Wall clock time and date at job start Tue Mar 31 2020 18:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52998 * 109.47705 * 174.99884 * 4 2 1 6 6 C 1.50697 * 109.47688 * 179.97438 * 5 4 2 7 7 C 1.34849 * 125.88944 * 84.69176 * 6 5 4 8 8 C 1.40888 * 107.41739 * 179.88769 * 7 6 5 9 9 C 1.34851 * 107.41870 * 0.38122 * 8 7 6 10 10 N 1.36336 * 125.89208 * 265.00498 * 6 5 4 11 11 C 1.46501 * 125.63701 * 359.94826 * 10 6 5 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21585 * 120.00132 * 359.97438 * 13 12 2 15 15 N 1.34775 * 120.00044 * 179.97438 * 13 12 2 16 16 C 1.47021 * 125.65267 * 359.68862 * 15 13 12 17 17 C 1.54327 * 107.26942 * 178.85152 * 16 15 13 18 18 C 1.55156 * 103.02068 * 338.14051 * 17 16 15 19 19 O 1.42898 * 111.00350 * 277.23340 * 18 17 16 20 20 C 1.50703 * 111.03770 * 153.39883 * 18 17 16 21 21 H 1.08001 * 120.00009 * 6.32800 * 20 18 17 22 22 C 1.37873 * 119.99771 * 186.33248 * 20 18 17 23 23 N 1.31514 * 120.00456 * 359.97438 * 22 20 18 24 24 Si 1.86809 * 119.99654 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46685 * 90.00229 * 24 22 20 26 26 H 1.48500 * 109.46707 * 209.99760 * 24 22 20 27 27 H 1.48495 * 109.47360 * 329.99927 * 24 22 20 28 28 C 1.47426 * 125.65033 * 179.97438 * 15 13 12 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 33 33 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 34 34 H 1.09001 * 109.46974 * 300.00556 * 5 4 2 35 35 H 1.09000 * 109.46929 * 59.99736 * 5 4 2 36 36 H 1.08001 * 126.29271 * 0.02562 * 7 6 5 37 37 H 1.07998 * 126.29384 * 180.12460 * 8 7 6 38 38 H 1.07994 * 125.89263 * 179.80865 * 9 8 7 39 39 H 1.09007 * 109.46697 * 90.00713 * 11 10 6 40 40 H 1.08994 * 109.47519 * 209.99672 * 11 10 6 41 41 H 1.08993 * 109.47222 * 330.00988 * 11 10 6 42 42 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 43 43 H 1.09001 * 109.88152 * 298.39816 * 16 15 13 44 44 H 1.09003 * 109.88062 * 59.56080 * 16 15 13 45 45 H 1.09007 * 110.84964 * 219.67048 * 17 16 15 46 46 H 1.09006 * 110.51796 * 96.45580 * 17 16 15 47 47 H 0.96697 * 113.99914 * 173.65489 * 19 18 17 48 48 H 0.96991 * 120.00227 * 180.02562 * 23 22 20 49 49 H 1.09005 * 110.36464 * 322.92664 * 28 15 13 50 50 H 1.09001 * 110.37035 * 85.13902 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5648 -0.6133 -1.3136 6 6 4.0673 -1.3243 -2.5437 7 6 4.1466 -0.7992 -3.7832 8 6 4.6699 -1.7958 -4.6306 9 6 4.8826 -2.8945 -3.8783 10 7 4.5146 -2.6111 -2.5964 11 6 4.5882 -3.5363 -1.4629 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1616 2.4117 15 7 2.5958 -0.6536 3.4577 16 6 2.9730 -2.0725 3.5340 17 6 3.4509 -2.3426 4.9764 18 6 3.8436 -0.9303 5.4848 19 8 5.1631 -0.5819 5.0611 20 6 3.7196 -0.8411 6.9840 21 1 3.4916 -1.7255 7.5605 22 6 3.8972 0.3694 7.6196 23 7 4.1752 1.4462 6.9177 24 14 3.7428 0.4800 9.4781 25 1 5.0698 0.2406 10.1000 26 1 3.2561 1.8315 9.8547 27 1 2.7798 -0.5441 9.9566 28 6 2.7841 -0.0424 4.7860 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2617 -2.1369 34 1 3.8532 0.4370 -1.3573 35 1 3.9995 -1.0727 -0.4259 36 1 3.8632 0.2019 -4.0728 37 1 4.8613 -1.6990 -5.6891 38 1 5.2770 -3.8362 -4.2303 39 1 3.6521 -4.0893 -1.3839 40 1 5.4107 -4.2347 -1.6168 41 1 4.7563 -2.9735 -0.5448 42 1 2.2490 -1.6317 1.1527 43 1 2.1106 -2.6983 3.3039 44 1 3.7814 -2.2794 2.8328 45 1 4.3143 -3.0080 4.9808 46 1 2.6404 -2.7569 5.5762 47 1 5.4164 0.3273 5.2711 48 1 4.3005 2.2977 7.3649 49 1 3.1519 0.9787 4.6851 50 1 1.8486 -0.0543 5.3453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591968563.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:32 Heat of formation + Delta-G solvation = -56.420479 kcal Electronic energy + Delta-G solvation = -29771.051108 eV Core-core repulsion = 25797.983893 eV Total energy + Delta-G solvation = -3973.067215 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.07333 -41.26738 -39.29880 -37.42411 -36.00631 -34.22018 -33.85947 -33.63397 -32.15029 -30.94526 -29.45398 -28.43012 -27.11801 -26.93379 -24.81472 -24.14143 -22.01168 -21.44278 -21.40998 -20.98066 -19.91564 -19.22609 -18.77927 -17.72929 -17.40160 -16.98158 -16.74485 -16.29617 -16.10706 -15.73551 -15.43441 -15.09902 -14.89548 -14.64197 -14.57333 -14.44278 -14.00562 -13.90843 -13.68623 -13.51345 -13.32224 -13.26463 -13.16080 -13.02542 -12.85493 -12.83749 -12.68082 -12.52379 -12.34066 -12.31535 -12.22634 -12.07254 -11.85495 -11.74145 -11.25691 -11.15216 -10.65460 -10.30322 -10.15329 -9.43998 -9.29424 -8.84838 -8.23525 -6.40733 1.38382 1.41816 1.44106 1.53559 1.73896 2.15149 2.17962 2.22441 2.38704 3.02570 3.14150 3.61825 3.81477 4.00615 4.04632 4.08250 4.10556 4.19747 4.26307 4.34320 4.36212 4.46050 4.48550 4.61625 4.64766 4.68689 4.75506 4.78812 4.79400 4.82263 4.85706 4.95184 5.06147 5.09039 5.13010 5.23059 5.32951 5.34359 5.41250 5.45324 5.48512 5.50221 5.66869 5.77362 6.07352 6.17555 6.24150 6.38185 6.58234 6.66864 7.13350 7.28756 7.36047 7.65175 8.81356 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018028 B = 0.002612 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.748422 B =10716.826437 C =11454.518610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.159 3.841 3 H 0.062 0.938 4 C -0.099 4.099 5 C -0.047 4.047 6 C 0.010 3.990 7 C -0.222 4.222 8 C -0.222 4.222 9 C -0.022 4.022 10 N -0.450 5.450 11 C 0.062 3.938 12 N -0.722 5.722 13 C 0.711 3.289 14 O -0.645 6.645 15 N -0.635 5.635 16 C 0.109 3.891 17 C -0.110 4.110 18 C 0.232 3.768 19 O -0.587 6.587 20 C -0.555 4.555 21 H 0.069 0.931 22 C 0.025 3.975 23 N -0.915 5.915 24 Si 0.962 3.038 25 H -0.275 1.275 26 H -0.287 1.287 27 H -0.264 1.264 28 C 0.129 3.871 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.029 0.971 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.185 0.815 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.406 0.594 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.372 0.628 48 H 0.268 0.732 49 H 0.041 0.959 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.564 -12.526 -19.432 23.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.080 0.920 4 C -0.137 4.137 5 C -0.085 4.085 6 C -0.102 4.102 7 C -0.246 4.246 8 C -0.247 4.247 9 C -0.152 4.152 10 N -0.126 5.126 11 C -0.079 4.079 12 N -0.379 5.379 13 C 0.413 3.587 14 O -0.527 6.527 15 N -0.371 5.371 16 C -0.013 4.013 17 C -0.148 4.148 18 C 0.192 3.808 19 O -0.394 6.394 20 C -0.593 4.593 21 H 0.087 0.913 22 C -0.176 4.176 23 N -0.554 5.554 24 Si 0.788 3.212 25 H -0.200 1.200 26 H -0.213 1.213 27 H -0.189 1.189 28 C 0.005 3.995 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.152 0.848 37 H 0.161 0.839 38 H 0.202 0.798 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.242 0.758 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.220 0.780 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.755 -12.345 -19.380 23.143 hybrid contribution 0.172 1.058 1.397 1.761 sum -2.583 -11.287 -17.983 21.388 Atomic orbital electron populations 1.22132 0.94741 1.02727 1.01913 1.20895 0.94284 0.96459 0.82959 0.92003 1.21736 0.93977 1.01661 0.96302 1.20052 0.95812 0.99684 0.92925 1.20415 1.06980 0.85814 0.97041 1.20909 1.10044 1.00754 0.92931 1.21125 1.09099 0.94303 1.00146 1.22229 1.08105 1.01567 0.83341 1.44179 1.48905 1.10633 1.08892 1.22258 1.04779 0.93257 0.87597 1.45054 1.71407 1.13785 1.07657 1.15761 0.78222 0.84175 0.80568 1.90848 1.59942 1.16759 1.85181 1.47867 1.67794 1.12260 1.09212 1.22094 1.00061 0.80777 0.98391 1.22587 1.01353 0.96413 0.94466 1.19854 0.79176 0.90659 0.91117 1.86082 1.34138 1.35285 1.83895 1.21802 1.49696 0.95228 0.92577 0.91294 1.25834 0.93373 0.95280 1.03111 1.69847 1.48060 1.00137 1.37386 0.85485 0.78540 0.77325 0.79860 1.20043 1.21336 1.18870 1.22606 0.98580 0.97991 0.80301 0.91033 0.89798 0.95124 0.90062 0.88714 0.90852 0.91577 0.84834 0.83947 0.79796 0.89342 0.88258 0.89935 0.75811 0.89270 0.90760 0.89574 0.89468 0.77974 0.92275 0.94016 0.94609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 9.48 71.98 0.68 -2.68 16 2 C 0.16 3.69 2.57 44.99 0.12 3.81 16 3 H 0.06 1.81 7.58 -2.39 -0.02 1.79 16 4 C -0.10 -1.63 4.73 30.59 0.14 -1.48 16 5 C -0.05 -0.90 5.37 29.85 0.16 -0.74 16 6 C 0.01 0.19 6.14 41.08 0.25 0.45 16 7 C -0.22 -4.77 10.76 22.14 0.24 -4.53 16 8 C -0.22 -4.32 10.86 22.14 0.24 -4.08 16 9 C -0.02 -0.38 11.43 83.21 0.95 0.57 16 10 N -0.45 -7.80 3.15 -533.27 -1.68 -9.48 16 11 C 0.06 0.67 10.91 127.77 1.39 2.06 16 12 N -0.72 -19.34 4.49 -457.84 -2.06 -21.40 16 13 C 0.71 28.04 8.45 179.06 1.51 29.55 16 14 O -0.64 -31.86 16.26 -3.98 -0.06 -31.93 16 15 N -0.63 -25.33 3.33 -829.79 -2.76 -28.09 16 16 C 0.11 3.29 6.15 86.73 0.53 3.82 16 17 C -0.11 -3.98 6.13 31.78 0.19 -3.78 16 18 C 0.23 11.04 0.87 -10.16 -0.01 11.03 16 19 O -0.59 -29.69 13.16 -148.98 -1.96 -31.65 16 20 C -0.55 -28.59 8.27 25.60 0.21 -28.38 16 21 H 0.07 3.42 7.79 -2.91 -0.02 3.40 16 22 C 0.02 1.31 5.29 84.65 0.45 1.75 16 23 N -0.92 -50.36 10.69 21.45 0.23 -50.13 16 24 Si 0.96 41.80 29.54 68.60 2.03 43.83 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 28 C 0.13 6.36 5.38 86.85 0.47 6.83 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.33 6.53 -2.39 -0.02 1.32 16 36 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.18 1.93 8.06 -2.91 -0.02 1.90 16 39 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.08 0.95 6.94 -2.39 -0.02 0.94 16 42 H 0.41 8.25 7.59 -92.70 -0.70 7.54 16 43 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 46 H 0.09 2.94 8.03 -2.38 -0.02 2.92 16 47 H 0.37 20.01 7.56 -74.06 -0.56 19.45 16 48 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 49 H 0.04 2.39 7.33 -2.38 -0.02 2.37 16 50 H 0.04 1.86 8.03 -2.39 -0.02 1.84 16 Total: -1.00 -71.12 404.19 0.95 -70.17 By element: Atomic # 1 Polarization: 44.79 SS G_CDS: -0.33 Total: 44.46 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 7.54 Total: 14.20 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -6.26 Total: -109.09 kcal Atomic # 8 Polarization: -61.55 SS G_CDS: -2.03 Total: -63.58 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -71.12 0.95 -70.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591968563.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.753 kcal (2) G-P(sol) polarization free energy of solvation -71.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds