Wall clock time and date at job start Tue Mar 31 2020 18:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52998 * 109.47705 * 174.99884 * 4 2 1 6 6 C 1.50697 * 109.47688 * 179.97438 * 5 4 2 7 7 C 1.34849 * 125.88944 * 84.69176 * 6 5 4 8 8 C 1.40888 * 107.41739 * 179.88769 * 7 6 5 9 9 C 1.34851 * 107.41870 * 0.38122 * 8 7 6 10 10 N 1.36336 * 125.89208 * 265.00498 * 6 5 4 11 11 C 1.46501 * 125.63701 * 359.94826 * 10 6 5 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21585 * 120.00132 * 359.97438 * 13 12 2 15 15 N 1.34775 * 120.00044 * 179.97438 * 13 12 2 16 16 C 1.47021 * 125.65267 * 359.68862 * 15 13 12 17 17 C 1.54327 * 107.26942 * 178.85152 * 16 15 13 18 18 C 1.55156 * 103.02068 * 338.14051 * 17 16 15 19 19 O 1.42898 * 111.00350 * 277.23340 * 18 17 16 20 20 C 1.50703 * 111.03770 * 153.39883 * 18 17 16 21 21 H 1.08001 * 120.00009 * 6.32800 * 20 18 17 22 22 C 1.37873 * 119.99771 * 186.33248 * 20 18 17 23 23 N 1.31514 * 120.00456 * 359.97438 * 22 20 18 24 24 Si 1.86809 * 119.99654 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46685 * 90.00229 * 24 22 20 26 26 H 1.48500 * 109.46707 * 209.99760 * 24 22 20 27 27 H 1.48495 * 109.47360 * 329.99927 * 24 22 20 28 28 C 1.47426 * 125.65033 * 179.97438 * 15 13 12 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 33 33 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 34 34 H 1.09001 * 109.46974 * 300.00556 * 5 4 2 35 35 H 1.09000 * 109.46929 * 59.99736 * 5 4 2 36 36 H 1.08001 * 126.29271 * 0.02562 * 7 6 5 37 37 H 1.07998 * 126.29384 * 180.12460 * 8 7 6 38 38 H 1.07994 * 125.89263 * 179.80865 * 9 8 7 39 39 H 1.09007 * 109.46697 * 90.00713 * 11 10 6 40 40 H 1.08994 * 109.47519 * 209.99672 * 11 10 6 41 41 H 1.08993 * 109.47222 * 330.00988 * 11 10 6 42 42 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 43 43 H 1.09001 * 109.88152 * 298.39816 * 16 15 13 44 44 H 1.09003 * 109.88062 * 59.56080 * 16 15 13 45 45 H 1.09007 * 110.84964 * 219.67048 * 17 16 15 46 46 H 1.09006 * 110.51796 * 96.45580 * 17 16 15 47 47 H 0.96697 * 113.99914 * 173.65489 * 19 18 17 48 48 H 0.96991 * 120.00227 * 180.02562 * 23 22 20 49 49 H 1.09005 * 110.36464 * 322.92664 * 28 15 13 50 50 H 1.09001 * 110.37035 * 85.13902 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5648 -0.6133 -1.3136 6 6 4.0673 -1.3243 -2.5437 7 6 4.1466 -0.7992 -3.7832 8 6 4.6699 -1.7958 -4.6306 9 6 4.8826 -2.8945 -3.8783 10 7 4.5146 -2.6111 -2.5964 11 6 4.5882 -3.5363 -1.4629 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1616 2.4117 15 7 2.5958 -0.6536 3.4577 16 6 2.9730 -2.0725 3.5340 17 6 3.4509 -2.3426 4.9764 18 6 3.8436 -0.9303 5.4848 19 8 5.1631 -0.5819 5.0611 20 6 3.7196 -0.8411 6.9840 21 1 3.4916 -1.7255 7.5605 22 6 3.8972 0.3694 7.6196 23 7 4.1752 1.4462 6.9177 24 14 3.7428 0.4800 9.4781 25 1 5.0698 0.2406 10.1000 26 1 3.2561 1.8315 9.8547 27 1 2.7798 -0.5441 9.9566 28 6 2.7841 -0.0424 4.7860 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2617 -2.1369 34 1 3.8532 0.4370 -1.3573 35 1 3.9995 -1.0727 -0.4259 36 1 3.8632 0.2019 -4.0728 37 1 4.8613 -1.6990 -5.6891 38 1 5.2770 -3.8362 -4.2303 39 1 3.6521 -4.0893 -1.3839 40 1 5.4107 -4.2347 -1.6168 41 1 4.7563 -2.9735 -0.5448 42 1 2.2490 -1.6317 1.1527 43 1 2.1106 -2.6983 3.3039 44 1 3.7814 -2.2794 2.8328 45 1 4.3143 -3.0080 4.9808 46 1 2.6404 -2.7569 5.5762 47 1 5.4164 0.3273 5.2711 48 1 4.3005 2.2977 7.3649 49 1 3.1519 0.9787 4.6851 50 1 1.8486 -0.0543 5.3453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591968563.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:33 Heat of formation + Delta-G solvation = -36.428598 kcal Electronic energy + Delta-G solvation = -29770.184195 eV Core-core repulsion = 25797.983893 eV Total energy + Delta-G solvation = -3972.200302 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.34512 -39.75977 -37.73205 -36.13665 -34.22363 -32.98772 -32.76840 -32.23038 -30.83544 -29.55613 -27.72214 -27.63448 -26.51828 -25.08575 -23.82164 -22.69898 -20.92524 -20.69663 -19.66319 -19.54979 -19.18975 -17.56714 -17.07074 -16.95746 -16.10682 -15.45886 -15.25318 -15.06390 -14.68267 -14.43130 -14.29159 -13.93873 -13.59744 -13.52735 -13.27320 -13.10607 -12.94863 -12.84047 -12.59824 -12.40941 -12.21949 -12.17061 -12.01612 -11.87234 -11.66797 -11.52874 -11.36098 -11.04230 -11.02356 -10.87021 -10.76456 -10.61889 -10.47340 -10.20253 -9.58233 -9.36777 -8.82809 -8.71630 -8.69683 -8.36046 -8.08709 -7.68663 -6.27395 -4.37355 2.12416 2.82044 2.93101 3.14075 3.21887 3.28610 3.30637 3.77184 4.25579 4.43740 4.50682 4.57859 4.80956 4.88107 4.96566 4.99017 5.00108 5.12649 5.20240 5.35413 5.38623 5.48698 5.52551 5.56819 5.58041 5.61890 5.72040 5.73692 5.78637 5.95069 5.98064 6.05107 6.17468 6.18693 6.26482 6.29152 6.48901 6.68770 6.84883 6.88093 6.93683 6.97837 7.13115 7.23807 7.25471 7.32802 7.66522 7.74527 8.03405 8.55569 8.67251 9.16654 9.29812 9.38000 10.79555 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018028 B = 0.002612 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.748422 B =10716.826437 C =11454.518610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.160 3.840 3 H 0.089 0.911 4 C -0.116 4.116 5 C -0.052 4.052 6 C 0.023 3.977 7 C -0.201 4.201 8 C -0.201 4.201 9 C -0.023 4.023 10 N -0.447 5.447 11 C 0.069 3.931 12 N -0.747 5.747 13 C 0.716 3.284 14 O -0.596 6.596 15 N -0.629 5.629 16 C 0.107 3.893 17 C -0.116 4.116 18 C 0.249 3.751 19 O -0.583 6.583 20 C -0.538 4.538 21 H 0.066 0.934 22 C 0.071 3.929 23 N -0.891 5.891 24 Si 0.903 3.097 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.273 1.273 28 C 0.114 3.886 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.158 0.842 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.389 0.611 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.381 0.619 48 H 0.270 0.730 49 H 0.085 0.915 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.174 -9.419 -18.339 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.055 3.945 3 H 0.107 0.893 4 C -0.154 4.154 5 C -0.090 4.090 6 C -0.088 4.088 7 C -0.226 4.226 8 C -0.225 4.225 9 C -0.152 4.152 10 N -0.123 5.123 11 C -0.073 4.073 12 N -0.403 5.403 13 C 0.418 3.582 14 O -0.474 6.474 15 N -0.366 5.366 16 C -0.017 4.017 17 C -0.154 4.154 18 C 0.208 3.792 19 O -0.392 6.392 20 C -0.577 4.577 21 H 0.084 0.916 22 C -0.132 4.132 23 N -0.529 5.529 24 Si 0.730 3.270 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.008 4.008 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.175 0.825 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.222 0.778 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.231 0.769 48 H 0.080 0.920 49 H 0.103 0.897 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.365 -9.158 -18.252 20.557 hybrid contribution 0.031 0.093 1.112 1.117 sum -2.334 -9.065 -17.139 19.529 Atomic orbital electron populations 1.22188 0.95705 1.01726 1.02478 1.20753 0.93583 0.97459 0.82752 0.89318 1.21869 0.94774 1.01041 0.97762 1.20145 0.95223 1.00475 0.93153 1.20398 1.06209 0.84995 0.97229 1.20676 1.09376 1.00244 0.92257 1.20849 1.08406 0.93966 0.99323 1.21748 1.09159 1.00823 0.83517 1.43945 1.49569 1.10710 1.08079 1.22030 1.03150 0.93428 0.88687 1.45246 1.72807 1.13231 1.09041 1.15536 0.78482 0.84603 0.79540 1.90883 1.57961 1.14319 1.84264 1.47942 1.67478 1.10830 1.10339 1.21892 0.97686 0.82661 0.99432 1.22588 1.00494 0.99305 0.93002 1.19621 0.80033 0.87866 0.91676 1.86091 1.33222 1.36008 1.83854 1.21442 1.49925 0.95115 0.91179 0.91597 1.25079 0.93520 0.95462 0.99165 1.69715 1.47295 0.99878 1.36053 0.86417 0.78484 0.77535 0.84542 1.20419 1.21007 1.19735 1.23108 0.99682 0.99812 0.78194 0.92905 0.91971 0.91783 0.91834 0.89954 0.89555 0.91095 0.84909 0.84995 0.82461 0.90965 0.89927 0.89625 0.77785 0.93292 0.92966 0.90872 0.90480 0.76903 0.91992 0.89665 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.48 37.16 0.35 -1.52 16 2 C 0.16 1.95 2.57 -67.94 -0.17 1.78 16 3 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 4 C -0.12 -1.09 4.73 -26.74 -0.13 -1.22 16 5 C -0.05 -0.54 5.37 -27.89 -0.15 -0.69 16 6 C 0.02 0.25 6.14 -81.79 -0.50 -0.25 16 7 C -0.20 -2.25 10.76 -39.78 -0.43 -2.68 16 8 C -0.20 -2.09 10.86 -39.78 -0.43 -2.53 16 9 C -0.02 -0.22 11.43 -16.75 -0.19 -0.41 16 10 N -0.45 -4.42 3.15 -119.90 -0.38 -4.80 16 11 C 0.07 0.48 10.91 59.85 0.65 1.14 16 12 N -0.75 -10.56 4.49 -58.68 -0.26 -10.82 16 13 C 0.72 14.08 8.45 -86.92 -0.73 13.35 16 14 O -0.60 -14.12 16.26 5.29 0.09 -14.03 16 15 N -0.63 -12.67 3.33 -176.25 -0.59 -13.25 16 16 C 0.11 1.77 6.15 -3.06 -0.02 1.76 16 17 C -0.12 -2.21 6.13 -24.90 -0.15 -2.37 16 18 C 0.25 5.89 0.87 -89.64 -0.08 5.81 16 19 O -0.58 -14.57 13.16 -35.23 -0.46 -15.04 16 20 C -0.54 -13.81 8.27 -34.44 -0.28 -14.09 16 21 H 0.07 1.66 7.79 -52.49 -0.41 1.25 16 22 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 23 N -0.89 -23.69 10.69 55.43 0.59 -23.10 16 24 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 C 0.11 2.72 5.38 -2.54 -0.01 2.71 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.77 6.53 -51.93 -0.34 0.43 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.62 6.94 -51.93 -0.36 0.26 16 42 H 0.39 4.59 7.59 -40.82 -0.31 4.28 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 1.33 8.14 -51.92 -0.42 0.90 16 46 H 0.08 1.40 8.03 -51.93 -0.42 0.98 16 47 H 0.38 9.87 7.56 45.56 0.34 10.21 16 48 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 49 H 0.08 2.31 7.33 -51.93 -0.38 1.93 16 50 H 0.06 1.39 8.03 -51.93 -0.42 0.98 16 LS Contribution 404.19 15.07 6.09 6.09 Total: -1.00 -31.23 404.19 -10.06 -41.29 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -7.74 Total: 15.91 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -2.38 Total: 2.54 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.63 Total: -51.97 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.38 Total: -29.07 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.23 -10.06 -41.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591968563.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.858 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds