Wall clock time and date at job start Tue Mar 31 2020 19:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.46832 * 2 1 4 4 C 1.53005 * 109.47494 * 240.00323 * 2 1 3 5 5 C 1.47195 * 109.47322 * 174.99538 * 4 2 1 6 6 N 3.43554 * 154.82628 * 248.44090 * 2 1 3 7 7 N 1.46493 * 109.47413 * 119.99935 * 2 1 3 8 8 C 1.46504 * 120.00065 * 60.00215 * 7 2 1 9 9 C 1.34782 * 120.00207 * 240.00166 * 7 2 1 10 10 O 1.21277 * 119.99563 * 0.02562 * 9 7 2 11 11 C 1.50697 * 120.00010 * 179.97438 * 9 7 2 12 12 H 1.09003 * 112.84802 * 48.81186 * 11 9 7 13 13 C 1.53779 * 113.69607 * 277.53807 * 11 9 7 14 14 C 1.53950 * 87.11246 * 220.08143 * 13 11 9 15 15 C 1.53776 * 87.02370 * 25.36137 * 14 13 11 16 16 H 1.08998 * 113.61511 * 89.22893 * 15 14 13 17 17 C 1.50692 * 113.61724 * 220.05070 * 15 14 13 18 18 O 1.21290 * 120.00125 * 99.13159 * 17 15 14 19 19 N 1.34780 * 120.00207 * 279.13584 * 17 15 14 20 20 C 1.46496 * 119.99684 * 359.97438 * 19 17 15 21 21 C 1.46500 * 120.00398 * 179.97438 * 19 17 15 22 22 H 1.09002 * 109.46927 * 359.97438 * 21 19 17 23 23 C 1.52998 * 109.47246 * 119.99643 * 21 19 17 24 24 C 1.50694 * 109.47230 * 240.00202 * 21 19 17 25 25 H 1.08005 * 120.00262 * 354.36392 * 24 21 19 26 26 C 1.37878 * 120.00495 * 174.36924 * 24 21 19 27 27 N 1.31506 * 120.00680 * 157.14713 * 26 24 21 28 28 Si 1.86805 * 119.99572 * 337.14957 * 26 24 21 29 29 H 1.48497 * 109.47212 * 179.97438 * 28 26 24 30 30 H 1.48506 * 109.46851 * 299.99803 * 28 26 24 31 31 H 1.48496 * 109.47314 * 59.99567 * 28 26 24 32 32 H 1.09004 * 109.47289 * 59.99974 * 1 2 3 33 33 H 1.09004 * 109.46832 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47311 * 299.99675 * 1 2 3 35 35 H 1.08999 * 109.46644 * 294.99819 * 4 2 1 36 36 H 1.09007 * 109.46625 * 54.99439 * 4 2 1 37 37 H 1.09000 * 109.47251 * 270.00121 * 8 7 2 38 38 H 1.08999 * 109.46595 * 30.00264 * 8 7 2 39 39 H 1.08996 * 109.46886 * 149.99854 * 8 7 2 40 40 H 1.09005 * 113.61170 * 334.55944 * 13 11 9 41 41 H 1.09002 * 113.61753 * 105.37161 * 13 11 9 42 42 H 1.09004 * 113.60985 * 270.83572 * 14 13 11 43 43 H 1.09004 * 113.66721 * 139.89219 * 14 13 11 44 44 H 1.09003 * 109.47479 * 270.00194 * 20 19 17 45 45 H 1.09006 * 109.47359 * 30.00004 * 20 19 17 46 46 H 1.08995 * 109.47111 * 149.99946 * 20 19 17 47 47 H 1.09003 * 109.47120 * 173.28920 * 23 21 19 48 48 H 1.09000 * 109.47429 * 293.29773 * 23 21 19 49 49 H 1.09008 * 109.46649 * 53.29343 * 23 21 19 50 50 H 0.97004 * 120.00028 * 354.92888 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5070 -0.6172 -1.3113 6 7 4.6392 -0.5370 -1.3591 7 7 2.0183 -0.6905 1.1961 8 6 1.6645 -2.0932 1.4280 9 6 2.7932 -0.0355 2.0833 10 8 3.0857 1.1257 1.8916 11 6 3.2951 -0.7458 3.3140 12 1 3.7414 -1.7149 3.0910 13 6 2.2740 -0.7875 4.4631 14 6 3.4530 -0.5216 5.4166 15 6 4.1647 0.1380 4.2238 16 1 3.9565 1.2035 4.1258 17 6 5.6357 -0.1802 4.1472 18 8 6.0307 -1.0453 3.3944 19 7 6.5124 0.4965 4.9154 20 6 6.0354 1.5417 5.8242 21 6 7.9424 0.1868 4.8414 22 1 8.1043 -0.6116 4.1171 23 6 8.7127 1.4349 4.4060 24 6 8.4308 -0.2580 6.1959 25 1 7.7687 -0.2187 7.0483 26 6 9.7228 -0.7149 6.3471 27 7 10.2996 -0.6777 7.5283 28 14 10.6541 -1.3870 4.8738 29 1 12.0131 -1.8095 5.2980 30 1 9.9237 -2.5539 4.3168 31 1 10.7661 -0.3314 3.8354 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.7517 -1.7714 -1.2056 36 1 1.6053 -0.2616 -2.1370 37 1 0.7376 -2.1445 1.9993 38 1 1.5296 -2.5968 0.4707 39 1 2.4630 -2.5818 1.9862 40 1 1.5478 0.0248 4.4316 41 1 1.8104 -1.7645 4.6000 42 1 3.9423 -1.4294 5.7696 43 1 3.2159 0.1733 6.2223 44 1 6.0299 2.5001 5.3050 45 1 5.0248 1.3021 6.1551 46 1 6.6964 1.6007 6.6889 47 1 9.7836 1.2402 4.4656 48 1 8.4458 1.6871 3.3797 49 1 8.4576 2.2668 5.0626 50 1 9.8445 -0.2619 8.2774 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601037364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:42 Heat of formation + Delta-G solvation = -48.214956 kcal Electronic energy + Delta-G solvation = -30322.916822 eV Core-core repulsion = 26350.205425 eV Total energy + Delta-G solvation = -3972.711397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.07324 -40.68345 -38.81818 -37.87944 -37.16108 -36.89281 -34.89665 -33.50422 -32.21289 -29.13272 -28.03715 -27.95907 -27.64651 -27.50798 -26.80568 -23.24356 -23.08172 -21.10802 -20.23880 -19.86351 -19.58792 -18.88133 -18.49685 -17.93988 -17.25171 -17.24091 -16.55698 -16.24055 -15.79061 -15.62316 -15.30209 -15.08437 -14.73304 -14.64822 -14.29478 -14.27303 -14.09353 -13.94732 -13.90759 -13.69840 -13.49324 -13.41653 -13.32582 -13.22878 -13.03055 -12.90073 -12.85952 -12.56221 -12.53505 -12.47678 -12.39980 -12.07020 -12.01344 -11.77653 -11.76656 -11.50660 -11.29721 -10.70413 -10.60266 -10.51900 -9.68508 -9.56946 -8.77231 -6.42292 1.36746 1.41755 1.51936 1.62839 1.66230 1.78781 1.81864 1.96530 2.28649 2.35779 2.91028 3.07485 3.25690 3.49441 3.55251 3.67642 3.74284 3.92610 4.10599 4.22257 4.28342 4.31155 4.34416 4.42016 4.53494 4.57261 4.59553 4.62260 4.69002 4.70379 4.74582 4.79986 4.83186 4.87856 4.95638 4.96781 4.97645 5.03119 5.06083 5.18901 5.25716 5.34463 5.46523 5.64758 5.65140 5.76522 6.00127 6.30207 6.52075 6.63401 6.66475 7.13449 7.20286 7.33433 8.54179 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015848 B = 0.003240 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.332017 B = 8640.580542 C = 9503.430732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.131 3.869 3 H 0.075 0.925 4 C -0.034 4.034 5 C 0.221 3.779 6 N -0.514 5.514 7 N -0.609 5.609 8 C 0.062 3.938 9 C 0.523 3.477 10 O -0.584 6.584 11 C -0.120 4.120 12 H 0.110 0.890 13 C -0.088 4.088 14 C -0.118 4.118 15 C -0.118 4.118 16 H 0.121 0.879 17 C 0.504 3.496 18 O -0.604 6.604 19 N -0.596 5.596 20 C 0.084 3.916 21 C 0.235 3.765 22 H 0.023 0.977 23 C -0.147 4.147 24 C -0.610 4.610 25 H 0.041 0.959 26 C 0.005 3.995 27 N -0.920 5.920 28 Si 1.061 2.939 29 H -0.274 1.274 30 H -0.284 1.284 31 H -0.256 1.256 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.149 0.851 36 H 0.165 0.835 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.075 0.925 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.063 0.937 47 H 0.054 0.946 48 H 0.034 0.966 49 H 0.060 0.940 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.914 -0.798 -13.290 33.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.027 3.973 3 H 0.093 0.907 4 C -0.074 4.074 5 C -0.095 4.095 6 N -0.192 5.192 7 N -0.342 5.342 8 C -0.079 4.079 9 C 0.313 3.687 10 O -0.464 6.464 11 C -0.142 4.142 12 H 0.128 0.872 13 C -0.125 4.125 14 C -0.155 4.155 15 C -0.139 4.139 16 H 0.139 0.861 17 C 0.294 3.706 18 O -0.486 6.486 19 N -0.325 5.325 20 C -0.058 4.058 21 C 0.131 3.869 22 H 0.041 0.959 23 C -0.206 4.206 24 C -0.648 4.648 25 H 0.059 0.941 26 C -0.198 4.198 27 N -0.554 5.554 28 Si 0.884 3.116 29 H -0.199 1.199 30 H -0.210 1.210 31 H -0.181 1.181 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.167 0.833 36 H 0.182 0.818 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.079 0.921 40 H 0.122 0.878 41 H 0.131 0.869 42 H 0.094 0.906 43 H 0.122 0.878 44 H 0.079 0.921 45 H 0.110 0.890 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.053 0.947 49 H 0.079 0.921 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -27.427 -1.213 -14.280 30.946 hybrid contribution -0.614 0.819 0.895 1.360 sum -28.041 -0.395 -13.384 31.074 Atomic orbital electron populations 1.22038 0.89735 1.04756 1.03763 1.21236 0.97195 0.96714 0.82152 0.90695 1.20290 0.78375 1.07102 1.01662 1.30253 0.96455 0.91464 0.91350 1.81346 1.16186 1.10888 1.10789 1.48040 1.50084 1.13912 1.22146 1.22177 1.02153 0.79110 1.04465 1.20661 0.77198 0.86260 0.84625 1.90650 1.59162 1.19267 1.77367 1.22718 0.98861 0.99814 0.92763 0.87196 1.22768 0.94691 1.05203 0.89863 1.22874 0.96002 1.00981 0.95682 1.22767 0.88382 1.02391 1.00402 0.86109 1.21264 0.89704 0.80652 0.79027 1.90581 1.81056 1.35218 1.41787 1.47998 1.07548 1.36797 1.40190 1.21801 1.00725 0.89837 0.93475 1.18882 0.78043 0.93733 0.96230 0.95913 1.22276 1.00323 0.99226 0.98739 1.22196 0.99274 1.49082 0.94202 0.94105 1.26570 0.95976 0.94296 1.02911 1.70947 1.38884 1.43019 1.02539 0.83804 0.75927 0.77857 0.73962 1.19911 1.21010 1.18107 0.88695 0.89114 0.92749 0.83322 0.81788 0.89025 0.87919 0.92076 0.87776 0.86941 0.90589 0.87822 0.92077 0.89003 0.91801 0.92735 0.94705 0.92104 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 9.19 71.98 0.66 0.25 16 2 C 0.13 1.50 2.62 44.99 0.12 1.61 16 3 H 0.07 1.42 6.90 -2.39 -0.02 1.40 16 4 C -0.03 -0.25 5.14 28.79 0.15 -0.10 16 5 C 0.22 5.09 15.14 89.44 1.35 6.45 16 6 N -0.51 -17.86 18.54 20.00 0.37 -17.49 16 7 N -0.61 -9.97 2.46 -822.60 -2.02 -11.99 16 8 C 0.06 0.51 9.30 127.77 1.19 1.70 16 9 C 0.52 14.08 7.21 87.66 0.63 14.71 16 10 O -0.58 -20.84 15.23 -3.02 -0.05 -20.89 16 11 C -0.12 -3.15 2.27 -11.01 -0.03 -3.18 16 12 H 0.11 3.25 6.25 -2.39 -0.01 3.24 16 13 C -0.09 -1.42 7.61 31.18 0.24 -1.18 16 14 C -0.12 -2.67 6.85 31.18 0.21 -2.46 16 15 C -0.12 -3.73 2.12 -11.02 -0.02 -3.75 16 16 H 0.12 3.80 7.20 -2.39 -0.02 3.78 16 17 C 0.50 22.47 7.20 87.65 0.63 23.10 16 18 O -0.60 -32.11 15.24 -3.06 -0.05 -32.16 16 19 N -0.60 -27.21 2.75 -826.81 -2.28 -29.48 16 20 C 0.08 3.00 8.99 127.77 1.15 4.15 16 21 C 0.23 12.43 2.23 44.24 0.10 12.53 16 22 H 0.02 1.35 5.48 -2.39 -0.01 1.34 16 23 C -0.15 -7.05 9.02 71.98 0.65 -6.40 16 24 C -0.61 -35.52 8.30 25.60 0.21 -35.30 16 25 H 0.04 2.51 7.38 -2.91 -0.02 2.49 16 26 C 0.00 0.27 5.20 84.66 0.44 0.71 16 27 N -0.92 -57.26 13.69 21.45 0.29 -56.96 16 28 Si 1.06 54.39 26.43 68.60 1.81 56.21 16 29 H -0.27 -13.54 7.11 99.48 0.71 -12.83 16 30 H -0.28 -14.65 7.11 99.48 0.71 -13.94 16 31 H -0.26 -12.23 6.12 99.48 0.61 -11.62 16 32 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.09 -0.17 7.67 -2.39 -0.02 -0.18 16 34 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.15 0.02 6.47 -2.39 -0.02 0.01 16 36 H 0.16 -0.14 8.14 -2.38 -0.02 -0.16 16 37 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.10 0.22 6.34 -2.39 -0.02 0.21 16 39 H 0.06 0.75 6.21 -2.39 -0.01 0.74 16 40 H 0.10 1.39 8.10 -2.38 -0.02 1.37 16 41 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.99 8.09 -2.38 -0.02 1.98 16 43 H 0.10 1.88 7.61 -2.38 -0.02 1.86 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.09 2.60 5.66 -2.38 -0.01 2.59 16 46 H 0.06 2.50 6.92 -2.39 -0.02 2.48 16 47 H 0.05 2.65 5.44 -2.39 -0.01 2.64 16 48 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.06 2.68 7.46 -2.38 -0.02 2.67 16 50 H 0.26 16.16 8.73 -92.71 -0.81 15.35 16 Total: -1.00 -96.06 397.99 6.58 -89.48 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.81 Total: 10.45 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 7.69 Total: 12.84 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -3.64 Total: -115.92 kcal Atomic # 8 Polarization: -52.95 SS G_CDS: -0.09 Total: -53.05 kcal Atomic # 14 Polarization: 54.39 SS G_CDS: 1.81 Total: 56.21 kcal Total: -96.06 6.58 -89.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601037364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.262 kcal (2) G-P(sol) polarization free energy of solvation -96.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds