Wall clock time and date at job start Tue Mar 31 2020 19:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47210 * 2 1 4 4 C 1.53004 * 109.46976 * 239.99972 * 2 1 3 5 5 C 1.47200 * 109.46602 * 175.00114 * 4 2 1 6 6 N 3.43549 * 154.82653 * 248.43307 * 2 1 3 7 7 N 1.46497 * 109.47064 * 120.00113 * 2 1 3 8 8 C 1.46504 * 119.99981 * 59.99887 * 7 2 1 9 9 C 1.34774 * 119.99956 * 240.00216 * 7 2 1 10 10 O 1.21283 * 120.00109 * 359.97438 * 9 7 2 11 11 C 1.50709 * 119.99888 * 179.97438 * 9 7 2 12 12 H 1.08992 * 112.85039 * 312.52223 * 11 9 7 13 13 C 1.53782 * 113.61203 * 181.20840 * 11 9 7 14 14 C 1.54055 * 87.07517 * 220.02473 * 13 11 9 15 15 C 1.53784 * 86.98732 * 25.43378 * 14 13 11 16 16 H 1.08999 * 113.61232 * 219.98069 * 15 14 13 17 17 C 1.50701 * 113.61215 * 89.15648 * 15 14 13 18 18 O 1.21272 * 120.00207 * 284.75376 * 17 15 14 19 19 N 1.34778 * 119.99484 * 104.76052 * 17 15 14 20 20 C 1.46497 * 120.00031 * 359.97438 * 19 17 15 21 21 C 1.46497 * 120.00169 * 179.97438 * 19 17 15 22 22 H 1.09009 * 109.46986 * 359.97438 * 21 19 17 23 23 C 1.53005 * 109.47488 * 119.99211 * 21 19 17 24 24 C 1.50696 * 109.47483 * 239.99781 * 21 19 17 25 25 H 1.08000 * 119.99894 * 359.97438 * 24 21 19 26 26 C 1.37877 * 120.00324 * 179.97438 * 24 21 19 27 27 N 1.31509 * 119.99802 * 359.97438 * 26 24 21 28 28 Si 1.86804 * 119.99934 * 179.97438 * 26 24 21 29 29 H 1.48493 * 109.47134 * 359.97438 * 28 26 24 30 30 H 1.48500 * 109.46822 * 120.00050 * 28 26 24 31 31 H 1.48500 * 109.46683 * 239.99701 * 28 26 24 32 32 H 1.08998 * 109.47044 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47159 * 300.00107 * 1 2 3 34 34 H 1.09002 * 109.46789 * 60.00040 * 1 2 3 35 35 H 1.08994 * 109.47162 * 295.00204 * 4 2 1 36 36 H 1.09001 * 109.47049 * 55.00657 * 4 2 1 37 37 H 1.09000 * 109.47033 * 270.00120 * 8 7 2 38 38 H 1.08998 * 109.47086 * 30.00285 * 8 7 2 39 39 H 1.08994 * 109.47078 * 150.00229 * 8 7 2 40 40 H 1.09000 * 113.61692 * 334.57108 * 13 11 9 41 41 H 1.08997 * 113.60767 * 105.39355 * 13 11 9 42 42 H 1.08999 * 113.61448 * 270.93120 * 14 13 11 43 43 H 1.09003 * 113.69030 * 139.95017 * 14 13 11 44 44 H 1.09012 * 109.47314 * 270.00345 * 20 19 17 45 45 H 1.08993 * 109.47593 * 30.00183 * 20 19 17 46 46 H 1.09006 * 109.47054 * 150.00960 * 20 19 17 47 47 H 1.08998 * 109.46957 * 300.00910 * 23 21 19 48 48 H 1.08995 * 109.46522 * 60.00208 * 23 21 19 49 49 H 1.08998 * 109.47007 * 179.97438 * 23 21 19 50 50 H 0.96999 * 120.00345 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 3.5071 -0.6174 -1.3112 6 7 4.6393 -0.5372 -1.3590 7 7 2.0184 -0.6906 1.1961 8 6 1.6644 -2.0932 1.4280 9 6 2.7932 -0.0356 2.0833 10 8 3.0865 1.1254 1.8912 11 6 3.2950 -0.7460 3.3141 12 1 2.5114 -1.2972 3.8338 13 6 4.1402 0.1462 4.2386 14 6 5.0597 -1.0727 4.4435 15 6 4.5711 -1.5697 3.0726 16 1 4.3961 -2.6448 3.0350 17 6 5.4020 -1.0710 1.9185 18 8 5.2925 0.0771 1.5439 19 7 6.2669 -1.9013 1.3027 20 6 6.3996 -3.2881 1.7557 21 6 7.0744 -1.4169 0.1805 22 1 6.8398 -0.3696 -0.0106 23 6 8.5591 -1.5529 0.5241 24 6 6.7665 -2.2324 -1.0488 25 1 6.0421 -3.0319 -0.9990 26 6 7.4096 -1.9579 -2.2371 27 7 8.2913 -0.9841 -2.2979 28 14 7.0284 -2.9693 -3.7607 29 1 6.0089 -3.9972 -3.4302 30 1 6.5062 -2.0787 -4.8281 31 1 8.2676 -3.6363 -4.2348 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.7517 -1.7715 -1.2056 36 1 1.6055 -0.2617 -2.1370 37 1 0.7376 -2.1444 1.9993 38 1 1.5296 -2.5969 0.4708 39 1 2.4628 -2.5819 1.9863 40 1 4.6235 0.9758 3.7226 41 1 3.6171 0.4571 5.1429 42 1 4.7582 -1.7127 5.2727 43 1 6.1205 -0.8226 4.4645 44 1 7.1718 -3.3476 2.5228 45 1 5.4500 -3.6278 2.1690 46 1 6.6759 -3.9210 0.9123 47 1 8.7817 -0.9631 1.4133 48 1 8.7933 -2.6002 0.7149 49 1 9.1598 -1.1929 -0.3111 50 1 8.7435 -0.7906 -3.1340 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601037362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:37 Heat of formation + Delta-G solvation = 0.535121 kcal Electronic energy + Delta-G solvation = -32392.496673 eV Core-core repulsion = 28421.899238 eV Total energy + Delta-G solvation = -3970.597435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.84033 -38.88665 -37.20970 -36.09986 -34.95271 -34.93961 -32.64066 -32.27382 -29.46616 -28.00665 -26.89436 -26.57621 -26.26286 -25.79656 -25.02733 -22.17978 -21.52022 -19.75529 -19.01159 -17.71918 -17.42842 -16.97372 -16.36016 -16.23344 -15.85024 -15.37375 -14.88950 -14.72036 -14.31288 -14.02715 -13.77441 -13.54080 -13.25408 -13.05997 -12.71741 -12.60490 -12.56114 -12.38737 -12.30347 -12.17419 -12.04688 -11.66959 -11.61200 -11.47967 -11.31792 -11.15900 -11.08425 -10.92518 -10.86991 -10.73175 -10.64112 -10.58123 -10.56197 -10.17685 -10.06187 -9.97870 -9.23345 -8.98135 -8.61596 -8.41138 -8.20264 -7.39454 -5.87320 -3.87674 3.02284 3.17497 3.31173 3.38445 3.39785 3.47548 3.82260 3.92650 4.00741 4.52037 4.61974 4.68252 4.71226 4.87062 4.96594 5.00579 5.09587 5.16183 5.26232 5.29500 5.32034 5.44871 5.47824 5.54024 5.56346 5.62750 5.69449 5.72377 5.78342 5.83514 5.91889 6.01480 6.04039 6.09220 6.16151 6.20979 6.41206 6.59362 6.78885 6.87603 6.94934 7.22150 7.57821 7.65214 7.75612 7.89773 8.19505 8.41882 8.66462 8.71298 8.75107 9.04150 9.26221 9.73434 11.19855 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011282 B = 0.005953 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.239333 B = 4702.306817 C = 6266.890458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.106 0.894 4 C -0.024 4.024 5 C 0.103 3.897 6 N -0.301 5.301 7 N -0.618 5.618 8 C 0.080 3.920 9 C 0.535 3.465 10 O -0.503 6.503 11 C -0.117 4.117 12 H 0.108 0.892 13 C -0.113 4.113 14 C -0.122 4.122 15 C -0.127 4.127 16 H 0.094 0.906 17 C 0.508 3.492 18 O -0.513 6.513 19 N -0.590 5.590 20 C 0.084 3.916 21 C 0.266 3.734 22 H 0.071 0.929 23 C -0.148 4.148 24 C -0.484 4.484 25 H 0.047 0.953 26 C 0.073 3.927 27 N -0.888 5.888 28 Si 0.883 3.117 29 H -0.278 1.278 30 H -0.287 1.287 31 H -0.287 1.287 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.039 0.961 45 H 0.049 0.951 46 H 0.077 0.923 47 H 0.006 0.994 48 H 0.025 0.975 49 H 0.092 0.908 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.277 -5.174 10.684 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.038 3.962 3 H 0.124 0.876 4 C -0.065 4.065 5 C -0.217 4.217 6 N 0.024 4.976 7 N -0.354 5.354 8 C -0.064 4.064 9 C 0.322 3.678 10 O -0.376 6.376 11 C -0.139 4.139 12 H 0.126 0.874 13 C -0.151 4.151 14 C -0.160 4.160 15 C -0.148 4.148 16 H 0.112 0.888 17 C 0.293 3.707 18 O -0.389 6.389 19 N -0.321 5.321 20 C -0.060 4.060 21 C 0.166 3.834 22 H 0.089 0.911 23 C -0.207 4.207 24 C -0.523 4.523 25 H 0.066 0.934 26 C -0.128 4.128 27 N -0.528 5.528 28 Si 0.712 3.288 29 H -0.203 1.203 30 H -0.213 1.213 31 H -0.213 1.213 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.122 0.878 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.125 0.875 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.092 0.908 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.025 0.975 48 H 0.044 0.956 49 H 0.110 0.890 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.308 -3.699 10.141 17.923 hybrid contribution -0.697 -1.240 -0.932 1.701 sum -15.005 -4.939 9.209 18.285 Atomic orbital electron populations 1.22100 0.94350 1.02338 1.02631 1.20930 0.93568 0.98562 0.83119 0.87576 1.19389 0.84742 1.02850 0.99492 1.28983 0.95026 0.99312 0.98361 1.81948 1.10043 1.02631 1.02980 1.47770 1.52371 1.12143 1.23072 1.21694 1.00273 0.82294 1.02102 1.20103 0.76809 0.87043 0.83833 1.90670 1.54316 1.17130 1.75457 1.22621 0.96454 0.98965 0.95857 0.87361 1.22887 0.96471 0.97696 0.98009 1.22769 1.00777 0.97900 0.94582 1.22608 0.95568 1.00092 0.96580 0.88835 1.19705 0.81240 0.86500 0.83279 1.90815 1.66093 1.17263 1.64717 1.48189 1.40174 1.09947 1.33832 1.21588 0.99400 0.84983 1.00020 1.18901 0.85420 0.97913 0.81165 0.91110 1.22129 1.00773 0.98012 0.99752 1.20973 1.21847 1.15819 0.93650 0.93440 1.24666 0.95212 0.94991 0.97904 1.69864 1.27201 1.29794 1.25918 0.86699 0.77835 0.80094 0.84192 1.20271 1.21296 1.21308 0.92179 0.92058 0.91251 0.88862 0.87781 0.92929 0.91091 0.91442 0.87534 0.91491 0.89498 0.90761 0.94230 0.93220 0.90427 0.97476 0.95582 0.88969 0.93283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.19 37.16 0.34 -0.95 16 2 C 0.14 1.79 2.62 -67.93 -0.18 1.61 16 3 H 0.11 1.67 6.90 -51.93 -0.36 1.32 16 4 C -0.02 -0.30 5.14 -29.52 -0.15 -0.45 16 5 C 0.10 2.04 15.14 -20.76 -0.31 1.72 16 6 N -0.30 -7.51 14.87 42.16 0.63 -6.88 16 7 N -0.62 -8.29 2.46 -173.93 -0.43 -8.72 16 8 C 0.08 0.77 9.14 59.85 0.55 1.31 16 9 C 0.53 8.90 5.41 -10.98 -0.06 8.84 16 10 O -0.50 -10.67 13.61 -16.85 -0.23 -10.90 16 11 C -0.12 -1.60 2.73 -90.95 -0.25 -1.84 16 12 H 0.11 1.08 7.78 -51.93 -0.40 0.68 16 13 C -0.11 -1.59 7.03 -25.77 -0.18 -1.78 16 14 C -0.12 -1.55 7.68 -25.77 -0.20 -1.75 16 15 C -0.13 -1.86 2.96 -90.95 -0.27 -2.13 16 16 H 0.09 1.15 5.57 -51.93 -0.29 0.86 16 17 C 0.51 10.43 6.58 -10.98 -0.07 10.36 16 18 O -0.51 -12.69 11.73 -16.84 -0.20 -12.88 16 19 N -0.59 -12.70 2.75 -175.26 -0.48 -13.18 16 20 C 0.08 1.44 9.26 59.85 0.55 2.00 16 21 C 0.27 6.93 2.12 -69.08 -0.15 6.78 16 22 H 0.07 2.21 6.43 -51.92 -0.33 1.87 16 23 C -0.15 -3.74 8.97 37.16 0.33 -3.40 16 24 C -0.48 -13.10 5.63 -34.44 -0.19 -13.29 16 25 H 0.05 1.30 7.33 -52.49 -0.38 0.91 16 26 C 0.07 2.06 5.30 -17.82 -0.09 1.97 16 27 N -0.89 -26.27 11.32 55.43 0.63 -25.64 16 28 Si 0.88 22.05 29.54 -169.99 -5.02 17.03 16 29 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 30 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 31 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 32 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.96 6.47 -51.93 -0.34 0.62 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.61 6.34 -51.93 -0.33 0.28 16 39 H 0.07 0.67 5.87 -51.93 -0.31 0.36 16 40 H 0.11 1.96 6.62 -51.93 -0.34 1.61 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 44 H 0.04 0.62 8.14 -51.92 -0.42 0.19 16 45 H 0.05 0.68 5.82 -51.93 -0.30 0.38 16 46 H 0.08 1.43 7.02 -51.93 -0.36 1.07 16 47 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 48 H 0.03 0.60 7.67 -51.93 -0.40 0.20 16 49 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 50 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 387.63 15.07 5.84 5.84 Total: -1.00 -37.45 387.63 -7.39 -44.84 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.80 Total: 1.47 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -0.33 Total: 9.01 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.34 Total: -54.41 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.43 Total: -23.78 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.45 -7.39 -44.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601037362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.378 kcal (2) G-P(sol) polarization free energy of solvation -37.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds