Wall clock time and date at job start Tue Mar 31 2020 19:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47210 * 2 1 4 4 C 1.53004 * 109.46976 * 239.99972 * 2 1 3 5 5 C 1.47200 * 109.46602 * 175.00114 * 4 2 1 6 6 N 3.43549 * 154.82653 * 248.43307 * 2 1 3 7 7 N 1.46497 * 109.47064 * 120.00113 * 2 1 3 8 8 C 1.46504 * 119.99981 * 59.99887 * 7 2 1 9 9 C 1.34774 * 119.99956 * 240.00216 * 7 2 1 10 10 O 1.21283 * 120.00109 * 359.97438 * 9 7 2 11 11 C 1.50709 * 119.99888 * 179.97438 * 9 7 2 12 12 H 1.08992 * 112.85039 * 312.52223 * 11 9 7 13 13 C 1.53782 * 113.61203 * 181.20840 * 11 9 7 14 14 C 1.54055 * 87.07517 * 220.02473 * 13 11 9 15 15 C 1.53784 * 86.98732 * 25.43378 * 14 13 11 16 16 H 1.08999 * 113.61232 * 219.98069 * 15 14 13 17 17 C 1.50701 * 113.61215 * 89.15648 * 15 14 13 18 18 O 1.21272 * 120.00207 * 284.75376 * 17 15 14 19 19 N 1.34778 * 119.99484 * 104.76052 * 17 15 14 20 20 C 1.46497 * 120.00031 * 359.97438 * 19 17 15 21 21 C 1.46497 * 120.00169 * 179.97438 * 19 17 15 22 22 H 1.09009 * 109.46986 * 359.97438 * 21 19 17 23 23 C 1.53005 * 109.47488 * 119.99211 * 21 19 17 24 24 C 1.50696 * 109.47483 * 239.99781 * 21 19 17 25 25 H 1.08000 * 119.99894 * 359.97438 * 24 21 19 26 26 C 1.37877 * 120.00324 * 179.97438 * 24 21 19 27 27 N 1.31509 * 119.99802 * 359.97438 * 26 24 21 28 28 Si 1.86804 * 119.99934 * 179.97438 * 26 24 21 29 29 H 1.48493 * 109.47134 * 359.97438 * 28 26 24 30 30 H 1.48500 * 109.46822 * 120.00050 * 28 26 24 31 31 H 1.48500 * 109.46683 * 239.99701 * 28 26 24 32 32 H 1.08998 * 109.47044 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47159 * 300.00107 * 1 2 3 34 34 H 1.09002 * 109.46789 * 60.00040 * 1 2 3 35 35 H 1.08994 * 109.47162 * 295.00204 * 4 2 1 36 36 H 1.09001 * 109.47049 * 55.00657 * 4 2 1 37 37 H 1.09000 * 109.47033 * 270.00120 * 8 7 2 38 38 H 1.08998 * 109.47086 * 30.00285 * 8 7 2 39 39 H 1.08994 * 109.47078 * 150.00229 * 8 7 2 40 40 H 1.09000 * 113.61692 * 334.57108 * 13 11 9 41 41 H 1.08997 * 113.60767 * 105.39355 * 13 11 9 42 42 H 1.08999 * 113.61448 * 270.93120 * 14 13 11 43 43 H 1.09003 * 113.69030 * 139.95017 * 14 13 11 44 44 H 1.09012 * 109.47314 * 270.00345 * 20 19 17 45 45 H 1.08993 * 109.47593 * 30.00183 * 20 19 17 46 46 H 1.09006 * 109.47054 * 150.00960 * 20 19 17 47 47 H 1.08998 * 109.46957 * 300.00910 * 23 21 19 48 48 H 1.08995 * 109.46522 * 60.00208 * 23 21 19 49 49 H 1.08998 * 109.47007 * 179.97438 * 23 21 19 50 50 H 0.96999 * 120.00345 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 3.5071 -0.6174 -1.3112 6 7 4.6393 -0.5372 -1.3590 7 7 2.0184 -0.6906 1.1961 8 6 1.6644 -2.0932 1.4280 9 6 2.7932 -0.0356 2.0833 10 8 3.0865 1.1254 1.8912 11 6 3.2950 -0.7460 3.3141 12 1 2.5114 -1.2972 3.8338 13 6 4.1402 0.1462 4.2386 14 6 5.0597 -1.0727 4.4435 15 6 4.5711 -1.5697 3.0726 16 1 4.3961 -2.6448 3.0350 17 6 5.4020 -1.0710 1.9185 18 8 5.2925 0.0771 1.5439 19 7 6.2669 -1.9013 1.3027 20 6 6.3996 -3.2881 1.7557 21 6 7.0744 -1.4169 0.1805 22 1 6.8398 -0.3696 -0.0106 23 6 8.5591 -1.5529 0.5241 24 6 6.7665 -2.2324 -1.0488 25 1 6.0421 -3.0319 -0.9990 26 6 7.4096 -1.9579 -2.2371 27 7 8.2913 -0.9841 -2.2979 28 14 7.0284 -2.9693 -3.7607 29 1 6.0089 -3.9972 -3.4302 30 1 6.5062 -2.0787 -4.8281 31 1 8.2676 -3.6363 -4.2348 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.7517 -1.7715 -1.2056 36 1 1.6055 -0.2617 -2.1370 37 1 0.7376 -2.1444 1.9993 38 1 1.5296 -2.5969 0.4708 39 1 2.4628 -2.5819 1.9863 40 1 4.6235 0.9758 3.7226 41 1 3.6171 0.4571 5.1429 42 1 4.7582 -1.7127 5.2727 43 1 6.1205 -0.8226 4.4645 44 1 7.1718 -3.3476 2.5228 45 1 5.4500 -3.6278 2.1690 46 1 6.6759 -3.9210 0.9123 47 1 8.7817 -0.9631 1.4133 48 1 8.7933 -2.6002 0.7149 49 1 9.1598 -1.1929 -0.3111 50 1 8.7435 -0.7906 -3.1340 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601037362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:36 Heat of formation + Delta-G solvation = -24.443996 kcal Electronic energy + Delta-G solvation = -32393.579849 eV Core-core repulsion = 28421.899238 eV Total energy + Delta-G solvation = -3971.680611 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.06778 -40.18957 -38.55706 -37.44206 -36.70465 -36.43077 -34.62207 -33.29664 -31.43251 -28.96169 -27.86005 -27.61136 -27.45745 -27.32652 -27.09536 -23.43361 -22.92484 -21.18634 -20.22156 -19.01716 -18.73299 -18.27132 -18.23904 -17.62887 -17.18345 -16.65278 -16.49805 -16.09809 -15.70636 -15.50974 -15.18172 -14.73165 -14.43694 -14.38485 -14.08446 -13.99417 -13.80840 -13.61237 -13.56608 -13.40514 -13.20318 -13.13114 -12.99297 -12.89309 -12.75398 -12.74032 -12.66172 -12.55135 -12.34139 -12.23948 -12.19236 -12.10589 -11.97871 -11.76812 -11.63977 -11.22188 -11.06414 -10.51175 -10.42221 -10.11538 -9.43177 -9.13608 -8.01802 -6.07296 1.30680 1.32726 1.41271 1.80158 2.03927 2.18436 2.35852 2.40432 2.43332 2.59960 3.31714 3.45795 3.53852 3.61034 3.70546 3.86489 3.95439 4.07817 4.21303 4.32879 4.39804 4.41710 4.49425 4.62226 4.72518 4.74866 4.76724 4.80660 4.82108 4.86223 4.87419 4.88441 4.98477 4.98752 5.06587 5.07740 5.12182 5.14611 5.23395 5.42774 5.49769 5.57993 5.68580 5.83806 5.84880 6.18399 6.30798 6.61839 6.92363 7.02344 7.25070 7.50321 7.54889 7.73423 9.05099 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011282 B = 0.005953 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.239333 B = 4702.306817 C = 6266.890458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.141 3.859 3 H 0.058 0.942 4 C -0.025 4.025 5 C 0.129 3.871 6 N -0.400 5.400 7 N -0.618 5.618 8 C 0.068 3.932 9 C 0.520 3.480 10 O -0.568 6.568 11 C -0.107 4.107 12 H 0.163 0.837 13 C -0.122 4.122 14 C -0.104 4.104 15 C -0.123 4.123 16 H 0.132 0.868 17 C 0.497 3.503 18 O -0.563 6.563 19 N -0.602 5.602 20 C 0.082 3.918 21 C 0.279 3.721 22 H 0.009 0.991 23 C -0.135 4.135 24 C -0.463 4.463 25 H 0.045 0.955 26 C 0.023 3.977 27 N -0.926 5.926 28 Si 0.938 3.062 29 H -0.262 1.262 30 H -0.298 1.298 31 H -0.279 1.279 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.048 0.952 41 H 0.096 0.904 42 H 0.141 0.859 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.092 0.908 46 H 0.061 0.939 47 H 0.008 0.992 48 H 0.043 0.957 49 H 0.062 0.938 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.173 -9.385 12.600 25.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.036 3.964 3 H 0.077 0.923 4 C -0.065 4.065 5 C -0.190 4.190 6 N -0.076 5.076 7 N -0.352 5.352 8 C -0.073 4.073 9 C 0.309 3.691 10 O -0.446 6.446 11 C -0.129 4.129 12 H 0.180 0.820 13 C -0.160 4.160 14 C -0.142 4.142 15 C -0.144 4.144 16 H 0.149 0.851 17 C 0.284 3.716 18 O -0.441 6.441 19 N -0.333 5.333 20 C -0.061 4.061 21 C 0.177 3.823 22 H 0.027 0.973 23 C -0.194 4.194 24 C -0.502 4.502 25 H 0.063 0.937 26 C -0.174 4.174 27 N -0.567 5.567 28 Si 0.766 3.234 29 H -0.186 1.186 30 H -0.225 1.225 31 H -0.205 1.205 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.114 0.886 42 H 0.159 0.841 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.111 0.889 46 H 0.080 0.920 47 H 0.027 0.973 48 H 0.062 0.938 49 H 0.081 0.919 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -18.240 -8.000 12.079 23.294 hybrid contribution 0.426 0.166 -1.508 1.576 sum -17.815 -7.833 10.571 22.146 Atomic orbital electron populations 1.21997 0.90215 1.04403 1.03239 1.20961 0.96436 0.96083 0.82903 0.92320 1.19925 0.79967 1.05576 1.01069 1.30357 0.96692 0.96347 0.95601 1.81985 1.13455 1.05944 1.06197 1.47955 1.51151 1.13714 1.22346 1.22054 1.01984 0.79618 1.03675 1.20761 0.76557 0.86623 0.85161 1.90648 1.56742 1.20147 1.77050 1.22806 0.96998 0.98415 0.94634 0.82005 1.22791 0.97426 0.96943 0.98866 1.22856 0.99230 0.97356 0.94747 1.22548 0.95160 1.01946 0.94765 0.85062 1.20760 0.80924 0.85715 0.84154 1.90822 1.67320 1.19720 1.66282 1.48159 1.40094 1.12070 1.32992 1.21811 1.02403 0.81975 0.99912 1.18283 0.86246 0.94691 0.83100 0.97256 1.21934 1.00152 0.98828 0.98490 1.21004 1.20454 1.14787 0.93979 0.93696 1.25364 0.95391 0.96006 1.00673 1.70033 1.28756 1.31769 1.26169 0.85809 0.78112 0.78820 0.80669 1.18627 1.22497 1.20544 0.89202 0.92624 0.89606 0.85082 0.84392 0.89236 0.89666 0.91279 0.93326 0.88594 0.84124 0.92969 0.92466 0.88925 0.91996 0.97323 0.93761 0.91948 0.93817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.19 71.98 0.66 -1.16 16 2 C 0.14 3.34 2.62 45.00 0.12 3.46 16 3 H 0.06 1.96 6.90 -2.39 -0.02 1.95 16 4 C -0.02 -0.57 5.14 28.79 0.15 -0.42 16 5 C 0.13 5.21 15.14 89.44 1.35 6.56 16 6 N -0.40 -21.03 14.87 20.01 0.30 -20.73 16 7 N -0.62 -15.21 2.46 -822.57 -2.02 -17.23 16 8 C 0.07 0.96 9.14 127.77 1.17 2.12 16 9 C 0.52 17.12 5.41 87.66 0.47 17.60 16 10 O -0.57 -25.79 13.61 18.38 0.25 -25.54 16 11 C -0.11 -2.61 2.73 -11.01 -0.03 -2.64 16 12 H 0.16 2.20 7.78 -2.39 -0.02 2.18 16 13 C -0.12 -3.33 7.03 31.21 0.22 -3.11 16 14 C -0.10 -2.30 7.68 31.22 0.24 -2.06 16 15 C -0.12 -3.24 2.96 -11.01 -0.03 -3.27 16 16 H 0.13 2.44 5.57 -2.39 -0.01 2.43 16 17 C 0.50 20.65 6.58 87.66 0.58 21.23 16 18 O -0.56 -29.80 11.73 18.41 0.22 -29.58 16 19 N -0.60 -26.07 2.75 -826.79 -2.28 -28.34 16 20 C 0.08 2.59 9.26 127.77 1.18 3.77 16 21 C 0.28 15.25 2.12 44.25 0.09 15.34 16 22 H 0.01 0.64 6.43 -2.38 -0.02 0.63 16 23 C -0.14 -7.13 8.97 71.98 0.65 -6.49 16 24 C -0.46 -25.80 5.63 25.60 0.14 -25.66 16 25 H 0.04 2.47 7.33 -2.91 -0.02 2.45 16 26 C 0.02 1.33 5.30 84.66 0.45 1.78 16 27 N -0.93 -57.85 11.32 21.45 0.24 -57.61 16 28 Si 0.94 46.21 29.54 68.60 2.03 48.24 16 29 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 30 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 31 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 32 H 0.09 0.67 7.67 -2.39 -0.02 0.65 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.13 2.08 6.47 -2.39 -0.02 2.07 16 36 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.08 0.97 6.34 -2.39 -0.02 0.95 16 39 H 0.07 0.97 5.87 -2.39 -0.01 0.96 16 40 H 0.05 1.92 6.62 -2.39 -0.02 1.90 16 41 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.05 1.40 8.09 -2.39 -0.02 1.38 16 44 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.09 2.10 5.82 -2.39 -0.01 2.08 16 46 H 0.06 2.16 7.02 -2.38 -0.02 2.14 16 47 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.04 2.10 7.67 -2.39 -0.02 2.08 16 49 H 0.06 3.67 6.07 -2.39 -0.01 3.65 16 50 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -97.14 387.63 7.10 -90.04 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.95 Total: 13.70 kcal Atomic # 6 Polarization: 19.65 SS G_CDS: 7.41 Total: 27.06 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -3.76 Total: -123.91 kcal Atomic # 8 Polarization: -55.59 SS G_CDS: 0.47 Total: -55.12 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -97.14 7.10 -90.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601037362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.598 kcal (2) G-P(sol) polarization free energy of solvation -97.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds