Wall clock time and date at job start Tue Mar 31 2020 19:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47601 * 2 1 4 4 C 1.50702 * 109.47095 * 240.00145 * 2 1 3 5 5 H 1.07996 * 120.00354 * 245.45495 * 4 2 1 6 6 C 1.37875 * 119.99615 * 65.45692 * 4 2 1 7 7 N 1.31513 * 120.00510 * 9.61935 * 6 4 2 8 8 Si 1.86806 * 119.99917 * 189.61879 * 6 4 2 9 9 H 1.48493 * 109.47118 * 84.99513 * 8 6 4 10 10 H 1.48507 * 109.47224 * 204.99670 * 8 6 4 11 11 H 1.48503 * 109.47123 * 324.99175 * 8 6 4 12 12 N 1.46503 * 109.47143 * 120.00535 * 2 1 3 13 13 C 1.46496 * 120.00066 * 59.99786 * 12 2 1 14 14 C 1.34779 * 119.99970 * 240.00042 * 12 2 1 15 15 O 1.21286 * 119.99883 * 359.97438 * 14 12 2 16 16 C 1.50688 * 119.99932 * 180.02562 * 14 12 2 17 17 H 1.09007 * 112.85663 * 48.80094 * 16 14 12 18 18 C 1.53783 * 113.69089 * 277.53118 * 16 14 12 19 19 C 1.53781 * 87.08256 * 220.00904 * 18 16 14 20 20 C 1.53778 * 87.08164 * 25.43008 * 19 18 16 21 21 H 1.09008 * 113.68992 * 89.12295 * 20 19 18 22 22 C 1.50701 * 113.61809 * 220.01368 * 20 19 18 23 23 O 1.21285 * 119.99493 * 97.49533 * 22 20 19 24 24 N 1.34771 * 120.00189 * 277.50406 * 22 20 19 25 25 C 1.46505 * 120.00076 * 359.97438 * 24 22 20 26 26 C 1.46502 * 119.99681 * 179.97438 * 24 22 20 27 27 H 1.08997 * 109.47243 * 0.02562 * 26 24 22 28 28 C 1.52992 * 109.47053 * 239.99478 * 26 24 22 29 29 C 1.53006 * 109.46987 * 120.00098 * 26 24 22 30 30 C 1.47199 * 109.46779 * 294.99679 * 29 26 24 31 31 N 7.04555 * 156.74485 * 43.19267 * 2 1 3 32 32 H 1.09002 * 109.47331 * 183.28523 * 1 2 3 33 33 H 1.09005 * 109.47418 * 303.28355 * 1 2 3 34 34 H 1.08999 * 109.47208 * 63.28091 * 1 2 3 35 35 H 0.96999 * 120.00399 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.47485 * 269.99918 * 13 12 2 37 37 H 1.08997 * 109.47305 * 30.00251 * 13 12 2 38 38 H 1.09000 * 109.47407 * 150.00033 * 13 12 2 39 39 H 1.08993 * 113.61489 * 334.56046 * 18 16 14 40 40 H 1.08998 * 113.61448 * 105.38054 * 18 16 14 41 41 H 1.09000 * 113.61930 * 270.88415 * 19 18 16 42 42 H 1.08998 * 113.61525 * 139.98301 * 19 18 16 43 43 H 1.08993 * 109.47073 * 270.00607 * 25 24 22 44 44 H 1.08998 * 109.46866 * 30.00588 * 25 24 22 45 45 H 1.09001 * 109.46387 * 150.00163 * 25 24 22 46 46 H 1.09007 * 109.47586 * 300.00270 * 28 26 24 47 47 H 1.08998 * 109.47314 * 180.02562 * 28 26 24 48 48 H 1.09001 * 109.47233 * 60.00367 * 28 26 24 49 49 H 1.08997 * 109.47351 * 54.99333 * 29 26 24 50 50 H 1.08993 * 109.47248 * 174.99854 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5786 -1.6370 -1.1339 6 6 1.7944 -0.1773 -2.4796 7 7 1.3002 1.0361 -2.5935 8 14 2.1742 -1.1786 -4.0102 9 1 1.0213 -2.0604 -4.3235 10 1 2.4213 -0.2623 -5.1525 11 1 3.3821 -2.0088 -3.7715 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4279 14 6 2.7931 -0.0358 2.0834 15 8 3.0865 1.1253 1.8913 16 6 3.2959 -0.7464 3.3134 17 1 3.7425 -1.7154 3.0897 18 6 2.2752 -0.7892 4.4628 19 6 3.4540 -0.5254 5.4146 20 6 4.1655 0.1372 4.2232 21 1 3.9567 1.2027 4.1258 22 6 5.6367 -0.1802 4.1460 23 8 6.0287 -1.0635 3.4132 24 7 6.5166 0.5174 4.8913 25 6 6.0430 1.5847 5.7762 26 6 7.9467 0.2084 4.8165 27 1 8.1058 -0.6073 4.1112 28 6 8.4517 -0.2069 6.1997 29 6 8.7120 1.4464 4.3449 30 6 8.3121 1.7750 2.9669 31 7 8.0031 2.0281 1.9040 32 1 -0.3634 -1.0260 0.0589 33 1 -0.3634 0.5640 0.8591 34 1 -0.3633 0.4620 -0.9179 35 1 1.1325 1.4110 -3.4723 36 1 0.7375 -2.1446 1.9992 37 1 1.5294 -2.5969 0.4707 38 1 2.4628 -2.5821 1.9862 39 1 1.5487 0.0227 4.4321 40 1 1.8123 -1.7665 4.5995 41 1 3.9438 -1.4338 5.7654 42 1 3.2167 0.1674 6.2219 43 1 6.0326 2.5293 5.2327 44 1 5.0350 1.3516 6.1192 45 1 6.7092 1.6668 6.6350 46 1 8.2926 0.6091 6.9048 47 1 9.5158 -0.4364 6.1443 48 1 7.9065 -1.0889 6.5359 49 1 8.4826 2.2869 4.9999 50 1 9.7827 1.2447 4.3741 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601037361.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:34 Heat of formation + Delta-G solvation = -20.515818 kcal Electronic energy + Delta-G solvation = -30286.885850 eV Core-core repulsion = 26315.375577 eV Total energy + Delta-G solvation = -3971.510272 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.89089 -39.27047 -37.57789 -36.66045 -35.85269 -35.12267 -32.84270 -32.61993 -29.65223 -28.57965 -27.20804 -26.79037 -26.47257 -25.85920 -25.08984 -22.41918 -21.51274 -20.02445 -19.06245 -18.37082 -17.94305 -17.37972 -16.71414 -16.40620 -15.86674 -15.67311 -15.43334 -14.75247 -14.47522 -14.38357 -14.12061 -13.95501 -13.55559 -13.46517 -13.09327 -12.81381 -12.74413 -12.63728 -12.54174 -12.43396 -12.33833 -12.19371 -11.92172 -11.83176 -11.69961 -11.67597 -11.42702 -11.40969 -11.19992 -10.95374 -10.91687 -10.76279 -10.65122 -10.46561 -10.18690 -10.10251 -9.60665 -9.15202 -8.89470 -8.73082 -8.32061 -7.49376 -6.00949 -4.05000 2.57774 2.73547 2.80677 2.88087 3.32929 3.39175 3.41357 3.47233 3.84963 4.04419 4.35491 4.45222 4.48963 4.53338 4.62769 4.75796 4.78992 4.84114 4.84327 5.06889 5.08480 5.12607 5.22924 5.30301 5.30488 5.41235 5.47516 5.61240 5.63566 5.65948 5.73485 5.78045 5.82692 5.94597 6.00992 6.11332 6.29407 6.40862 6.47530 6.73514 6.81468 7.05707 7.19467 7.43135 7.62305 7.63516 7.78571 8.01826 8.15393 8.26633 8.63748 8.94357 9.17831 9.59773 11.06542 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013173 B = 0.003380 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.106157 B = 8282.848750 C = 9492.636355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.255 3.745 3 H 0.068 0.932 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.589 5.589 13 C 0.084 3.916 14 C 0.515 3.485 15 O -0.553 6.553 16 C -0.113 4.113 17 H 0.120 0.880 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.115 4.115 21 H 0.125 0.875 22 C 0.532 3.468 23 O -0.530 6.530 24 N -0.618 5.618 25 C 0.073 3.927 26 C 0.136 3.864 27 H 0.109 0.891 28 C -0.158 4.158 29 C -0.034 4.034 30 C 0.187 3.813 31 N -0.410 5.410 32 H 0.031 0.969 33 H 0.014 0.986 34 H 0.075 0.925 35 H 0.263 0.737 36 H 0.042 0.958 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.066 0.934 49 H 0.109 0.891 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.066 -2.697 25.379 27.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.155 3.845 3 H 0.086 0.914 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.320 5.320 13 C -0.060 4.060 14 C 0.301 3.699 15 O -0.432 6.432 16 C -0.135 4.135 17 H 0.138 0.862 18 C -0.158 4.158 19 C -0.158 4.158 20 C -0.136 4.136 21 H 0.143 0.857 22 C 0.320 3.680 23 O -0.405 6.405 24 N -0.352 5.352 25 C -0.070 4.070 26 C 0.032 3.968 27 H 0.127 0.873 28 C -0.216 4.216 29 C -0.075 4.075 30 C -0.132 4.132 31 N -0.086 5.086 32 H 0.050 0.950 33 H 0.034 0.966 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.085 0.915 49 H 0.127 0.873 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.885 -2.041 23.096 25.205 hybrid contribution 0.300 -0.555 -0.611 0.878 sum 10.185 -2.596 22.485 24.820 Atomic orbital electron populations 1.21998 0.98643 0.98790 1.00288 1.18924 0.90314 0.95091 0.80151 0.91379 1.21290 1.36305 1.08582 0.90455 0.92237 1.24893 0.95168 0.94620 0.98927 1.69975 1.44599 1.13714 1.23979 0.86581 0.78691 0.80064 0.82539 1.20475 1.21208 1.19948 1.48144 1.49040 1.11481 1.23307 1.21600 0.98713 0.83479 1.02193 1.20087 0.78951 0.86945 0.83902 1.90637 1.58483 1.17359 1.76751 1.22667 0.97016 1.00613 0.93216 0.86236 1.22766 0.96093 1.03105 0.93859 1.22817 0.96653 1.00749 0.95573 1.22694 0.90016 1.02843 0.98097 0.85682 1.20613 0.88243 0.80766 0.78331 1.90695 1.79876 1.31691 1.38258 1.47894 1.06199 1.36744 1.44405 1.21849 1.01051 0.90287 0.93827 1.21023 0.80009 0.96795 0.99016 0.87274 1.22108 1.01828 1.02273 0.95387 1.19696 1.02085 1.00209 0.85461 1.28953 0.94522 0.94579 0.95098 1.81342 1.07183 1.07616 1.12446 0.94960 0.96641 0.90655 0.92754 0.93960 0.90316 0.92731 0.89321 0.90217 0.89576 0.90301 0.92485 0.90412 0.90618 0.91728 0.90863 0.91518 0.87341 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.12 37.15 0.34 -3.05 16 2 C 0.26 6.90 2.50 -69.08 -0.17 6.73 16 3 H 0.07 2.16 6.84 -51.93 -0.36 1.80 16 4 C -0.53 -15.20 8.01 -34.44 -0.28 -15.47 16 5 H 0.06 1.70 7.16 -52.49 -0.38 1.32 16 6 C 0.07 1.93 5.17 -17.82 -0.09 1.84 16 7 N -0.89 -26.62 12.16 55.43 0.67 -25.94 16 8 Si 0.89 22.23 29.55 -169.99 -5.02 17.20 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 12 N -0.59 -13.45 2.75 -175.27 -0.48 -13.93 16 13 C 0.08 1.51 9.17 59.84 0.55 2.06 16 14 C 0.51 11.47 7.21 -10.99 -0.08 11.39 16 15 O -0.55 -14.62 15.23 5.55 0.08 -14.54 16 16 C -0.11 -1.85 2.28 -90.96 -0.21 -2.06 16 17 H 0.12 2.00 6.24 -51.93 -0.32 1.67 16 18 C -0.12 -1.42 7.61 -25.92 -0.20 -1.61 16 19 C -0.12 -1.15 6.92 -25.92 -0.18 -1.33 16 20 C -0.12 -1.60 2.11 -90.96 -0.19 -1.80 16 21 H 0.13 1.88 7.14 -51.92 -0.37 1.51 16 22 C 0.53 7.76 7.20 -10.99 -0.08 7.68 16 23 O -0.53 -9.89 15.23 5.55 0.08 -9.80 16 24 N -0.62 -6.22 2.46 -173.93 -0.43 -6.65 16 25 C 0.07 0.47 9.07 59.85 0.54 1.02 16 26 C 0.14 1.08 2.62 -67.93 -0.18 0.91 16 27 H 0.11 1.18 6.90 -51.93 -0.36 0.82 16 28 C -0.16 -0.67 9.17 37.15 0.34 -0.33 16 29 C -0.03 -0.22 5.14 -29.52 -0.15 -0.37 16 30 C 0.19 2.46 15.14 -20.78 -0.31 2.14 16 31 N -0.41 -7.49 18.53 42.13 0.78 -6.71 16 32 H 0.03 0.71 7.56 -51.93 -0.39 0.32 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 2.00 6.84 -51.93 -0.36 1.64 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.50 6.92 -51.93 -0.36 1.14 16 38 H 0.05 0.85 6.22 -51.93 -0.32 0.52 16 39 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 42 H 0.08 0.56 7.68 -51.93 -0.40 0.16 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.47 5.79 -51.93 -0.30 0.17 16 45 H 0.08 0.25 6.43 -51.93 -0.33 -0.08 16 46 H 0.06 0.17 6.66 -51.93 -0.35 -0.18 16 47 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 48 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.11 0.42 7.51 -51.93 -0.39 0.03 16 50 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 403.02 15.07 6.07 6.07 Total: -1.00 -40.29 403.02 -6.50 -46.80 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.92 Total: -0.26 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -0.35 Total: 7.75 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.54 Total: -53.23 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: 0.17 Total: -24.34 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -40.29 -6.50 -46.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601037361.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.280 kcal (2) G-P(sol) polarization free energy of solvation -40.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds