.09001 * 109.46859 * 210.01941 * 11 10 9 41 41 H 1.08998 * 109.47009 * 330.02029 * 11 10 9 42 42 H 0.97001 * 120.00395 * 95.00461 * 12 2 1 43 43 H 1.09004 * 109.88476 * 300.44465 * 16 15 13 44 44 H 1.09000 * 109.88096 * 61.60349 * 16 15 13 45 45 H 1.09001 * 110.71965 * 140.55474 * 17 16 15 46 46 H 1.08991 * 110.72599 * 263.65519 * 17 16 15 47 47 H 0.96697 * 114.00457 * 180.02562 * 19 18 17 48 48 H 0.96994 * 120.00060 * 179.97438 * 23 22 20 49 49 H 1.09000 * 110.36158 * 274.74744 * 28 15 13 50 50 H 1.08995 * 110.36624 * 37.06849 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3136 6 6 4.0673 -1.3242 -2.5437 7 6 4.1577 -0.7955 -3.7809 8 6 4.6705 -1.7956 -4.6305 9 6 4.8831 -2.8944 -3.8782 10 7 4.5146 -2.6112 -2.5965 11 6 4.5869 -3.5368 -1.4632 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8574 1.1615 2.4117 15 7 2.5957 -0.6536 3.4577 16 6 2.9795 -2.0708 3.5324 17 6 3.4023 -2.3550 4.9891 18 6 2.6953 -1.2247 5.7829 19 8 1.3342 -1.5642 6.0552 20 6 3.4370 -0.9145 7.0575 21 1 4.3358 -1.4595 7.3056 22 6 2.9682 0.0651 7.9070 23 7 1.8734 0.7284 7.6051 24 14 3.8872 0.4491 9.4873 25 1 5.2686 0.8868 9.1627 26 1 3.1829 1.5330 10.2185 27 1 3.9402 -0.7674 10.3372 28 6 2.7891 -0.0410 4.7847 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6054 -0.2618 -2.1369 33 1 1.7517 -1.7716 -1.2055 34 1 3.9995 -1.0727 -0.4258 35 1 3.8532 0.4369 -1.3573 36 1 3.8850 0.2093 -4.0681 37 1 4.8627 -1.6986 -5.6889 38 1 5.2773 -3.8362 -4.2302 39 1 5.5589 -3.4431 -0.9789 40 1 3.8000 -3.2975 -0.7479 41 1 4.4555 -4.5584 -1.8196 42 1 2.2490 -1.6317 1.1528 43 1 2.1305 -2.6994 3.2634 44 1 3.8147 -2.2646 2.8594 45 1 3.0452 -3.3334 5.3104 46 1 4.4847 -2.2867 5.0968 47 1 0.8513 -0.8876 6.5493 48 1 1.5434 1.4173 8.2029 49 1 3.7692 0.4322 4.8448 50 1 2.0027 0.6867 4.9849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591968562.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:29 Heat of formation + Delta-G solvation = -56.755403 kcal Electronic energy + Delta-G solvation = -29672.894489 eV Core-core repulsion = 25699.812751 eV Total energy + Delta-G solvation = -3973.081738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.06782 -41.26651 -39.28686 -37.43074 -36.04213 -34.14392 -33.86181 -33.62708 -32.16085 -30.94612 -29.49364 -28.43197 -27.10936 -26.93118 -24.80968 -24.12993 -22.01333 -21.43916 -21.39356 -20.98322 -19.91989 -19.27509 -18.79728 -17.72531 -17.41211 -16.97273 -16.71792 -16.26419 -16.10847 -15.74212 -15.39418 -15.20816 -14.73558 -14.70884 -14.59576 -14.42350 -13.99809 -13.91443 -13.66806 -13.47852 -13.37385 -13.28524 -13.16560 -13.04052 -12.83365 -12.81271 -12.69030 -12.50045 -12.35058 -12.32102 -12.21680 -12.08351 -11.86630 -11.73792 -11.28809 -11.16864 -10.63482 -10.33029 -10.15104 -9.43646 -9.29212 -8.84454 -8.24939 -6.41934 1.38326 1.43699 1.44272 1.52533 1.73154 2.15639 2.18474 2.22205 2.38469 3.01171 3.13641 3.61950 3.82138 4.00977 4.04380 4.10046 4.14242 4.19498 4.26472 4.34727 4.36360 4.46647 4.48757 4.61434 4.64854 4.69135 4.74176 4.77812 4.78852 4.82414 4.85554 4.95415 5.06008 5.07387 5.11425 5.23196 5.32278 5.34332 5.42095 5.45656 5.46493 5.50557 5.66461 5.77792 6.04043 6.17716 6.23155 6.38550 6.58801 6.65354 7.13101 7.30859 7.40005 7.64548 8.80357 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018868 B = 0.002508 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.605236 B =11160.797989 C =11845.760562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.160 3.840 3 H 0.065 0.935 4 C -0.100 4.100 5 C -0.045 4.045 6 C 0.010 3.990 7 C -0.222 4.222 8 C -0.223 4.223 9 C -0.022 4.022 10 N -0.451 5.451 11 C 0.062 3.938 12 N -0.722 5.722 13 C 0.711 3.289 14 O -0.645 6.645 15 N -0.634 5.634 16 C 0.109 3.891 17 C -0.111 4.111 18 C 0.232 3.768 19 O -0.590 6.590 20 C -0.555 4.555 21 H 0.071 0.929 22 C 0.024 3.976 23 N -0.919 5.919 24 Si 0.965 3.035 25 H -0.270 1.270 26 H -0.287 1.287 27 H -0.268 1.268 28 C 0.126 3.874 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.134 0.866 37 H 0.142 0.858 38 H 0.184 0.816 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.406 0.594 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.376 0.624 48 H 0.270 0.730 49 H 0.041 0.959 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.230 -10.607 -21.073 23.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.055 3.945 3 H 0.084 0.916 4 C -0.138 4.138 5 C -0.084 4.084 6 C -0.102 4.102 7 C -0.247 4.247 8 C -0.248 4.248 9 C -0.152 4.152 10 N -0.126 5.126 11 C -0.079 4.079 12 N -0.379 5.379 13 C 0.413 3.587 14 O -0.527 6.527 15 N -0.370 5.370 16 C -0.013 4.013 17 C -0.149 4.149 18 C 0.192 3.808 19 O -0.399 6.399 20 C -0.594 4.594 21 H 0.089 0.911 22 C -0.177 4.177 23 N -0.559 5.559 24 Si 0.790 3.210 25 H -0.195 1.195 26 H -0.213 1.213 27 H -0.193 1.193 28 C 0.002 3.998 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.152 0.848 37 H 0.160 0.840 38 H 0.201 0.799 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.242 0.758 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.227 0.773 48 H 0.079 0.921 49 H 0.059 0.941 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.064 -10.392 -21.083 23.854 hybrid contribution 0.156 1.006 1.407 1.736 sum 4.220 -9.387 -19.676 22.205 Atomic orbital electron populations 1.22150 0.95209 1.02573 1.01820 1.20890 0.93979 0.96626 0.82987 0.91637 1.21748 0.94284 1.01566 0.96192 1.20047 0.95493 0.99848 0.92965 1.20431 1.06914 0.85735 0.97114 1.20917 1.10119 1.00594 0.93023 1.21128 1.09250 0.94304 1.00081 1.22222 1.08036 1.01624 0.83363 1.44184 1.48846 1.10706 1.08893 1.22263 1.04079 0.93692 0.87869 1.45055 1.71403 1.13750 1.07695 1.15767 0.78149 0.84226 0.80592 1.90844 1.59825 1.16921 1.85154 1.47835 1.67893 1.12182 1.09107 1.22089 1.00117 0.80732 0.98343 1.22595 1.00495 0.99109 0.92679 1.19880 0.80426 0.89567 0.90951 1.86040 1.26000 1.49347 1.78550 1.21823 1.11523 1.20177 1.05839 0.91084 1.25856 0.95636 0.94796 1.01379 1.69686 1.22983 1.24404 1.38779 0.85501 0.78655 0.77818 0.79020 1.19506 1.21263 1.19299 1.22706 0.98236 0.98188 0.80694 0.89673 0.91325 0.95427 0.88753 0.90220 0.91241 0.90566 0.84846 0.84045 0.79857 0.90444 0.89138 0.87885 0.75825 0.91013 0.89035 0.89738 0.89253 0.77302 0.92060 0.94118 0.94667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 9.48 71.98 0.68 -2.95 16 2 C 0.16 3.70 2.57 44.99 0.12 3.82 16 3 H 0.07 1.86 7.58 -2.39 -0.02 1.85 16 4 C -0.10 -1.59 4.74 30.59 0.14 -1.44 16 5 C -0.05 -0.80 5.19 29.85 0.15 -0.65 16 6 C 0.01 0.19 6.14 41.08 0.25 0.44 16 7 C -0.22 -4.54 10.77 22.14 0.24 -4.30 16 8 C -0.22 -4.15 10.86 22.14 0.24 -3.91 16 9 C -0.02 -0.36 11.43 83.22 0.95 0.59 16 10 N -0.45 -7.24 3.15 -533.25 -1.68 -8.92 16 11 C 0.06 0.58 10.70 127.77 1.37 1.95 16 12 N -0.72 -19.29 4.49 -457.83 -2.06 -21.35 16 13 C 0.71 28.01 8.45 179.05 1.51 29.53 16 14 O -0.64 -31.80 16.26 -3.97 -0.06 -31.86 16 15 N -0.63 -25.30 3.32 -829.32 -2.76 -28.05 16 16 C 0.11 3.31 6.15 86.73 0.53 3.84 16 17 C -0.11 -4.00 6.12 31.78 0.19 -3.81 16 18 C 0.23 11.11 0.89 -10.07 -0.01 11.10 16 19 O -0.59 -30.55 13.19 -148.98 -1.97 -32.51 16 20 C -0.56 -28.55 8.25 25.60 0.21 -28.34 16 21 H 0.07 3.49 7.77 -2.91 -0.02 3.47 16 22 C 0.02 1.24 5.30 84.65 0.45 1.69 16 23 N -0.92 -50.47 10.72 21.45 0.23 -50.24 16 24 Si 0.96 41.60 29.54 68.60 2.03 43.63 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 28 C 0.13 6.19 5.64 86.93 0.49 6.68 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.07 1.22 7.08 -2.39 -0.02 1.21 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 38 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.09 0.72 7.52 -2.39 -0.02 0.70 16 41 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.41 8.19 7.59 -92.71 -0.70 7.49 16 43 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 46 H 0.09 2.97 8.02 -2.39 -0.02 2.95 16 47 H 0.38 20.80 6.93 -74.06 -0.51 20.29 16 48 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 49 H 0.04 2.07 8.04 -2.39 -0.02 2.05 16 50 H 0.03 2.02 7.64 -2.39 -0.02 2.00 16 Total: -1.00 -71.38 404.88 0.98 -70.40 By element: Atomic # 1 Polarization: 44.93 SS G_CDS: -0.28 Total: 44.65 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 7.53 Total: 14.25 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -6.26 Total: -108.55 kcal Atomic # 8 Polarization: -62.34 SS G_CDS: -2.03 Total: -64.37 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -71.38 0.98 -70.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591968562.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.644 kcal (2) G-P(sol) polarization free energy of solvation -71.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds