Wall clock time and date at job start Tue Mar 31 2020 19:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46890 * 2 1 4 4 C 1.50699 * 109.47261 * 239.99675 * 2 1 3 5 5 H 1.07996 * 120.00063 * 239.99800 * 4 2 1 6 6 C 1.37881 * 119.99979 * 60.00290 * 4 2 1 7 7 N 1.31520 * 120.00003 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46934 * 59.99718 * 8 6 4 10 10 H 1.48498 * 109.47317 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47121 * 299.99681 * 8 6 4 12 12 C 1.50703 * 109.47014 * 119.99753 * 2 1 3 13 13 O 1.21279 * 120.00024 * 119.99915 * 12 2 1 14 14 N 1.34778 * 119.99935 * 300.00266 * 12 2 1 15 15 C 1.46499 * 119.99771 * 180.02562 * 14 12 2 16 16 H 1.09002 * 109.47391 * 34.99730 * 15 14 12 17 17 C 1.53002 * 109.46799 * 274.99826 * 15 14 12 18 18 C 1.53006 * 109.46711 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47445 * 59.99695 * 18 17 15 20 20 C 1.53002 * 109.47092 * 300.00075 * 19 18 17 21 21 C 1.53000 * 109.46840 * 155.00060 * 15 14 12 22 22 H 1.08992 * 109.47399 * 59.99666 * 21 15 14 23 23 N 1.46500 * 109.47023 * 299.99603 * 21 15 14 24 24 C 1.34777 * 120.00075 * 155.00453 * 23 21 15 25 25 O 1.21279 * 119.99824 * 359.97438 * 24 23 21 26 26 C 1.50699 * 120.00179 * 180.02562 * 24 23 21 27 27 H 1.08999 * 109.47169 * 59.99957 * 26 24 23 28 28 C 1.53004 * 109.46887 * 299.99789 * 26 24 23 29 29 C 1.52999 * 109.47204 * 179.97438 * 26 24 23 30 30 C 1.47203 * 109.47275 * 184.99658 * 29 26 24 31 31 N 8.98902 * 112.74046 * 35.57252 * 2 1 3 32 32 H 1.09000 * 109.46953 * 60.00300 * 1 2 3 33 33 H 1.09005 * 109.46885 * 180.02562 * 1 2 3 34 34 H 1.08991 * 109.47341 * 299.99999 * 1 2 3 35 35 H 0.96998 * 119.99845 * 180.02562 * 7 6 4 36 36 H 0.96998 * 119.99599 * 359.97438 * 14 12 2 37 37 H 1.09002 * 109.47075 * 299.99543 * 17 15 14 38 38 H 1.08996 * 109.47407 * 60.00500 * 17 15 14 39 39 H 1.09001 * 109.46726 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.46589 * 299.99365 * 18 17 15 41 41 H 1.09002 * 109.47045 * 59.99942 * 19 18 17 42 42 H 1.09000 * 109.47140 * 179.97438 * 19 18 17 43 43 H 1.09000 * 109.46497 * 180.02562 * 20 19 18 44 44 H 1.09002 * 109.47067 * 299.99853 * 20 19 18 45 45 H 0.97006 * 120.00223 * 335.00118 * 23 21 15 46 46 H 1.08994 * 109.46977 * 60.00018 * 28 26 24 47 47 H 1.09001 * 109.46871 * 179.97438 * 28 26 24 48 48 H 1.08999 * 109.47353 * 300.00055 * 28 26 24 49 49 H 1.08994 * 109.47464 * 305.00532 * 29 26 24 50 50 H 1.09003 * 109.46848 * 65.00223 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6035 8 14 2.3226 -1.1197 -4.0079 9 1 1.8282 -2.5199 -4.0080 10 1 1.8271 -0.4201 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.1955 -0.9401 3.6508 16 1 3.1948 -1.3319 3.4614 17 6 1.2519 -2.0944 3.9948 18 6 1.7620 -2.8149 5.2445 19 6 1.8129 -1.8313 6.4153 20 6 2.7564 -0.6771 6.0712 21 6 2.2466 0.0432 4.8218 22 1 1.2473 0.4350 5.0112 23 7 3.1501 1.1484 4.4924 24 6 2.9949 2.3466 5.0896 25 8 2.1070 2.5100 5.8994 26 6 3.9239 3.4836 4.7502 27 1 3.8498 3.7082 3.6862 28 6 5.3620 3.0855 5.0886 29 6 3.5327 4.7210 5.5605 30 6 4.3616 5.8635 5.1427 31 7 5.0048 6.7431 4.8227 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8899 35 1 0.7083 1.1607 -3.4845 36 1 1.1493 0.5390 2.5435 37 1 0.2525 -1.7025 4.1843 38 1 1.2154 -2.7949 3.1606 39 1 1.0896 -3.6369 5.4899 40 1 2.7615 -3.2067 5.0553 41 1 0.8134 -1.4395 6.6044 42 1 2.1759 -2.3447 7.3057 43 1 2.7929 0.0233 6.9056 44 1 3.7559 -1.0689 5.8821 45 1 3.8601 1.0178 3.8444 46 1 5.6404 2.2041 4.5110 47 1 6.0340 3.9077 4.8427 48 1 5.4361 2.8609 6.1526 49 1 2.4817 4.9518 5.3868 50 1 3.6913 4.5258 6.6211 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597839853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:24 Heat of formation + Delta-G solvation = -102.907693 kcal Electronic energy + Delta-G solvation = -29816.217166 eV Core-core repulsion = 25841.134114 eV Total energy + Delta-G solvation = -3975.083052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.54266 -40.52018 -39.00219 -37.86399 -35.73337 -35.35217 -35.10236 -34.84649 -32.53414 -30.82466 -29.80170 -28.75931 -27.17133 -25.29427 -24.74534 -23.36944 -22.73871 -21.47644 -20.76081 -20.58316 -18.82329 -18.46743 -18.09607 -17.31945 -17.09844 -16.90818 -16.50927 -16.32191 -15.79941 -15.55167 -15.40600 -15.06754 -14.87504 -14.76537 -14.50941 -14.26944 -14.18901 -13.94134 -13.72943 -13.53250 -13.48046 -13.30538 -13.16706 -12.95153 -12.94413 -12.68883 -12.59245 -12.28928 -12.20347 -12.12629 -12.03559 -11.99943 -11.97327 -11.84856 -11.55075 -11.24936 -11.01664 -10.72906 -10.57404 -10.28323 -10.00046 -9.84831 -8.13080 -6.22984 1.42442 1.43054 1.51512 1.67170 1.68760 1.83009 1.99263 2.19988 2.35710 2.53716 3.07539 3.17005 3.55356 3.67823 3.90353 3.97062 4.00499 4.05758 4.14910 4.27937 4.30444 4.34752 4.49090 4.52077 4.58048 4.74859 4.77636 4.80223 4.86650 4.89234 4.91833 4.96877 5.02968 5.07047 5.08902 5.18469 5.19923 5.28148 5.29170 5.38778 5.49391 5.52924 5.57037 5.68820 5.78220 5.96905 6.24677 6.54917 6.59772 6.76702 6.89632 7.25517 7.43133 7.60657 8.92110 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008620 B = 0.003546 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.320131 B = 7895.216269 C =10343.766261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.025 3.975 3 H 0.041 0.959 4 C -0.527 4.527 5 H 0.050 0.950 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.951 3.049 9 H -0.277 1.277 10 H -0.278 1.278 11 H -0.276 1.276 12 C 0.528 3.472 13 O -0.582 6.582 14 N -0.720 5.720 15 C 0.142 3.858 16 H 0.075 0.925 17 C -0.125 4.125 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.118 4.118 21 C 0.150 3.850 22 H 0.089 0.911 23 N -0.717 5.717 24 C 0.531 3.469 25 O -0.563 6.563 26 C -0.104 4.104 27 H 0.113 0.887 28 C -0.147 4.147 29 C -0.004 4.004 30 C 0.238 3.762 31 N -0.494 5.494 32 H 0.068 0.932 33 H 0.021 0.979 34 H 0.049 0.951 35 H 0.263 0.737 36 H 0.405 0.595 37 H 0.072 0.928 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.408 0.592 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.076 0.924 49 H 0.128 0.872 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 0.846 21.919 22.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.003 3.997 3 H 0.059 0.941 4 C -0.565 4.565 5 H 0.068 0.932 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.777 3.223 9 H -0.203 1.203 10 H -0.203 1.203 11 H -0.201 1.201 12 C 0.317 3.683 13 O -0.461 6.461 14 N -0.372 5.372 15 C 0.037 3.963 16 H 0.093 0.907 17 C -0.164 4.164 18 C -0.151 4.151 19 C -0.150 4.150 20 C -0.157 4.157 21 C 0.045 3.955 22 H 0.107 0.893 23 N -0.367 5.367 24 C 0.318 3.682 25 O -0.442 6.442 26 C -0.127 4.127 27 H 0.131 0.869 28 C -0.204 4.204 29 C -0.044 4.044 30 C -0.078 4.078 31 N -0.172 5.172 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.241 0.759 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.244 0.756 46 H 0.092 0.908 47 H 0.081 0.919 48 H 0.095 0.905 49 H 0.146 0.854 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.161 1.704 21.790 22.084 hybrid contribution 0.090 -0.441 -1.593 1.655 sum 3.251 1.262 20.198 20.497 Atomic orbital electron populations 1.21547 0.95472 0.99231 1.01492 1.18778 0.94984 0.95972 0.89917 0.94148 1.21276 1.31443 1.12678 0.91120 0.93217 1.25557 0.95254 0.95709 1.01330 1.69943 1.37238 1.23624 1.24214 0.85720 0.78733 0.78742 0.79104 1.20278 1.20267 1.20100 1.21358 0.78026 0.83577 0.85361 1.90516 1.39846 1.28322 1.87408 1.46054 1.54326 1.32259 1.04588 1.21197 0.98738 0.92617 0.83723 0.90715 1.21863 0.99399 0.96765 0.98390 1.21508 1.01693 0.98326 0.93589 1.21498 1.00057 0.95417 0.97998 1.21826 1.00017 0.97638 0.96227 1.21142 0.95004 0.85896 0.93448 0.89273 1.46030 1.34890 1.10870 1.44926 1.20494 0.84313 0.83433 0.80003 1.90715 1.35084 1.83294 1.35125 1.21222 0.96235 0.92110 1.03133 0.86859 1.21857 0.92435 1.02605 1.03534 1.19236 0.98202 0.84340 1.02589 1.29480 0.92609 0.93890 0.91863 1.81279 1.12026 1.13245 1.10688 0.91361 0.96008 0.93222 0.92747 0.75915 0.90909 0.93881 0.90649 0.91960 0.91336 0.89909 0.90774 0.90996 0.75621 0.90840 0.91949 0.90482 0.85376 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.87 71.98 0.64 -4.62 16 2 C 0.02 1.18 2.64 -12.28 -0.03 1.14 16 3 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 4 C -0.53 -29.50 8.37 25.60 0.21 -29.29 16 5 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 6 C 0.02 1.13 5.30 84.65 0.45 1.58 16 7 N -0.91 -50.26 11.32 21.45 0.24 -50.02 16 8 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 9 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 C 0.53 21.99 7.11 87.66 0.62 22.62 16 13 O -0.58 -28.44 15.12 -3.03 -0.05 -28.49 16 14 N -0.72 -21.18 4.80 -442.53 -2.12 -23.31 16 15 C 0.14 3.38 1.98 44.99 0.09 3.47 16 16 H 0.07 2.04 7.58 -2.39 -0.02 2.02 16 17 C -0.12 -2.88 5.50 30.60 0.17 -2.71 16 18 C -0.11 -1.92 5.92 30.60 0.18 -1.74 16 19 C -0.11 -1.50 5.92 30.59 0.18 -1.32 16 20 C -0.12 -1.72 5.49 30.58 0.17 -1.56 16 21 C 0.15 2.68 1.97 44.98 0.09 2.77 16 22 H 0.09 1.75 7.58 -2.39 -0.02 1.73 16 23 N -0.72 -11.44 4.80 -442.61 -2.13 -13.57 16 24 C 0.53 8.37 7.12 87.66 0.62 9.00 16 25 O -0.56 -11.81 15.58 -3.03 -0.05 -11.86 16 26 C -0.10 -1.19 2.70 -11.54 -0.03 -1.22 16 27 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 28 C -0.15 -1.43 8.90 71.98 0.64 -0.79 16 29 C 0.00 -0.04 4.54 28.79 0.13 0.09 16 30 C 0.24 3.96 14.40 89.45 1.29 5.25 16 31 N -0.49 -11.85 18.54 20.00 0.37 -11.48 16 32 H 0.07 3.37 6.07 -2.39 -0.01 3.36 16 33 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.05 1.75 7.56 -2.39 -0.02 1.74 16 35 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 36 H 0.41 10.55 8.02 -92.71 -0.74 9.80 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.41 6.21 8.02 -92.70 -0.74 5.47 16 46 H 0.07 0.67 7.56 -2.39 -0.02 0.65 16 47 H 0.06 0.70 7.38 -2.39 -0.02 0.68 16 48 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.13 1.21 7.95 -2.39 -0.02 1.19 16 50 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -71.46 406.39 3.19 -68.28 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -0.53 Total: 21.60 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 5.42 Total: 2.69 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -3.64 Total: -98.38 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -0.09 Total: -40.35 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -71.46 3.19 -68.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597839853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.629 kcal (2) G-P(sol) polarization free energy of solvation -71.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds