Wall clock time and date at job start Tue Mar 31 2020 19:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46665 * 2 1 4 4 C 1.50698 * 109.47486 * 240.00127 * 2 1 3 5 5 H 1.08000 * 120.00386 * 239.99961 * 4 2 1 6 6 C 1.37878 * 119.99847 * 59.99541 * 4 2 1 7 7 N 1.31510 * 120.00562 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99990 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47356 * 89.99819 * 8 6 4 10 10 H 1.48502 * 109.47245 * 210.00240 * 8 6 4 11 11 H 1.48502 * 109.47189 * 330.00165 * 8 6 4 12 12 N 1.46502 * 109.47430 * 119.99763 * 2 1 3 13 13 C 1.46500 * 119.99618 * 59.99905 * 12 2 1 14 14 C 1.34774 * 119.99991 * 240.00738 * 12 2 1 15 15 O 1.21274 * 120.00032 * 359.97438 * 14 12 2 16 16 C 1.50702 * 119.99593 * 179.97438 * 14 12 2 17 17 H 1.09000 * 112.84698 * 330.24448 * 16 14 12 18 18 C 1.53781 * 113.61501 * 101.44522 * 16 14 12 19 19 C 1.54051 * 86.98889 * 89.15904 * 18 16 14 20 20 C 1.53777 * 87.07580 * 25.42966 * 19 18 16 21 21 H 1.09003 * 113.61473 * 89.11663 * 20 19 18 22 22 C 1.50700 * 113.61666 * 220.02523 * 20 19 18 23 23 O 1.21283 * 119.99735 * 357.37124 * 22 20 19 24 24 N 1.34771 * 120.00121 * 177.37870 * 22 20 19 25 25 C 1.46500 * 120.00288 * 359.97438 * 24 22 20 26 26 C 1.46508 * 119.99923 * 179.97438 * 24 22 20 27 27 H 1.08997 * 109.46985 * 359.97438 * 26 24 22 28 28 C 1.53001 * 109.46972 * 239.99671 * 26 24 22 29 29 C 1.53000 * 109.47101 * 119.99504 * 26 24 22 30 30 C 1.47203 * 109.47270 * 295.00405 * 29 26 24 31 31 N 2.99277 * 70.14358 * 32.58027 * 2 1 3 32 32 H 1.08994 * 109.47718 * 299.99889 * 1 2 3 33 33 H 1.08999 * 109.47169 * 60.00249 * 1 2 3 34 34 H 1.09006 * 109.46731 * 179.97438 * 1 2 3 35 35 H 0.96998 * 120.00669 * 180.02562 * 7 6 4 36 36 H 1.08991 * 109.47277 * 270.00351 * 13 12 2 37 37 H 1.09003 * 109.47100 * 30.00539 * 13 12 2 38 38 H 1.09000 * 109.46593 * 150.00199 * 13 12 2 39 39 H 1.09004 * 113.61287 * 203.66579 * 18 16 14 40 40 H 1.09005 * 113.61274 * 334.56086 * 18 16 14 41 41 H 1.08996 * 113.60861 * 270.88383 * 19 18 16 42 42 H 1.08994 * 113.69448 * 139.99133 * 19 18 16 43 43 H 1.08996 * 109.47244 * 90.00376 * 25 24 22 44 44 H 1.09001 * 109.46933 * 210.00404 * 25 24 22 45 45 H 1.09000 * 109.47175 * 330.00197 * 25 24 22 46 46 H 1.09002 * 109.46686 * 179.97438 * 28 26 24 47 47 H 1.08997 * 109.47422 * 299.99925 * 28 26 24 48 48 H 1.08998 * 109.47312 * 60.00322 * 28 26 24 49 49 H 1.09005 * 109.46687 * 55.00418 * 29 26 24 50 50 H 1.08997 * 109.47115 * 174.99752 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6035 8 14 2.3214 -1.1202 -4.0079 9 1 1.3429 -2.1617 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6294 -1.7582 -3.7122 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4280 14 6 2.7931 -0.0355 2.0833 15 8 3.0863 1.1255 1.8912 16 6 3.2950 -0.7457 3.3141 17 1 2.6177 -1.5278 3.6572 18 6 4.7597 -1.2021 3.2077 19 6 5.1454 0.1751 3.7802 20 6 3.7526 0.2067 4.4314 21 1 3.7249 -0.2406 5.4250 22 6 3.0922 1.5603 4.3788 23 8 3.6827 2.5048 3.8990 24 7 1.8456 1.7212 4.8650 25 6 1.1322 0.5803 5.4442 26 6 1.2039 3.0373 4.8144 27 1 1.8826 3.7550 4.3536 28 6 0.8659 3.4949 6.2347 29 6 -0.0809 2.9468 3.9884 30 6 0.2552 2.6233 2.5922 31 7 0.5134 2.3719 1.5157 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 0.7088 1.1613 -3.4844 36 1 0.7376 -2.1443 1.9993 37 1 1.5296 -2.5968 0.4708 38 1 2.4629 -2.5817 1.9864 39 1 5.0068 -2.0340 3.8674 40 1 5.0945 -1.3598 2.1825 41 1 5.2882 0.9404 3.0174 42 1 5.9631 0.1369 4.4998 43 1 1.3447 0.5228 6.5117 44 1 0.0602 0.7075 5.2934 45 1 1.4610 -0.3384 4.9583 46 1 0.3888 4.4742 6.1970 47 1 0.1873 2.7773 6.6959 48 1 1.7811 3.5594 6.8231 49 1 -0.7219 2.1661 4.3981 50 1 -0.6039 3.9023 4.0243 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601037363.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:40 Heat of formation + Delta-G solvation = -1.274390 kcal Electronic energy + Delta-G solvation = -32182.328660 eV Core-core repulsion = 28211.652758 eV Total energy + Delta-G solvation = -3970.675901 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.87895 -38.92550 -37.29071 -36.19169 -35.26206 -34.95558 -32.69188 -32.40298 -29.45233 -28.18088 -26.95323 -26.60727 -26.27616 -25.76729 -25.05195 -22.23235 -21.53594 -19.78233 -19.07106 -17.82429 -17.41927 -17.18341 -16.44648 -16.21346 -15.87586 -15.38260 -14.97764 -14.79607 -14.36294 -14.05531 -13.83225 -13.66985 -13.40708 -13.13193 -12.95273 -12.65081 -12.62294 -12.42439 -12.36904 -12.19626 -12.08650 -11.90592 -11.66427 -11.43672 -11.37688 -11.29969 -11.13159 -11.01699 -10.96639 -10.84298 -10.71154 -10.59548 -10.35775 -10.23597 -10.09523 -10.01614 -9.27673 -8.96154 -8.64096 -8.50112 -8.26219 -7.39300 -5.92676 -4.01060 2.96994 3.10099 3.31579 3.38523 3.40884 3.46648 3.50993 3.57179 4.00528 4.42030 4.47986 4.62364 4.68288 4.81284 4.92115 4.95503 5.02114 5.07729 5.16048 5.19411 5.36141 5.37263 5.39576 5.41899 5.49209 5.55552 5.59260 5.66235 5.74404 5.80326 5.90633 5.93184 6.05679 6.06500 6.10006 6.19373 6.42031 6.58928 6.72061 6.96751 7.06668 7.30749 7.57751 7.61036 7.76642 7.91238 8.20901 8.35149 8.44540 8.61030 8.73339 8.99835 9.25115 9.64459 11.11283 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.004691 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.452677 B = 5966.990191 C = 7022.843817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.266 3.734 3 H 0.077 0.923 4 C -0.528 4.528 5 H 0.055 0.945 6 C 0.065 3.935 7 N -0.882 5.882 8 Si 0.893 3.107 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.590 5.590 13 C 0.085 3.915 14 C 0.508 3.492 15 O -0.513 6.513 16 C -0.125 4.125 17 H 0.092 0.908 18 C -0.125 4.125 19 C -0.113 4.113 20 C -0.117 4.117 21 H 0.110 0.890 22 C 0.539 3.461 23 O -0.507 6.507 24 N -0.620 5.620 25 C 0.078 3.922 26 C 0.142 3.858 27 H 0.107 0.893 28 C -0.156 4.156 29 C -0.028 4.028 30 C 0.139 3.861 31 N -0.343 5.343 32 H 0.015 0.985 33 H 0.087 0.913 34 H 0.014 0.986 35 H 0.260 0.740 36 H 0.036 0.964 37 H 0.078 0.922 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.098 0.902 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.920 -2.453 22.145 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.094 0.906 4 C -0.567 4.567 5 H 0.073 0.927 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.721 3.279 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.321 5.321 13 C -0.060 4.060 14 C 0.293 3.707 15 O -0.389 6.389 16 C -0.147 4.147 17 H 0.110 0.890 18 C -0.163 4.163 19 C -0.150 4.150 20 C -0.139 4.139 21 H 0.128 0.872 22 C 0.327 3.673 23 O -0.379 6.379 24 N -0.356 5.356 25 C -0.065 4.065 26 C 0.037 3.963 27 H 0.125 0.875 28 C -0.214 4.214 29 C -0.069 4.069 30 C -0.180 4.180 31 N -0.019 5.019 32 H 0.033 0.967 33 H 0.106 0.894 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.116 0.884 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.143 -1.556 19.962 20.055 hybrid contribution -0.124 -0.894 -0.383 0.980 sum -1.267 -2.450 19.578 19.772 Atomic orbital electron populations 1.22002 0.98543 0.97752 1.00832 1.18902 0.90604 0.94851 0.79000 0.90558 1.21393 1.31687 1.12833 0.90778 0.92706 1.24876 0.95140 0.94976 0.98745 1.69928 1.36337 1.22403 1.23298 0.86587 0.79115 0.79316 0.82875 1.20774 1.21193 1.20052 1.48196 1.48969 1.11138 1.23835 1.21554 0.98235 0.84086 1.02106 1.19734 0.79921 0.87224 0.83844 1.90807 1.56682 1.15861 1.75538 1.22587 0.98731 0.98279 0.95078 0.89012 1.22796 0.93343 0.97618 1.02500 1.22870 0.93909 0.97785 1.00456 1.22626 0.98704 0.93618 0.98924 0.87238 1.20090 0.80752 0.90289 0.76193 1.90662 1.63413 1.41966 1.41901 1.47785 1.15954 1.09318 1.62530 1.21720 0.97702 0.89218 0.97859 1.20926 0.93529 0.86334 0.95464 0.87487 1.22099 1.02184 1.01584 0.95571 1.19500 0.98702 1.03950 0.84717 1.28836 0.96936 0.96980 0.95289 1.81558 1.04079 1.04485 1.11764 0.96660 0.89418 0.96641 0.92974 0.94513 0.90340 0.93058 0.89464 0.90473 0.87636 0.91417 0.92815 0.91184 0.91291 0.91186 0.92106 0.91935 0.88408 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 8.34 37.16 0.31 -3.10 16 2 C 0.27 7.11 2.09 -69.08 -0.14 6.97 16 3 H 0.08 2.41 5.92 -51.93 -0.31 2.10 16 4 C -0.53 -15.05 7.99 -34.44 -0.28 -15.33 16 5 H 0.05 1.54 7.33 -52.49 -0.38 1.15 16 6 C 0.06 1.87 5.30 -17.82 -0.09 1.78 16 7 N -0.88 -26.53 11.32 55.43 0.63 -25.91 16 8 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 N -0.59 -12.93 2.75 -175.27 -0.48 -13.41 16 13 C 0.08 1.47 8.92 59.85 0.53 2.01 16 14 C 0.51 10.51 6.63 -10.99 -0.07 10.44 16 15 O -0.51 -12.69 11.09 -16.25 -0.18 -12.87 16 16 C -0.12 -1.83 2.27 -90.96 -0.21 -2.04 16 17 H 0.09 1.11 6.27 -51.93 -0.33 0.78 16 18 C -0.12 -1.64 7.68 -25.78 -0.20 -1.84 16 19 C -0.11 -1.63 7.01 -25.78 -0.18 -1.81 16 20 C -0.12 -1.58 2.76 -90.96 -0.25 -1.83 16 21 H 0.11 1.07 7.96 -51.93 -0.41 0.65 16 22 C 0.54 8.70 5.19 -10.99 -0.06 8.65 16 23 O -0.51 -10.52 13.90 -16.26 -0.23 -10.74 16 24 N -0.62 -7.77 2.46 -173.93 -0.43 -8.20 16 25 C 0.08 0.68 9.21 59.85 0.55 1.23 16 26 C 0.14 1.61 2.62 -67.93 -0.18 1.43 16 27 H 0.11 1.56 6.90 -51.93 -0.36 1.20 16 28 C -0.16 -1.12 9.19 37.16 0.34 -0.78 16 29 C -0.03 -0.30 5.14 -29.52 -0.15 -0.45 16 30 C 0.14 2.46 15.14 -20.78 -0.31 2.14 16 31 N -0.34 -7.86 13.17 42.12 0.55 -7.31 16 32 H 0.01 0.36 5.98 -51.93 -0.31 0.05 16 33 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 34 H 0.01 0.36 7.67 -51.93 -0.40 -0.04 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 1.48 7.02 -51.93 -0.36 1.12 16 38 H 0.05 0.73 6.54 -51.93 -0.34 0.39 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 41 H 0.11 1.99 6.76 -51.93 -0.35 1.64 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.51 6.34 -51.93 -0.33 0.18 16 45 H 0.07 0.64 5.58 -51.93 -0.29 0.35 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.10 0.80 6.48 -51.93 -0.34 0.47 16 50 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 384.90 15.07 5.80 5.80 Total: -1.00 -38.65 384.90 -7.48 -46.13 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.74 Total: 1.95 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -0.39 Total: 7.47 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.27 Total: -54.82 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.41 Total: -23.61 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.65 -7.48 -46.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601037363.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.853 kcal (2) G-P(sol) polarization free energy of solvation -38.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds