Wall clock time and date at job start Tue Mar 31 2020 19:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.46832 * 2 1 4 4 C 1.53005 * 109.47494 * 240.00323 * 2 1 3 5 5 C 1.47195 * 109.47322 * 174.99538 * 4 2 1 6 6 N 3.43554 * 154.82628 * 248.44090 * 2 1 3 7 7 N 1.46493 * 109.47413 * 119.99935 * 2 1 3 8 8 C 1.46504 * 120.00065 * 60.00215 * 7 2 1 9 9 C 1.34782 * 120.00207 * 240.00166 * 7 2 1 10 10 O 1.21277 * 119.99563 * 0.02562 * 9 7 2 11 11 C 1.50697 * 120.00010 * 179.97438 * 9 7 2 12 12 H 1.09003 * 112.84802 * 48.81186 * 11 9 7 13 13 C 1.53779 * 113.69607 * 277.53807 * 11 9 7 14 14 C 1.53950 * 87.11246 * 220.08143 * 13 11 9 15 15 C 1.53776 * 87.02370 * 25.36137 * 14 13 11 16 16 H 1.08998 * 113.61511 * 89.22893 * 15 14 13 17 17 C 1.50692 * 113.61724 * 220.05070 * 15 14 13 18 18 O 1.21290 * 120.00125 * 99.13159 * 17 15 14 19 19 N 1.34780 * 120.00207 * 279.13584 * 17 15 14 20 20 C 1.46496 * 119.99684 * 359.97438 * 19 17 15 21 21 C 1.46500 * 120.00398 * 179.97438 * 19 17 15 22 22 H 1.09002 * 109.46927 * 359.97438 * 21 19 17 23 23 C 1.52998 * 109.47246 * 119.99643 * 21 19 17 24 24 C 1.50694 * 109.47230 * 240.00202 * 21 19 17 25 25 H 1.08005 * 120.00262 * 354.36392 * 24 21 19 26 26 C 1.37878 * 120.00495 * 174.36924 * 24 21 19 27 27 N 1.31506 * 120.00680 * 157.14713 * 26 24 21 28 28 Si 1.86805 * 119.99572 * 337.14957 * 26 24 21 29 29 H 1.48497 * 109.47212 * 179.97438 * 28 26 24 30 30 H 1.48506 * 109.46851 * 299.99803 * 28 26 24 31 31 H 1.48496 * 109.47314 * 59.99567 * 28 26 24 32 32 H 1.09004 * 109.47289 * 59.99974 * 1 2 3 33 33 H 1.09004 * 109.46832 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47311 * 299.99675 * 1 2 3 35 35 H 1.08999 * 109.46644 * 294.99819 * 4 2 1 36 36 H 1.09007 * 109.46625 * 54.99439 * 4 2 1 37 37 H 1.09000 * 109.47251 * 270.00121 * 8 7 2 38 38 H 1.08999 * 109.46595 * 30.00264 * 8 7 2 39 39 H 1.08996 * 109.46886 * 149.99854 * 8 7 2 40 40 H 1.09005 * 113.61170 * 334.55944 * 13 11 9 41 41 H 1.09002 * 113.61753 * 105.37161 * 13 11 9 42 42 H 1.09004 * 113.60985 * 270.83572 * 14 13 11 43 43 H 1.09004 * 113.66721 * 139.89219 * 14 13 11 44 44 H 1.09003 * 109.47479 * 270.00194 * 20 19 17 45 45 H 1.09006 * 109.47359 * 30.00004 * 20 19 17 46 46 H 1.08995 * 109.47111 * 149.99946 * 20 19 17 47 47 H 1.09003 * 109.47120 * 173.28920 * 23 21 19 48 48 H 1.09000 * 109.47429 * 293.29773 * 23 21 19 49 49 H 1.09008 * 109.46649 * 53.29343 * 23 21 19 50 50 H 0.97004 * 120.00028 * 354.92888 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5070 -0.6172 -1.3113 6 7 4.6392 -0.5370 -1.3591 7 7 2.0183 -0.6905 1.1961 8 6 1.6645 -2.0932 1.4280 9 6 2.7932 -0.0355 2.0833 10 8 3.0857 1.1257 1.8916 11 6 3.2951 -0.7458 3.3140 12 1 3.7414 -1.7149 3.0910 13 6 2.2740 -0.7875 4.4631 14 6 3.4530 -0.5216 5.4166 15 6 4.1647 0.1380 4.2238 16 1 3.9565 1.2035 4.1258 17 6 5.6357 -0.1802 4.1472 18 8 6.0307 -1.0453 3.3944 19 7 6.5124 0.4965 4.9154 20 6 6.0354 1.5417 5.8242 21 6 7.9424 0.1868 4.8414 22 1 8.1043 -0.6116 4.1171 23 6 8.7127 1.4349 4.4060 24 6 8.4308 -0.2580 6.1959 25 1 7.7687 -0.2187 7.0483 26 6 9.7228 -0.7149 6.3471 27 7 10.2996 -0.6777 7.5283 28 14 10.6541 -1.3870 4.8738 29 1 12.0131 -1.8095 5.2980 30 1 9.9237 -2.5539 4.3168 31 1 10.7661 -0.3314 3.8354 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.7517 -1.7714 -1.2056 36 1 1.6053 -0.2616 -2.1370 37 1 0.7376 -2.1445 1.9993 38 1 1.5296 -2.5968 0.4707 39 1 2.4630 -2.5818 1.9862 40 1 1.5478 0.0248 4.4316 41 1 1.8104 -1.7645 4.6000 42 1 3.9423 -1.4294 5.7696 43 1 3.2159 0.1733 6.2223 44 1 6.0299 2.5001 5.3050 45 1 5.0248 1.3021 6.1551 46 1 6.6964 1.6007 6.6889 47 1 9.7836 1.2402 4.4656 48 1 8.4458 1.6871 3.3797 49 1 8.4576 2.2668 5.0626 50 1 9.8445 -0.2619 8.2774 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601037364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:43 Heat of formation + Delta-G solvation = -20.051033 kcal Electronic energy + Delta-G solvation = -30321.695543 eV Core-core repulsion = 26350.205425 eV Total energy + Delta-G solvation = -3971.490118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.97588 -39.40492 -37.70382 -36.76029 -35.94644 -35.30497 -32.92519 -32.69292 -30.24805 -28.67390 -27.26943 -26.85951 -26.61266 -26.01374 -24.67620 -22.49980 -21.45256 -20.05135 -19.01648 -18.48841 -18.04366 -17.54787 -17.38107 -16.77616 -16.15192 -15.81025 -15.47827 -14.85317 -14.62469 -14.28163 -13.96097 -13.93865 -13.57709 -13.47831 -13.25406 -12.97507 -12.83936 -12.78564 -12.68269 -12.58713 -12.44296 -12.28477 -12.06493 -12.00022 -11.84123 -11.76811 -11.62864 -11.49344 -11.32717 -11.24285 -11.18478 -10.88157 -10.55968 -10.43081 -10.02068 -9.73235 -9.69338 -9.10683 -8.98915 -8.90816 -8.26035 -7.68748 -6.47010 -4.09234 2.48179 2.62899 2.68225 2.76099 3.30943 3.45498 3.52703 3.67341 3.73629 3.89480 4.27294 4.39389 4.47787 4.51454 4.54719 4.65909 4.71421 4.75987 4.77196 4.94781 4.99502 5.12251 5.16469 5.19508 5.22761 5.33607 5.41507 5.51659 5.58527 5.63908 5.71137 5.71825 5.74240 5.86549 5.95273 6.04146 6.22600 6.34220 6.35497 6.43823 6.53515 6.68869 7.03158 7.10214 7.24064 7.49090 7.53461 7.92310 8.05382 8.33976 8.42859 8.81813 9.02754 9.55438 10.87779 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015848 B = 0.003240 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.332017 B = 8640.580542 C = 9503.430732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.137 3.863 3 H 0.109 0.891 4 C -0.036 4.036 5 C 0.191 3.809 6 N -0.414 5.414 7 N -0.617 5.617 8 C 0.074 3.926 9 C 0.533 3.467 10 O -0.533 6.533 11 C -0.116 4.116 12 H 0.126 0.874 13 C -0.118 4.118 14 C -0.122 4.122 15 C -0.112 4.112 16 H 0.119 0.881 17 C 0.515 3.485 18 O -0.556 6.556 19 N -0.584 5.584 20 C 0.084 3.916 21 C 0.235 3.765 22 H 0.053 0.947 23 C -0.155 4.155 24 C -0.615 4.615 25 H 0.062 0.938 26 C 0.044 3.956 27 N -0.895 5.895 28 Si 1.030 2.970 29 H -0.284 1.284 30 H -0.279 1.279 31 H -0.276 1.276 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.042 0.958 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.061 0.939 48 H 0.025 0.975 49 H 0.046 0.954 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.611 -0.316 -12.082 29.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.032 3.968 3 H 0.127 0.873 4 C -0.077 4.077 5 C -0.128 4.128 6 N -0.090 5.090 7 N -0.351 5.351 8 C -0.069 4.069 9 C 0.322 3.678 10 O -0.409 6.409 11 C -0.137 4.137 12 H 0.144 0.856 13 C -0.156 4.156 14 C -0.160 4.160 15 C -0.133 4.133 16 H 0.137 0.863 17 C 0.302 3.698 18 O -0.436 6.436 19 N -0.314 5.314 20 C -0.059 4.059 21 C 0.133 3.867 22 H 0.070 0.930 23 C -0.214 4.214 24 C -0.653 4.653 25 H 0.080 0.920 26 C -0.163 4.163 27 N -0.528 5.528 28 Si 0.857 3.143 29 H -0.209 1.209 30 H -0.206 1.206 31 H -0.202 1.202 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.080 0.920 48 H 0.044 0.956 49 H 0.065 0.935 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.065 -0.724 -13.070 26.520 hybrid contribution -1.834 0.694 0.528 2.031 sum -24.899 -0.030 -12.542 27.879 Atomic orbital electron populations 1.22096 0.93298 1.02902 1.03221 1.21026 0.94715 0.98451 0.82630 0.87291 1.19729 0.82773 1.04449 1.00736 1.28971 0.95189 0.94390 0.94233 1.81325 1.12830 1.07426 1.07452 1.47908 1.51829 1.12761 1.22645 1.21845 1.01494 0.81240 1.02323 1.20586 0.76680 0.86716 0.83839 1.90678 1.56835 1.17179 1.76161 1.22697 0.98073 1.01443 0.91493 0.85590 1.22821 0.96062 1.02725 0.93994 1.22844 0.95696 1.01613 0.95840 1.22640 0.92442 1.01562 0.96705 0.86292 1.20172 0.87436 0.81824 0.80342 1.90622 1.79794 1.33167 1.39982 1.47885 1.08681 1.35734 1.39088 1.21629 0.99453 0.90138 0.94714 1.19150 0.75242 0.93609 0.98662 0.92957 1.22418 1.01157 0.99854 0.97938 1.22106 0.99705 1.49733 0.93712 0.91962 1.25591 0.94752 0.94263 1.01686 1.70868 1.38387 1.41446 1.02108 0.84240 0.76478 0.77862 0.75685 1.20924 1.20552 1.20195 0.90899 0.91729 0.91529 0.87204 0.86238 0.92077 0.90953 0.90436 0.89623 0.90185 0.89024 0.90116 0.93896 0.92424 0.90095 0.92037 0.95606 0.93515 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.59 9.19 37.15 0.34 -0.25 16 2 C 0.14 0.97 2.62 -67.93 -0.18 0.79 16 3 H 0.11 1.06 6.90 -51.93 -0.36 0.71 16 4 C -0.04 -0.20 5.14 -29.52 -0.15 -0.35 16 5 C 0.19 2.25 15.14 -20.76 -0.31 1.93 16 6 N -0.41 -6.87 18.54 42.15 0.78 -6.09 16 7 N -0.62 -5.72 2.46 -173.94 -0.43 -6.15 16 8 C 0.07 0.44 9.30 59.85 0.56 1.00 16 9 C 0.53 7.29 7.21 -10.98 -0.08 7.21 16 10 O -0.53 -9.28 15.23 5.56 0.08 -9.20 16 11 C -0.12 -1.56 2.27 -90.96 -0.21 -1.76 16 12 H 0.13 1.83 6.25 -51.93 -0.32 1.50 16 13 C -0.12 -1.14 7.61 -25.83 -0.20 -1.34 16 14 C -0.12 -1.50 6.85 -25.83 -0.18 -1.68 16 15 C -0.11 -1.78 2.12 -90.96 -0.19 -1.97 16 16 H 0.12 1.89 7.20 -51.93 -0.37 1.52 16 17 C 0.52 11.15 7.20 -10.99 -0.08 11.07 16 18 O -0.56 -14.07 15.24 5.55 0.08 -13.99 16 19 N -0.58 -13.05 2.75 -175.27 -0.48 -13.53 16 20 C 0.08 1.52 8.99 59.84 0.54 2.06 16 21 C 0.24 6.07 2.23 -69.09 -0.15 5.92 16 22 H 0.05 1.49 5.48 -51.93 -0.28 1.20 16 23 C -0.16 -3.69 9.02 37.16 0.34 -3.35 16 24 C -0.61 -17.41 8.30 -34.44 -0.29 -17.69 16 25 H 0.06 1.85 7.38 -52.48 -0.39 1.46 16 26 C 0.04 1.28 5.20 -17.82 -0.09 1.19 16 27 N -0.90 -27.31 13.69 55.43 0.76 -26.55 16 28 Si 1.03 26.43 26.43 -169.99 -4.49 21.94 16 29 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 30 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 31 H -0.28 -6.70 6.12 56.52 0.35 -6.35 16 32 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.06 0.15 7.67 -51.93 -0.40 -0.25 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.11 0.32 6.47 -51.93 -0.34 -0.01 16 36 H 0.12 0.26 8.14 -51.92 -0.42 -0.16 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.26 6.34 -51.93 -0.33 -0.07 16 39 H 0.08 0.56 6.21 -51.93 -0.32 0.23 16 40 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 1.24 8.09 -51.93 -0.42 0.82 16 43 H 0.08 0.86 7.61 -51.93 -0.39 0.46 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.85 5.66 -51.93 -0.29 0.56 16 46 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 47 H 0.06 1.49 5.44 -51.93 -0.28 1.21 16 48 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.05 1.03 7.46 -51.92 -0.39 0.64 16 50 H 0.27 8.08 8.73 -40.82 -0.36 7.72 16 LS Contribution 397.99 15.07 6.00 6.00 Total: -1.00 -39.62 397.99 -5.87 -45.49 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.84 Total: -0.70 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -0.34 Total: 2.77 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.63 Total: -52.32 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.17 Total: -23.19 kcal Atomic # 14 Polarization: 26.43 SS G_CDS: -4.49 Total: 21.94 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -39.62 -5.87 -45.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601037364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.443 kcal (2) G-P(sol) polarization free energy of solvation -39.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds