Wall clock time and date at job start Tue Mar 31 2020 18:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46965 * 2 1 4 4 C 1.53004 * 109.46816 * 119.99482 * 2 1 3 5 5 C 1.52998 * 109.46871 * 185.00108 * 4 2 1 6 6 C 1.50699 * 109.46989 * 179.97438 * 5 4 2 7 7 C 1.34514 * 125.79043 * 90.00015 * 6 5 4 8 8 C 1.41381 * 106.84628 * 180.02562 * 7 6 5 9 9 C 1.34516 * 106.83823 * 359.97438 * 8 7 6 10 10 O 1.34303 * 125.79333 * 269.69526 * 6 5 4 11 11 N 1.46496 * 109.47629 * 239.99334 * 2 1 3 12 12 C 1.34783 * 119.99968 * 85.00093 * 11 2 1 13 13 O 1.21582 * 119.99862 * 0.02562 * 12 11 2 14 14 N 1.34773 * 119.99992 * 180.27764 * 12 11 2 15 15 C 1.46501 * 119.99741 * 179.72300 * 14 12 11 16 16 C 1.53045 * 109.46130 * 275.02821 * 15 14 12 17 17 C 1.53192 * 109.30959 * 178.60622 * 16 15 14 18 18 N 1.46920 * 108.76934 * 54.65030 * 17 16 15 19 19 C 1.36948 * 120.62638 * 126.35968 * 18 17 16 20 20 H 1.07999 * 120.00179 * 331.86484 * 19 18 17 21 21 C 1.38818 * 119.99536 * 151.86035 * 19 18 17 22 22 N 1.31618 * 119.99918 * 343.07486 * 21 19 18 23 23 Si 1.86796 * 119.99462 * 163.07275 * 21 19 18 24 24 H 1.48500 * 109.47103 * 60.00469 * 23 21 19 25 25 H 1.48500 * 109.46746 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47572 * 299.99994 * 23 21 19 27 27 C 1.46926 * 118.74412 * 306.38745 * 18 17 16 28 28 C 1.53041 * 109.45757 * 154.97538 * 15 14 12 29 29 H 1.09000 * 109.46965 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47400 * 300.00676 * 1 2 3 31 31 H 1.09004 * 109.46519 * 60.00706 * 1 2 3 32 32 H 1.08998 * 109.47279 * 304.99948 * 4 2 1 33 33 H 1.08995 * 109.47001 * 65.00193 * 4 2 1 34 34 H 1.08998 * 109.47547 * 300.00127 * 5 4 2 35 35 H 1.09002 * 109.47629 * 60.00308 * 5 4 2 36 36 H 1.08001 * 126.58097 * 0.03764 * 7 6 5 37 37 H 1.07993 * 126.58267 * 179.97438 * 8 7 6 38 38 H 1.08001 * 125.79437 * 179.97438 * 9 8 7 39 39 H 0.96993 * 120.00353 * 265.00431 * 11 2 1 40 40 H 0.97002 * 120.00111 * 359.72434 * 14 12 11 41 41 H 1.09001 * 109.46383 * 35.00415 * 15 14 12 42 42 H 1.09003 * 109.49215 * 298.56334 * 16 15 14 43 43 H 1.08999 * 109.49529 * 58.66566 * 16 15 14 44 44 H 1.09005 * 109.59649 * 294.86705 * 17 16 15 45 45 H 1.09001 * 109.70397 * 174.50933 * 17 16 15 46 46 H 0.96999 * 119.99312 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.58089 * 293.81923 * 27 18 17 48 48 H 1.08992 * 109.70332 * 173.46173 * 27 18 17 49 49 H 1.08999 * 109.49927 * 301.33600 * 28 15 14 50 50 H 1.09002 * 109.50131 * 61.40027 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.6132 1.3138 6 6 4.0669 -1.3229 2.5447 7 6 4.4188 -2.6192 2.6168 8 6 4.8262 -2.8598 3.9491 9 6 4.6994 -1.6958 4.6114 10 8 4.2446 -0.7672 3.7544 11 7 2.0184 -0.6907 -1.1960 12 6 2.1472 -0.0184 -2.3571 13 8 1.8585 1.1613 -2.4117 14 7 2.5912 -0.6552 -3.4588 15 6 2.7255 0.0741 -4.7223 16 6 1.3790 0.0859 -5.4497 17 6 1.5145 0.8789 -6.7534 18 7 2.6194 0.3123 -7.5387 19 6 2.4245 -0.0773 -8.8370 20 1 1.4479 -0.4047 -9.1618 21 6 3.4823 -0.0514 -9.7356 22 7 4.5652 0.6429 -9.4573 23 14 3.3686 -1.0021 -11.3395 24 1 2.2144 -0.5036 -12.1297 25 1 4.6193 -0.8120 -12.1172 26 1 3.1816 -2.4460 -11.0470 27 6 3.9372 0.1710 -6.9045 28 6 3.7744 -0.6138 -5.5990 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3632 0.5138 -0.8901 32 1 1.6053 -0.2616 2.1370 33 1 1.7516 -1.7714 1.2058 34 1 3.9994 -1.0727 0.4262 35 1 3.8531 0.4371 1.3575 36 1 4.3949 -3.3384 1.8114 37 1 5.1726 -3.7978 4.3568 38 1 4.9282 -1.5345 5.6545 39 1 2.2491 -1.6318 -1.1524 40 1 2.8220 -1.5964 -3.4151 41 1 3.0374 1.0985 -4.5189 42 1 1.0786 -0.9373 -5.6756 43 1 0.6269 0.5549 -4.8152 44 1 1.7264 1.9236 -6.5255 45 1 0.5880 0.8100 -7.3234 46 1 5.3045 0.6607 -10.0851 47 1 4.3466 1.1580 -6.6890 48 1 4.6107 -0.3661 -7.5722 49 1 4.7275 -0.6429 -5.0709 50 1 3.4515 -1.6305 -5.8230 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609335598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:49 Heat of formation + Delta-G solvation = -8.437803 kcal Electronic energy + Delta-G solvation = -28688.932763 eV Core-core repulsion = 24717.946233 eV Total energy + Delta-G solvation = -3970.986530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.87050 -40.07982 -37.82027 -36.56900 -34.31198 -33.65472 -32.97320 -32.12783 -30.83155 -29.95061 -29.04086 -28.27639 -25.03463 -24.33720 -22.46793 -22.11003 -22.07522 -21.12147 -20.65094 -20.54210 -19.41933 -18.13061 -17.65925 -16.80509 -16.48009 -16.25199 -15.28254 -15.11109 -14.89634 -14.64527 -14.43022 -14.11221 -13.89558 -13.58597 -13.50402 -13.26056 -13.14770 -12.98729 -12.87277 -12.65289 -12.43475 -12.37372 -12.19640 -11.74076 -11.51029 -11.42518 -11.09452 -11.04839 -10.81498 -10.70194 -10.46865 -10.25279 -10.24075 -10.01362 -9.97708 -9.72349 -9.51073 -9.17897 -8.75923 -8.56808 -8.41185 -6.66163 -5.77893 -3.19922 1.40710 2.29499 2.67147 2.82105 3.39242 3.41312 3.44873 3.46016 4.18657 4.36220 4.50899 4.55843 4.61046 4.66650 4.73912 4.89396 5.13676 5.22503 5.29245 5.36212 5.39400 5.43895 5.49676 5.53707 5.55432 5.64338 5.64876 5.66002 5.82358 5.86505 5.93567 6.08127 6.11685 6.18229 6.32388 6.39654 6.51108 6.53703 6.61382 6.64552 6.82087 6.83636 6.94468 7.02369 7.15440 7.34407 7.64135 7.80616 8.19291 8.46530 8.80634 9.22624 9.85939 10.43196 11.31032 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021349 B = 0.001946 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.207665 B =14386.926187 C =15197.132434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.162 3.838 3 H 0.091 0.909 4 C -0.122 4.122 5 C -0.041 4.041 6 C -0.006 4.006 7 C -0.214 4.214 8 C -0.213 4.213 9 C -0.047 4.047 10 O -0.177 6.177 11 N -0.749 5.749 12 C 0.702 3.298 13 O -0.590 6.590 14 N -0.740 5.740 15 C 0.169 3.831 16 C -0.139 4.139 17 C 0.147 3.853 18 N -0.592 5.592 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.903 3.097 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.175 3.825 28 C -0.146 4.146 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.201 0.799 39 H 0.392 0.608 40 H 0.390 0.610 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.020 0.980 45 H 0.055 0.945 46 H 0.254 0.746 47 H 0.021 0.979 48 H 0.091 0.909 49 H 0.053 0.947 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.951 -7.494 27.243 28.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.056 3.944 3 H 0.109 0.891 4 C -0.160 4.160 5 C -0.078 4.078 6 C -0.056 4.056 7 C -0.233 4.233 8 C -0.232 4.232 9 C -0.115 4.115 10 O -0.073 6.073 11 N -0.405 5.405 12 C 0.402 3.598 13 O -0.468 6.468 14 N -0.393 5.393 15 C 0.065 3.935 16 C -0.179 4.179 17 C 0.020 3.980 18 N -0.315 5.315 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.733 3.267 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.211 1.211 27 C 0.048 3.952 28 C -0.186 4.186 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.218 0.782 39 H 0.225 0.775 40 H 0.223 0.777 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.039 0.961 48 H 0.109 0.891 49 H 0.072 0.928 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.126 -6.031 27.114 27.858 hybrid contribution 0.340 -1.782 -0.633 1.921 sum -1.786 -7.812 26.482 27.668 Atomic orbital electron populations 1.22192 0.95318 1.02019 1.02720 1.20752 0.93880 0.97340 0.82412 0.89138 1.21930 0.94044 1.01883 0.98125 1.20185 0.95742 1.01183 0.90729 1.22531 1.03973 0.93124 0.85967 1.21616 1.07273 0.96133 0.98261 1.21849 1.07272 0.99570 0.94533 1.24024 1.03991 0.87488 0.95975 1.84029 1.65490 1.38973 1.18777 1.45285 1.72618 1.13401 1.09214 1.16033 0.78336 0.85220 0.80232 1.90917 1.56844 1.14413 1.84612 1.45561 1.70749 1.13569 1.09446 1.20892 0.96129 0.96145 0.80286 1.22385 0.96357 1.01095 0.98085 1.20878 0.92385 0.94247 0.90445 1.44082 1.05984 1.71583 1.09877 1.19152 0.96599 1.36894 0.85504 0.91721 1.25055 0.97982 0.99059 0.97613 1.70018 1.07145 1.40784 1.36839 0.86363 0.76880 0.80089 0.83389 1.20894 1.21665 1.21089 1.20736 0.88348 0.96618 0.89505 1.22541 0.96602 1.00664 0.98797 0.92646 0.91846 0.91595 0.89917 0.90846 0.88586 0.89728 0.83518 0.83556 0.78232 0.77452 0.77715 0.90110 0.92532 0.92736 0.96182 0.92645 0.93568 0.96105 0.89077 0.92822 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.09 16 2 C 0.16 1.42 2.57 -67.93 -0.17 1.25 16 3 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 4 C -0.12 -0.79 4.74 -26.73 -0.13 -0.92 16 5 C -0.04 -0.30 5.63 -27.88 -0.16 -0.46 16 6 C -0.01 -0.05 6.58 -35.62 -0.23 -0.28 16 7 C -0.21 -1.75 10.81 -39.70 -0.43 -2.18 16 8 C -0.21 -1.60 10.91 -39.70 -0.43 -2.04 16 9 C -0.05 -0.34 12.09 29.42 0.36 0.01 16 10 O -0.18 -1.65 10.65 5.70 0.06 -1.59 16 11 N -0.75 -7.22 4.53 -58.68 -0.27 -7.48 16 12 C 0.70 10.01 8.50 -86.92 -0.74 9.27 16 13 O -0.59 -11.02 15.67 5.29 0.08 -10.93 16 14 N -0.74 -10.17 5.08 -58.63 -0.30 -10.47 16 15 C 0.17 2.95 2.42 -67.89 -0.16 2.79 16 16 C -0.14 -2.57 5.65 -26.61 -0.15 -2.72 16 17 C 0.15 3.21 6.52 -3.71 -0.02 3.18 16 18 N -0.59 -14.84 2.99 -172.32 -0.52 -15.36 16 19 C -0.25 -6.89 9.58 -15.05 -0.14 -7.04 16 20 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 21 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 22 N -0.90 -26.10 11.19 55.49 0.62 -25.47 16 23 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.17 4.10 5.30 -3.71 -0.02 4.08 16 28 C -0.15 -2.66 5.55 -26.61 -0.15 -2.81 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.66 7.75 -51.93 -0.40 0.25 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.20 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.39 2.70 8.62 -40.82 -0.35 2.35 16 40 H 0.39 4.23 8.62 -40.82 -0.35 3.87 16 41 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 46 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 49 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 404.47 15.07 6.10 6.10 Total: -1.00 -33.21 404.47 -10.08 -43.29 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -8.51 Total: 4.37 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -2.32 Total: 1.01 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.46 Total: -58.78 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.14 Total: -12.53 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.21 -10.08 -43.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.854 kcal (2) G-P(sol) polarization free energy of solvation -33.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds