Wall clock time and date at job start Tue Mar 31 2020 19:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47601 * 2 1 4 4 C 1.50702 * 109.47095 * 240.00145 * 2 1 3 5 5 H 1.07996 * 120.00354 * 245.45495 * 4 2 1 6 6 C 1.37875 * 119.99615 * 65.45692 * 4 2 1 7 7 N 1.31513 * 120.00510 * 9.61935 * 6 4 2 8 8 Si 1.86806 * 119.99917 * 189.61879 * 6 4 2 9 9 H 1.48493 * 109.47118 * 84.99513 * 8 6 4 10 10 H 1.48507 * 109.47224 * 204.99670 * 8 6 4 11 11 H 1.48503 * 109.47123 * 324.99175 * 8 6 4 12 12 N 1.46503 * 109.47143 * 120.00535 * 2 1 3 13 13 C 1.46496 * 120.00066 * 59.99786 * 12 2 1 14 14 C 1.34779 * 119.99970 * 240.00042 * 12 2 1 15 15 O 1.21286 * 119.99883 * 359.97438 * 14 12 2 16 16 C 1.50688 * 119.99932 * 180.02562 * 14 12 2 17 17 H 1.09007 * 112.85663 * 48.80094 * 16 14 12 18 18 C 1.53783 * 113.69089 * 277.53118 * 16 14 12 19 19 C 1.53781 * 87.08256 * 220.00904 * 18 16 14 20 20 C 1.53778 * 87.08164 * 25.43008 * 19 18 16 21 21 H 1.09008 * 113.68992 * 89.12295 * 20 19 18 22 22 C 1.50701 * 113.61809 * 220.01368 * 20 19 18 23 23 O 1.21285 * 119.99493 * 97.49533 * 22 20 19 24 24 N 1.34771 * 120.00189 * 277.50406 * 22 20 19 25 25 C 1.46505 * 120.00076 * 359.97438 * 24 22 20 26 26 C 1.46502 * 119.99681 * 179.97438 * 24 22 20 27 27 H 1.08997 * 109.47243 * 0.02562 * 26 24 22 28 28 C 1.52992 * 109.47053 * 239.99478 * 26 24 22 29 29 C 1.53006 * 109.46987 * 120.00098 * 26 24 22 30 30 C 1.47199 * 109.46779 * 294.99679 * 29 26 24 31 31 N 7.04555 * 156.74485 * 43.19267 * 2 1 3 32 32 H 1.09002 * 109.47331 * 183.28523 * 1 2 3 33 33 H 1.09005 * 109.47418 * 303.28355 * 1 2 3 34 34 H 1.08999 * 109.47208 * 63.28091 * 1 2 3 35 35 H 0.96999 * 120.00399 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.47485 * 269.99918 * 13 12 2 37 37 H 1.08997 * 109.47305 * 30.00251 * 13 12 2 38 38 H 1.09000 * 109.47407 * 150.00033 * 13 12 2 39 39 H 1.08993 * 113.61489 * 334.56046 * 18 16 14 40 40 H 1.08998 * 113.61448 * 105.38054 * 18 16 14 41 41 H 1.09000 * 113.61930 * 270.88415 * 19 18 16 42 42 H 1.08998 * 113.61525 * 139.98301 * 19 18 16 43 43 H 1.08993 * 109.47073 * 270.00607 * 25 24 22 44 44 H 1.08998 * 109.46866 * 30.00588 * 25 24 22 45 45 H 1.09001 * 109.46387 * 150.00163 * 25 24 22 46 46 H 1.09007 * 109.47586 * 300.00270 * 28 26 24 47 47 H 1.08998 * 109.47314 * 180.02562 * 28 26 24 48 48 H 1.09001 * 109.47233 * 60.00367 * 28 26 24 49 49 H 1.08997 * 109.47351 * 54.99333 * 29 26 24 50 50 H 1.08993 * 109.47248 * 174.99854 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5786 -1.6370 -1.1339 6 6 1.7944 -0.1773 -2.4796 7 7 1.3002 1.0361 -2.5935 8 14 2.1742 -1.1786 -4.0102 9 1 1.0213 -2.0604 -4.3235 10 1 2.4213 -0.2623 -5.1525 11 1 3.3821 -2.0088 -3.7715 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4279 14 6 2.7931 -0.0358 2.0834 15 8 3.0865 1.1253 1.8913 16 6 3.2959 -0.7464 3.3134 17 1 3.7425 -1.7154 3.0897 18 6 2.2752 -0.7892 4.4628 19 6 3.4540 -0.5254 5.4146 20 6 4.1655 0.1372 4.2232 21 1 3.9567 1.2027 4.1258 22 6 5.6367 -0.1802 4.1460 23 8 6.0287 -1.0635 3.4132 24 7 6.5166 0.5174 4.8913 25 6 6.0430 1.5847 5.7762 26 6 7.9467 0.2084 4.8165 27 1 8.1058 -0.6073 4.1112 28 6 8.4517 -0.2069 6.1997 29 6 8.7120 1.4464 4.3449 30 6 8.3121 1.7750 2.9669 31 7 8.0031 2.0281 1.9040 32 1 -0.3634 -1.0260 0.0589 33 1 -0.3634 0.5640 0.8591 34 1 -0.3633 0.4620 -0.9179 35 1 1.1325 1.4110 -3.4723 36 1 0.7375 -2.1446 1.9992 37 1 1.5294 -2.5969 0.4707 38 1 2.4628 -2.5821 1.9862 39 1 1.5487 0.0227 4.4321 40 1 1.8123 -1.7665 4.5995 41 1 3.9438 -1.4338 5.7654 42 1 3.2167 0.1674 6.2219 43 1 6.0326 2.5293 5.2327 44 1 5.0350 1.3516 6.1192 45 1 6.7092 1.6668 6.6350 46 1 8.2926 0.6091 6.9048 47 1 9.5158 -0.4364 6.1443 48 1 7.9065 -1.0889 6.5359 49 1 8.4826 2.2869 4.9999 50 1 9.7827 1.2447 4.3741 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601037361.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:33 Heat of formation + Delta-G solvation = -49.319094 kcal Electronic energy + Delta-G solvation = -30288.134853 eV Core-core repulsion = 26315.375577 eV Total energy + Delta-G solvation = -3972.759276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.02347 -40.60652 -38.76265 -37.86417 -37.03737 -36.91215 -34.80483 -33.49105 -31.65604 -29.12604 -27.98881 -27.87692 -27.58441 -27.40483 -27.26575 -23.27339 -23.14353 -21.14134 -20.21999 -19.75320 -18.89215 -18.63993 -18.34334 -17.85122 -17.28273 -17.14105 -16.54790 -16.30520 -16.03629 -15.56086 -15.21751 -15.02630 -14.74105 -14.48537 -14.33332 -14.03253 -13.97108 -13.84953 -13.77769 -13.70274 -13.42981 -13.15576 -13.13041 -12.99414 -12.90354 -12.83892 -12.79825 -12.69461 -12.53636 -12.45047 -12.42358 -12.32736 -12.15726 -11.97525 -11.74775 -11.44308 -11.30005 -10.67385 -10.61160 -10.44900 -9.69118 -9.36750 -8.23772 -6.37344 1.32884 1.35447 1.44691 1.53055 1.75830 1.78574 1.81647 2.00101 2.30413 2.48134 3.04328 3.07475 3.30734 3.53687 3.60553 3.73318 3.80598 3.94653 4.14568 4.24916 4.32180 4.36693 4.44783 4.64054 4.64548 4.68442 4.68991 4.73466 4.75172 4.76932 4.81771 4.83813 4.94668 4.95695 5.00536 5.02160 5.03839 5.04903 5.19411 5.37263 5.41361 5.48004 5.50152 5.60810 5.66933 5.96924 6.07770 6.31860 6.63162 6.70825 6.81027 7.15251 7.26320 7.45292 8.83100 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013173 B = 0.003380 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.106157 B = 8282.848750 C = 9492.636355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.259 3.741 3 H 0.006 0.994 4 C -0.545 4.545 5 H 0.056 0.944 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.258 1.258 10 H -0.284 1.284 11 H -0.276 1.276 12 N -0.599 5.599 13 C 0.082 3.918 14 C 0.501 3.499 15 O -0.610 6.610 16 C -0.121 4.121 17 H 0.116 0.884 18 C -0.109 4.109 19 C -0.089 4.089 20 C -0.122 4.122 21 H 0.107 0.893 22 C 0.520 3.480 23 O -0.587 6.587 24 N -0.610 5.610 25 C 0.062 3.938 26 C 0.130 3.870 27 H 0.072 0.928 28 C -0.145 4.145 29 C -0.033 4.033 30 C 0.221 3.779 31 N -0.518 5.518 32 H 0.056 0.944 33 H 0.027 0.973 34 H 0.049 0.951 35 H 0.265 0.735 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.048 0.952 44 H 0.085 0.915 45 H 0.121 0.879 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.055 0.945 49 H 0.149 0.851 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.783 -4.315 29.586 31.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.156 3.844 3 H 0.024 0.976 4 C -0.584 4.584 5 H 0.074 0.926 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.787 3.213 9 H -0.182 1.182 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.329 5.329 13 C -0.060 4.060 14 C 0.290 3.710 15 O -0.494 6.494 16 C -0.142 4.142 17 H 0.134 0.866 18 C -0.146 4.146 19 C -0.127 4.127 20 C -0.144 4.144 21 H 0.125 0.875 22 C 0.309 3.691 23 O -0.467 6.467 24 N -0.343 5.343 25 C -0.079 4.079 26 C 0.025 3.975 27 H 0.090 0.910 28 C -0.203 4.203 29 C -0.073 4.073 30 C -0.096 4.096 31 N -0.196 5.196 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.134 0.866 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.139 0.861 46 H 0.112 0.888 47 H 0.114 0.886 48 H 0.074 0.926 49 H 0.167 0.833 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 10.603 -3.669 27.373 29.583 hybrid contribution 0.160 0.012 -1.858 1.865 sum 10.763 -3.657 25.515 27.933 Atomic orbital electron populations 1.21752 0.96608 1.00154 0.99471 1.18525 0.91790 0.92253 0.81785 0.97616 1.21572 1.36586 1.08557 0.91655 0.92599 1.25782 0.94940 0.95560 1.02194 1.70116 1.45513 1.15237 1.24790 0.85509 0.78951 0.78557 0.78265 1.18210 1.21001 1.20084 1.48211 1.49157 1.13327 1.22160 1.21838 1.01261 0.80520 1.02421 1.21263 0.77829 0.86627 0.85262 1.90593 1.60330 1.20158 1.78286 1.22785 0.99842 1.00049 0.91530 0.86635 1.22812 0.95889 1.04511 0.91432 1.22779 0.93863 1.01553 0.94479 1.22749 0.90112 1.01624 0.99919 0.87459 1.20825 0.89128 0.80754 0.78361 1.90662 1.80706 1.34495 1.40831 1.48041 1.06741 1.36164 1.43322 1.22185 1.02834 0.88506 0.94375 1.21249 0.79000 0.96272 1.00931 0.90983 1.22050 1.02758 1.02769 0.92674 1.20301 1.04389 1.00871 0.81693 1.30322 0.91705 0.91614 0.95930 1.81365 1.10806 1.11337 1.16080 0.92504 0.95408 0.93208 0.92597 0.90509 0.91583 0.90252 0.89919 0.87407 0.87886 0.86642 0.93349 0.89627 0.86058 0.88812 0.88647 0.92559 0.83311 0.81796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.09 9.12 71.98 0.66 -5.43 16 2 C 0.26 14.74 2.50 44.24 0.11 14.86 16 3 H 0.01 0.40 6.84 -2.39 -0.02 0.38 16 4 C -0.55 -32.72 8.01 25.60 0.20 -32.51 16 5 H 0.06 3.31 7.16 -2.91 -0.02 3.29 16 6 C 0.02 0.90 5.17 84.65 0.44 1.34 16 7 N -0.92 -57.66 12.16 21.45 0.26 -57.40 16 8 Si 0.96 46.74 29.55 68.60 2.03 48.77 16 9 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 10 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 N -0.60 -28.36 2.75 -826.82 -2.28 -30.63 16 13 C 0.08 2.89 9.17 127.77 1.17 4.06 16 14 C 0.50 23.53 7.21 87.65 0.63 24.16 16 15 O -0.61 -35.01 15.23 -3.05 -0.05 -35.06 16 16 C -0.12 -3.97 2.28 -11.02 -0.03 -3.99 16 17 H 0.12 3.90 6.24 -2.38 -0.01 3.89 16 18 C -0.11 -2.29 7.61 31.12 0.24 -2.05 16 19 C -0.09 -1.41 6.92 31.12 0.22 -1.20 16 20 C -0.12 -3.40 2.11 -11.01 -0.02 -3.42 16 21 H 0.11 3.36 7.14 -2.38 -0.02 3.34 16 22 C 0.52 15.37 7.20 87.66 0.63 16.00 16 23 O -0.59 -23.04 15.23 -3.05 -0.05 -23.08 16 24 N -0.61 -11.36 2.46 -822.59 -2.02 -13.39 16 25 C 0.06 0.61 9.07 127.77 1.16 1.77 16 26 C 0.13 1.79 2.62 44.99 0.12 1.90 16 27 H 0.07 1.57 6.90 -2.39 -0.02 1.56 16 28 C -0.14 -0.58 9.17 71.98 0.66 0.08 16 29 C -0.03 -0.32 5.14 28.79 0.15 -0.18 16 30 C 0.22 5.92 15.14 89.45 1.35 7.28 16 31 N -0.52 -20.43 18.53 20.00 0.37 -20.06 16 32 H 0.06 2.51 7.56 -2.39 -0.02 2.50 16 33 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.05 2.73 6.84 -2.39 -0.02 2.71 16 35 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 36 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.07 2.50 6.92 -2.39 -0.02 2.48 16 38 H 0.08 2.39 6.22 -2.39 -0.01 2.37 16 39 H 0.08 1.88 8.10 -2.39 -0.02 1.86 16 40 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.10 1.37 8.09 -2.39 -0.02 1.35 16 42 H 0.12 1.06 7.68 -2.39 -0.02 1.04 16 43 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.09 0.73 5.79 -2.39 -0.01 0.72 16 45 H 0.12 0.09 6.43 -2.39 -0.02 0.08 16 46 H 0.09 -0.13 6.66 -2.38 -0.02 -0.14 16 47 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 48 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 49 H 0.15 0.41 7.51 -2.39 -0.02 0.40 16 50 H 0.16 0.27 8.14 -2.39 -0.02 0.25 16 Total: -1.00 -102.50 403.02 6.90 -95.60 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.94 Total: 12.60 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: 7.69 Total: 22.65 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -3.67 Total: -121.48 kcal Atomic # 8 Polarization: -58.05 SS G_CDS: -0.09 Total: -58.14 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -102.50 6.90 -95.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601037361.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.283 kcal (2) G-P(sol) polarization free energy of solvation -102.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds