Wall clock time and date at job start Tue Mar 31 2020 19:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46890 * 2 1 4 4 C 1.50699 * 109.47261 * 239.99675 * 2 1 3 5 5 H 1.07996 * 120.00063 * 239.99800 * 4 2 1 6 6 C 1.37881 * 119.99979 * 60.00290 * 4 2 1 7 7 N 1.31520 * 120.00003 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46934 * 59.99718 * 8 6 4 10 10 H 1.48498 * 109.47317 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47121 * 299.99681 * 8 6 4 12 12 C 1.50703 * 109.47014 * 119.99753 * 2 1 3 13 13 O 1.21279 * 120.00024 * 119.99915 * 12 2 1 14 14 N 1.34778 * 119.99935 * 300.00266 * 12 2 1 15 15 C 1.46499 * 119.99771 * 180.02562 * 14 12 2 16 16 H 1.09002 * 109.47391 * 34.99730 * 15 14 12 17 17 C 1.53002 * 109.46799 * 274.99826 * 15 14 12 18 18 C 1.53006 * 109.46711 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47445 * 59.99695 * 18 17 15 20 20 C 1.53002 * 109.47092 * 300.00075 * 19 18 17 21 21 C 1.53000 * 109.46840 * 155.00060 * 15 14 12 22 22 H 1.08992 * 109.47399 * 59.99666 * 21 15 14 23 23 N 1.46500 * 109.47023 * 299.99603 * 21 15 14 24 24 C 1.34777 * 120.00075 * 155.00453 * 23 21 15 25 25 O 1.21279 * 119.99824 * 359.97438 * 24 23 21 26 26 C 1.50699 * 120.00179 * 180.02562 * 24 23 21 27 27 H 1.08999 * 109.47169 * 59.99957 * 26 24 23 28 28 C 1.53004 * 109.46887 * 299.99789 * 26 24 23 29 29 C 1.52999 * 109.47204 * 179.97438 * 26 24 23 30 30 C 1.47203 * 109.47275 * 184.99658 * 29 26 24 31 31 N 8.98902 * 112.74046 * 35.57252 * 2 1 3 32 32 H 1.09000 * 109.46953 * 60.00300 * 1 2 3 33 33 H 1.09005 * 109.46885 * 180.02562 * 1 2 3 34 34 H 1.08991 * 109.47341 * 299.99999 * 1 2 3 35 35 H 0.96998 * 119.99845 * 180.02562 * 7 6 4 36 36 H 0.96998 * 119.99599 * 359.97438 * 14 12 2 37 37 H 1.09002 * 109.47075 * 299.99543 * 17 15 14 38 38 H 1.08996 * 109.47407 * 60.00500 * 17 15 14 39 39 H 1.09001 * 109.46726 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.46589 * 299.99365 * 18 17 15 41 41 H 1.09002 * 109.47045 * 59.99942 * 19 18 17 42 42 H 1.09000 * 109.47140 * 179.97438 * 19 18 17 43 43 H 1.09000 * 109.46497 * 180.02562 * 20 19 18 44 44 H 1.09002 * 109.47067 * 299.99853 * 20 19 18 45 45 H 0.97006 * 120.00223 * 335.00118 * 23 21 15 46 46 H 1.08994 * 109.46977 * 60.00018 * 28 26 24 47 47 H 1.09001 * 109.46871 * 179.97438 * 28 26 24 48 48 H 1.08999 * 109.47353 * 300.00055 * 28 26 24 49 49 H 1.08994 * 109.47464 * 305.00532 * 29 26 24 50 50 H 1.09003 * 109.46848 * 65.00223 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6035 8 14 2.3226 -1.1197 -4.0079 9 1 1.8282 -2.5199 -4.0080 10 1 1.8271 -0.4201 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.1955 -0.9401 3.6508 16 1 3.1948 -1.3319 3.4614 17 6 1.2519 -2.0944 3.9948 18 6 1.7620 -2.8149 5.2445 19 6 1.8129 -1.8313 6.4153 20 6 2.7564 -0.6771 6.0712 21 6 2.2466 0.0432 4.8218 22 1 1.2473 0.4350 5.0112 23 7 3.1501 1.1484 4.4924 24 6 2.9949 2.3466 5.0896 25 8 2.1070 2.5100 5.8994 26 6 3.9239 3.4836 4.7502 27 1 3.8498 3.7082 3.6862 28 6 5.3620 3.0855 5.0886 29 6 3.5327 4.7210 5.5605 30 6 4.3616 5.8635 5.1427 31 7 5.0048 6.7431 4.8227 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8899 35 1 0.7083 1.1607 -3.4845 36 1 1.1493 0.5390 2.5435 37 1 0.2525 -1.7025 4.1843 38 1 1.2154 -2.7949 3.1606 39 1 1.0896 -3.6369 5.4899 40 1 2.7615 -3.2067 5.0553 41 1 0.8134 -1.4395 6.6044 42 1 2.1759 -2.3447 7.3057 43 1 2.7929 0.0233 6.9056 44 1 3.7559 -1.0689 5.8821 45 1 3.8601 1.0178 3.8444 46 1 5.6404 2.2041 4.5110 47 1 6.0340 3.9077 4.8427 48 1 5.4361 2.8609 6.1526 49 1 2.4817 4.9518 5.3868 50 1 3.6913 4.5258 6.6211 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597839853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:25 Heat of formation + Delta-G solvation = -82.094596 kcal Electronic energy + Delta-G solvation = -29815.314642 eV Core-core repulsion = 25841.134114 eV Total energy + Delta-G solvation = -3974.180528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.65114 -39.30267 -37.84211 -37.06947 -34.62217 -34.31894 -33.77022 -33.57147 -30.71668 -29.96254 -28.79637 -28.10034 -25.15949 -24.58780 -23.33318 -22.39028 -21.62577 -20.57303 -19.85083 -19.23663 -18.18107 -17.26852 -16.36558 -16.31766 -15.92481 -15.86822 -15.51808 -14.87746 -14.65139 -14.51913 -14.29620 -14.08101 -13.95717 -13.72209 -13.50340 -13.19074 -12.96274 -12.83678 -12.71000 -12.64580 -12.49479 -12.41013 -12.29524 -11.56608 -11.50077 -11.43123 -11.39825 -11.30519 -11.05043 -11.02155 -10.83618 -10.73598 -10.70299 -10.38635 -10.27551 -9.98363 -9.94374 -9.25814 -9.01447 -8.63191 -8.52653 -8.34079 -6.05601 -4.09090 2.39260 2.40653 2.54079 2.93788 3.33857 3.37014 3.41608 3.65429 3.71834 3.78193 4.26061 4.43479 4.44501 4.49641 4.58133 4.79480 4.83884 4.91791 4.95943 5.13734 5.20214 5.26871 5.27853 5.28680 5.34357 5.36987 5.37518 5.56227 5.63810 5.72643 5.76575 5.86939 5.90563 5.96237 6.03125 6.17800 6.26752 6.32773 6.40621 6.59391 6.79647 6.89769 7.02653 7.28176 7.29851 7.44199 7.73020 7.95518 7.98981 8.11459 8.40230 8.99505 9.18807 9.56770 11.01765 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008620 B = 0.003546 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.320131 B = 7895.216269 C =10343.766261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.050 0.950 4 C -0.502 4.502 5 H 0.073 0.927 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.521 3.479 13 O -0.545 6.545 14 N -0.743 5.743 15 C 0.140 3.860 16 H 0.088 0.912 17 C -0.127 4.127 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.124 4.124 21 C 0.140 3.860 22 H 0.094 0.906 23 N -0.718 5.718 24 C 0.526 3.474 25 O -0.540 6.540 26 C -0.110 4.110 27 H 0.111 0.889 28 C -0.149 4.149 29 C -0.008 4.008 30 C 0.208 3.792 31 N -0.436 5.436 32 H 0.092 0.908 33 H 0.030 0.970 34 H 0.011 0.989 35 H 0.261 0.739 36 H 0.396 0.604 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.405 0.595 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.120 0.880 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.614 0.956 20.128 20.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.068 0.932 4 C -0.541 4.541 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.311 3.689 13 O -0.420 6.420 14 N -0.396 5.396 15 C 0.034 3.966 16 H 0.106 0.894 17 C -0.166 4.166 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.163 4.163 21 C 0.035 3.965 22 H 0.112 0.888 23 N -0.368 5.368 24 C 0.311 3.689 25 O -0.417 6.417 26 C -0.133 4.133 27 H 0.129 0.871 28 C -0.207 4.207 29 C -0.049 4.049 30 C -0.110 4.110 31 N -0.112 5.112 32 H 0.111 0.889 33 H 0.050 0.950 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.230 0.770 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.240 0.760 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.138 0.862 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.377 1.790 19.967 20.330 hybrid contribution 0.061 -0.454 -1.073 1.167 sum 3.439 1.336 18.894 19.251 Atomic orbital electron populations 1.21737 0.96586 0.99769 1.00901 1.18852 0.94101 0.96728 0.89387 0.93185 1.21095 1.31105 1.12844 0.89024 0.90879 1.24944 0.95093 0.95038 0.99091 1.69859 1.36967 1.23057 1.23653 0.86527 0.79263 0.79740 0.81726 1.20218 1.21390 1.20217 1.21977 0.78242 0.84231 0.84425 1.90532 1.38011 1.26768 1.86719 1.46369 1.55496 1.32493 1.05252 1.21047 0.99435 0.91850 0.84279 0.89433 1.21905 0.98951 0.97537 0.98195 1.21544 1.01757 0.97929 0.94456 1.21518 0.99889 0.95960 0.98121 1.21866 0.99659 0.97579 0.97235 1.21287 0.94771 0.86212 0.94194 0.88840 1.46025 1.35037 1.10923 1.44821 1.20255 0.84580 0.83343 0.80695 1.90719 1.33990 1.82947 1.34026 1.21263 0.96245 0.92876 1.02900 0.87110 1.21862 0.93358 1.02640 1.02814 1.19082 0.98395 0.85701 1.01689 1.29111 0.93820 0.94456 0.93565 1.81248 1.10026 1.11318 1.08654 0.88904 0.95045 0.96975 0.92903 0.77049 0.91672 0.90597 0.91686 0.91707 0.91652 0.91694 0.91087 0.91541 0.76025 0.91228 0.91459 0.91428 0.86243 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.87 37.16 0.33 -2.59 16 2 C 0.03 0.72 2.64 -92.92 -0.25 0.47 16 3 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 4 C -0.50 -13.76 8.37 -34.44 -0.29 -14.05 16 5 H 0.07 2.11 6.75 -52.49 -0.35 1.76 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -24.62 11.32 55.43 0.63 -23.99 16 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.52 10.78 7.11 -10.98 -0.08 10.70 16 13 O -0.54 -13.00 15.12 5.56 0.08 -12.92 16 14 N -0.74 -11.21 4.80 -53.80 -0.26 -11.47 16 15 C 0.14 1.73 1.98 -67.93 -0.13 1.60 16 16 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16 17 C -0.13 -1.52 5.50 -26.73 -0.15 -1.66 16 18 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 19 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 20 C -0.12 -1.08 5.49 -26.75 -0.15 -1.22 16 21 C 0.14 1.39 1.97 -67.95 -0.13 1.26 16 22 H 0.09 1.04 7.58 -51.93 -0.39 0.64 16 23 N -0.72 -6.43 4.80 -53.83 -0.26 -6.69 16 24 C 0.53 4.75 7.12 -10.99 -0.08 4.67 16 25 O -0.54 -6.34 15.58 5.56 0.09 -6.25 16 26 C -0.11 -0.74 2.70 -91.77 -0.25 -0.99 16 27 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 28 C -0.15 -0.88 8.90 37.16 0.33 -0.55 16 29 C -0.01 -0.05 4.54 -29.52 -0.13 -0.19 16 30 C 0.21 1.86 14.40 -20.77 -0.30 1.56 16 31 N -0.44 -5.30 18.54 42.14 0.78 -4.52 16 32 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 35 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.40 5.48 8.02 -40.82 -0.33 5.15 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.40 3.42 8.02 -40.82 -0.33 3.09 16 46 H 0.07 0.38 7.56 -51.93 -0.39 -0.01 16 47 H 0.07 0.43 7.38 -51.93 -0.38 0.05 16 48 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.12 0.71 7.95 -51.93 -0.41 0.30 16 50 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 406.39 15.07 6.12 6.12 Total: -1.00 -32.51 406.39 -7.84 -40.36 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -8.32 Total: 4.84 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.68 Total: -1.87 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.89 Total: -46.67 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.17 Total: -19.17 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.51 -7.84 -40.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597839853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.737 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds